A paradigm for virus-host coevolution: Sequential counter-adaptations between endogenous and exogenous retroviruses

Endogenous retroviruses ( ERVs) are remnants of ancient retroviral infections of the host germline transmitted vertically from generation to generation. It is hypothesized that some ERVs are used by the host as restriction factors to block the infection o

On the comparative efficiency of "V" shaped and rectangular flat otter boards for trawling off Veraval, north west coast of India

V shaped all steel boards, with their inherent stability to tide over obstacles and mud, interchangeability of starboard and portside boards are found to be superior to conventional flat rectangular boards for bottom trawling. These are cheaper in construction, offer less resistance and give longer service. Comparative trials with the two types of boards showed significant difference in tension between the boards but not in catch or horizontal opening.

Vertical distribution of marine wood boring and fouling organisms from the estuarine areas of the south west coast of India

Vertical distribution of marine wood boring and fouling organisms from three different estuarine areas namely, the Ernakulam channel in the Cochin backwaters, Ayiramthengu in the Kayamkulam Lake and Neendakara in the Asthamudi Lake during the post-monsoon, the pre-monsoon and the monsoon periods is presented. The boring organisms noticed during the present study were Martesia striata, Teredo furcifera, Nausitora hedleyi and Sphaeroma terebrans. The dominant fouling organisms were Balanus amphitrite amphitrite, calcareous worms and Modiolus sp. Algae and diatoms were very common on the sub-tidal panels during the monsoon. The incidence of Teredo, Nausitora and calcareous tube worms were significantly high on the bottom panels. Sphaeroma, Balanus and Modiolus occurred in greater numbers on the intertidal panels.

A demersal trawling gear for inshore waters along the west coast

Results of comprehensive efficiency tests of three tested designs of 15m bulged belly, 15.8m six seam and 29.26m longwing type trawls in combination with 114x57cm both rectangular flat and horizontal curved wooden otter boards are reported. Of the possible six combinations, the bulged-belly trawl with flat rectangular otter boards has performed better in landing prawns. Further this study has indicated the selective action of the different designs.

Genotyping of TRIM5 locus in northern pig-tailed macaques (Macaca leonina), a primate species susceptible to Human Immunodeficiency Virus type 1 infection

Background: The pig-tailed macaques are the only Old World monkeys known to be susceptible to human immunodeficiency virus type 1 (HIV-1) infection. We have previously reported that the TRIM5-Cyclophilin A (TRIMCyp) fusion in pig-tailed macaques (Macaca n

Length-weight and tail length-total length relationship in Panulirus homarus Linnaeus on the south-west coast of India

Length-weight relationships of Panulirus homarus caught from the Kanniyakumari coast was found to be W=0.000566 L super(2-50). The relationship between tail length and total length was also investigated and compared with that of Panulirus polyphagus. Same relationship did not hold good for the two sexes as in the case of P. polyphagus. For a given tail length, the head length, the total length and the weight appear to be relatively larger for females of small sizes of P. homarus.

Acute toxicity of metasystox to wedge clam, Donax cuneatus from west coast

96h acute toxicity tests were performed using commercial grade metasystox on the marine wedge clam, Donax cuneatus during summer 1985. The behaviour and mortality rates were recorded periodically. Most of the dams responded in opening the shell valves and extending the siphons quicker in low test concentrations (0.004-0.0052 p.p.m) but this was slow and late in high concentrations (0.0056-0.008 p.p.m). Mortality began to occur in 0.008 p.p.m. from 12 h, whereas, in 0.0052 p.p.m. from 60 h onwards. The observed LC sub(0) value was 0.004 p.p.m. and LC sub(50) 0.0064 p.p.m. The regression equation established was Y = 79.0891 + 33.4523 X. The rate of oxygen concentration increased at LC sub(0) and LC sub(50) values compared to control indicating the disturbed physiological adjustment. The results are correlated with physico-chemical parameters of seawater and discussed in the light of pesticide toxicity to the dam.

Secondary structural analysis of the mRNA regions encoding the hemagglutinin cleavage site basic amino acids of the avian influenza virus H5N1 subtype samples

Here we report the codon bias and the mRNA secondary structural features of the hemagglutinin (HA) cleavage site basic amino acid regions of avian influenza virus H5N1 subtypes. We have developed a dynamic extended folding strategy to predict RNA secondar

Performance of 25m large mesh demersal trawl off Veraval, north west coast of India

Performance of a 25m large mesh demersal trawl, with 150mm mesh size in the fore parts of the trawl was evaluated in comparison with one boat high opening trawl of the Bay of Bengal Programme (BOBP) with 360 meshes of 160mm mesh size and 25.6m head rope length. An 8.2% increase in catch was obtained by 25m large mesh demersal trawl. The gear is comparatively cheaper, lighter in construction and offered better horizontal spread with significantly lower towing resistance. Commercial suitability of the gear for efficient harvesting of demersal fish resources of the region is discussed.

Quality of cured fish on the west coast: comparative study with the IS specifications

Moisture and salt content in cured fish products from various centres on the west coast of India are compared. The moisture contents varied in samples from different centres, whereas the salt content remained more or less uniform. The deviations from the Indian standard specification were highly significant in both cases. The high mean moisture values and low salt values with respect to accepted standards are indicative of the improper drying and poor salting.

Impact of plankton structure on primary productivity in two beels of West Bengal, India

Planktonic community in floodplain wetlands embodies the energy transfer through this phase and indicates trophic status of lake. Originally rich bottom coupled with a conducive physicochemical environment encourages fast colonization of the plankton population. Present investigation was carried out in two floodplain wetlands having characteristics of open (Amda beel) and closed (Suguna beel) system. The physicochemical parameters of water and soil of the investigated heels were by and large conducive for planktonic growth. The density of plankton population varied between 1,346 and 2,170 u/l in Suguna bed whereas in Amda beel it ranged from 1,030 to 1,802 u/l. Seasonal fluctuations in water column were conspicuous and mostly dependent on the replenished resources and volume, A mixed and balanced population of diversified fauna constituted the plankton population of the investigated ecosystems. Mostly the diversity was observed to be maximum during winter seasons with coincidence of favorable temperature, dissolved oxygen and other physico-chemical parameters of water besides optimum solar penetration. Richness of planktonic structure in closed system (Suguna) resulted in higher fish production (1,570,05 kg/ha/yr) than that of open system (Amda) (384.4 kg/ha/yr).

Effects of socking [sic] density on ammonia excretion and the growth of Nile tilapia (Oreochromis niloticus L.)

The effects of stocking density (10, 15, 50 & 75 fish in 65L tank) and ammonia excretion on the growth of Nile tilapia, Oreochromis niloticus (12.19 ± 1.21 g) were investigated. Increasing stocking density of Nile tilapia from 15 fish/tank (2.81 g fish/L) to 75 fish/tank (14.07 g fish/L) resulted in associated increase in ammonia level (1.48 ± 0.87 mg/L to 26.44 ± 11.4 mg/L) and significantly lower growth rates. Significantly better feed conversion ratios were found for fish reared at lower (15 fish/tank) stocking densities compared to higher (75 fish/tank) stocking densities. Individual growth rates were significantly better for fish reared at a lower stocking density 15 fish/tank compared to higher stocking density 75 fish/tank and size variation (coefficient of variation in weight) were positively correlated with stocking density. Although water exchange did not have a significant effect on the growth of Nile tilapia for fish stocked at 10 fish/tank (1.88 g fish/L) and 50 fish/tank (9.38 g fish/L), however, the fish in the higher stocking density (9.38 g fish/L) groups and without water exchange, significantly changed the coloration of their bodies (silver to black) which may be due to the lower oxygen levels combined with higher ammonia levels. Ammonia level increased with increasing stocking density and without water exchange. In this study, it may be suggested that when fish reared at higher stocking densities then water exchange must be taken in to consideration so as to help avoid environmental and physiological stress to the fish.

Effect of salinity and food ration level on the growth of Nile tilapia (Oreochromis niloticus L.)

The effect of salinity (0, 10 & 20‰, water temperature 28 ± 1°C) and food ration (3 and 4.5% bw/day) on food consumption and growth of Nile tilapia, Oreochromis niloticus (10.77 ± 0.21g) were investigated. Individual food consumption was measured using X-radiography technique. Salinities (0, 10 & 20‰) did not have significant effect on the growth rate of groups of Nile tilapia fed at different ration levels (3 & 4.5% bw/day). This study showed that the growth of all-male fish was significantly better than all-female fish for all three salinities and two rations. Salinities from 0 to 20‰ had no effect on growth performance of males or female fish. In the present study, it was evident that fish fed at 3% bw/day ration ate all the food offered and fish fed at 4.5% bw/day did not consumed all amounts. Also, growth performance did not significantly differ among fish fed at 3% bw/day ration level and reared at different salinities. Fish reared under higher salinities (20‰) and fed at higher ration (4.5% bw/day) level had skin lesions and injuries on their body. It was assumed that fish fed at higher ration under higher salinities (20‰) and maintained higher osmoregulatory costs together with osmotic stress may have a negative influence on the appetite of fish. Another possibility that may have affected the appetite could be the unionized ammonia levels that were high. The high-unionized ammonia levels combined with the osmotic stress may have been the cause, or have aided, development of skin lesions and injuries on the fish at higher salinities.