Thermal tool for evaluation of essential oils of Eucalyptus spp susceptible and resistant to Glycaspis brimblecombei attack.

Eucalyptus spp genus is economically important to different industry fields. There are pests that damage the development of eucalypts and Glycaspis brimblecombei, a sap-sucking insect, is one of them. Studies about this insect attack to the eucalypts showed preferences. This work aim was to compare the preferences of the insect with thermoanalytical characteristics of different eucalypts (susceptible, less susceptible and resistant to Glycaspis brimblecombei) essential oils. The leaves of six species of Eucalyptus were crushed and the essential oil was extracted using Clevenger apparatus. The Shimadzu DTG-60H was used to analyze the samples. The results showed that the samples from more susceptible eucalypts had total mass loss at about 124ºC to 156ºC, lower than samples from more resistant eucalypts (from 168ºC to 175ºC). Furthermore, the study suggests that the susceptibility or the resistance of eucalypts to the pest may be related to their essential oil composition and concentration of monoterpenes and sesquiterpenes.

Soil carbon and nitrogen in pasture soil reforested with eucalyptus and guachapele.

Apesar de os teores de matéria orgânica serem normalmente baixos em solos arenosos, ela é responsável por quase a totalidade da CTC, armazenamento de água e disponibilidade de nutrientes desses solos. A avaliação de sistemas de exploração florestais alternativos, com vistas em incrementar a acumulação de C e N, devem ser incentivados. Este estudo compara plantios puros e mistos de Eucalyptus grandis e Pseudosamanea guachapele, leguminosa fixadora de N2, em relação os estoques de C e N do solo. Os plantios foram realizados em áreas anteriormente manejadas com Panicum maximum num Planossolo, que, por pelo menos dez anos, não recebeu qualquer fertilizante. Para estimar o C e o N estocado, foram retiradas amostras das camadas de 0-2,5; 2,5-5,0; 5,0-7,5; 7,5-10,0; 10,0-20,0 e 20,0-40,0 cm tanto nos plantios puros e mistos, quanto na área de pasto. A técnica da abundância natural do 13C foi utilizada na estimativa do C originado das árvores nos 10 cm superficiais. Os estoques de C e N, no plantio misto atingiu valores de 23,83 e 1,74 Mg ha-1, respectivamente. Nos puros, de guachapele e eucalipto, e no pasto os estoques de C estimados foram de 14,20; 17,19 e 24,24 Mg ha-1, respectivamente. Para os mesmos tratamentos, os estoques de N foram estimados em 0,83; 0,99 e 1,71 Mg ha-1, respectivamente. Mais de 40 % do C do solo sob o plantio misto foram estimados como sendo derivados das árvores, enquanto nos plantios puros de eucalipto e guachapele, a contribuição do C das árvores ficou em 19 e 27 %, respectivamente. Esses resultados evidenciam que a presença da leguminosa no plantio consorciado aumenta os estoques de C e N do solo.

Biological nitrogen fixation and nutrient release from litter of the guachapele leguminous tree under pure and mixed plantation with eucalyptus.

A Pseudosamanea guachapele (guachapele), leguminosa arbórea fixadora de nitrogênio, é uma alternativa para plantios florestais mistos nos trópicos. Como são escassas as informações sobre a espécie em plantios mistos de eucalipto em condições edafoclimáticas brasileiras, foi conduzido um experimento no qual objetivou-se avaliar a contribuição da fixação biológica de nitrogênio para a guachapele e a velocidade de decomposição e de liberação de nutrientes de folhas senescentes de eucalipto e guachapele (oriundas dos plantios puros e consorciado). A porcentagem de N derivado da atmosfera (% Ndfa) foi estimada comparando-se a abundância natural de 15N ( 15N, ) nos tecidos da guachapele com a observada nos tecidos do Eucalyptus grandis, espécie não fixadora, ambas com sete anos de idade. A constante de decomposição (k) e a meia-vida (t1/2) de serapilheira foram estimadas utilizando-se o modelo exponencial aplicado aos dados oriundos de coletas de litterbags. A estimativa da %Ndfa para guachapele, em condições de plantio puro, variou de 17 a 36%, enquanto que, em condições de plantio consorciado, foi de 35 a 60 %. A concentração de N nas folhas senescentes estava positivamente relacionada com a taxa de decomposição, sendo essa decrescente da guachapele para o eucalipto. A t1/2 dos resíduos diferiu significativamente (p < 0.05), sendo de 148, 185 e 218 dias para as folhas de guachapele, mistura das duas espécies e eucalipto, respectivamente. A liberação dos nutrientes (principalmente N, K e Mg) das folhas seguiu a mesma ordem da t1/2 devido à qualidade inicial das mesmas. Os resultados indicam que a guachapele pode beneficiar o plantio misto pela adição de N e por meio da intensificação da decomposição da serapilheira.

Evaluation of the throughfall and stemflow nutrient contents in mixed and pure plantations of Acacia mangium, Pseudosamenea guachapele and Eucalyptus grandis.

A interceptação da chuva pela copa das florestas tem grande relevância no ciclo biogeoquímico de nutrientes nos solos de baixa fertilidade sob florestas nativas e plantadas. Entretanto, pouco se sabe sobre as modificações na qualidade dessa água e no balanço hidrológico após a interceptação pela copa do eucalipto sob condições de plantios puros e mistos com leguminosas, no Brasil. Amostras de água de chuva (RF), de precipitação interna (TF) e de escoamento pelo tronco (SF), foram coletadas e analisadas quimicamente em plantios puros de mangium (espécie fixadora de nitrogênio atmosférico - EFN), guachapele (EFN) e eucalipto (espécie não fixadora de nitrogênio - ENFN) e consorciados com guachapele e eucalipto, em Seropédica, Rio de Janeiro. Nove coletores de escoamento pelo tronco (colocados em árvores), nove pluviômetros posicionados ao acaso nos plantios e três fora da influência deles foram utilizados no monitoramento durante 5,5 meses. A mangium direcionou 33,4% do total precipitado para o seu tronco. Uma estimativa baseada na correção da média anual precipitada na área (1.213 mm) indicou uma contribuição no aporte de nutrientes (kg ha-1) de 8,42; 0,95; 19,04; 6,74; 4,72; e 8,71 kg ha-1 dos elementos N-NH4+, P, K+, Ca+2, Mg+2 and Na+, respectivamente. A precipitação interna participou com a maior parte da contribuição, em comparação com o escoamento pelo tronco. Os maiores aportes de N-NH4+ (15,03 kg ha-1) e K+ (179,43 kg ha-1) foram observados sob as copas de guachapele em plantio puro. Elevada quantidade de Na+ denota influencia do mar próximo à área experimental. A mangium foi a espécie adaptada à competição por água. Comparativamente ao plantio puro de eucalipto, o plantio misto intensificou a lixiviação de N, Ca e Mg da copa, enquanto o de K e o P aportaram em menores quantidades nesse plantio.

Examining the cause of high inbreeding depression: analysis of whole-genome sequence data in 28 selfed progeny of Eucalyptus grandis.

2016

Prediction of G protein coupled receptors from plant genomes.

2016

De Novo Assembly And Transcriptome Analysis Of The Rubber Tree (hevea Brasiliensis) And Snp Markers Development For Rubber Biosynthesis Pathways.

Hevea brasiliensis (Willd. Ex Adr. Juss.) Muell.-Arg. is the primary source of natural rubber that is native to the Amazon rainforest. The singular properties of natural rubber make it superior to and competitive with synthetic rubber for use in several applications. Here, we performed RNA sequencing (RNA-seq) of H. brasiliensis bark on the Illumina GAIIx platform, which generated 179,326,804 raw reads on the Illumina GAIIx platform. A total of 50,384 contigs that were over 400 bp in size were obtained and subjected to further analyses. A similarity search against the non-redundant (nr) protein database returned 32,018 (63%) positive BLASTx hits. The transcriptome analysis was annotated using the clusters of orthologous groups (COG), gene ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and Pfam databases. A search for putative molecular marker was performed to identify simple sequence repeats (SSRs) and single nucleotide polymorphisms (SNPs). In total, 17,927 SSRs and 404,114 SNPs were detected. Finally, we selected sequences that were identified as belonging to the mevalonate (MVA) and 2-C-methyl-D-erythritol 4-phosphate (MEP) pathways, which are involved in rubber biosynthesis, to validate the SNP markers. A total of 78 SNPs were validated in 36 genotypes of H. brasiliensis. This new dataset represents a powerful information source for rubber tree bark genes and will be an important tool for the development of microsatellites and SNP markers for use in future genetic analyses such as genetic linkage mapping, quantitative trait loci identification, investigations of linkage disequilibrium and marker-assisted selection.

Exploring Iris Colour Prediction And Ancestry Inference In Admixed Populations Of South America.

New DNA-based predictive tests for physical characteristics and inference of ancestry are highly informative tools that are being increasingly used in forensic genetic analysis. Two eye colour prediction models: a Bayesian classifier - Snipper and a multinomial logistic regression (MLR) system for the Irisplex assay, have been described for the analysis of unadmixed European populations. Since multiple SNPs in combination contribute in varying degrees to eye colour predictability in Europeans, it is likely that these predictive tests will perform in different ways amongst admixed populations that have European co-ancestry, compared to unadmixed Europeans. In this study we examined 99 individuals from two admixed South American populations comparing eye colour versus ancestry in order to reveal a direct correlation of light eye colour phenotypes with European co-ancestry in admixed individuals. Additionally, eye colour prediction following six prediction models, using varying numbers of SNPs and based on Snipper and MLR, were applied to the study populations. Furthermore, patterns of eye colour prediction have been inferred for a set of publicly available admixed and globally distributed populations from the HGDP-CEPH panel and 1000 Genomes databases with a special emphasis on admixed American populations similar to those of the study samples.

The mitochondrial genome of the stingless bee Melipona bicolor (Hymenoptera, Apidae, Meliponini): sequence, gene organization and a unique tRNA translocation event conserved across the tribe Meliponini

At present a complete mtDNA sequence has been reported for only two hymenopterans, the Old World honey bee, Apis mellifera and the sawfly Perga condei. Among the bee group, the tribe Meliponini (stingless bees) has some distinction due to its Pantropical distribution, great number of species and large importance as main pollinators in several ecosystems, including the Brazilian rain forest. However few molecular studies have been conducted on this group of bees and few sequence data from mitochondrial genomes have been described. In this project, we PCR amplified and sequenced 78% of the mitochondrial genome of the stingless bee Melipona bicolor (Apidae, Meliponini). The sequenced region contains all of the 13 mitochondrial protein-coding genes, 18 of 22 tRNA genes, and both rRNA genes (one of them was partially sequenced). We also report the genome organization (gene content and order), gene translation, genetic code, and other molecular features, such as base frequencies, codon usage, gene initiation and termination. We compare these characteristics of M. bicolor to those of the mitochondrial genome of A. mellifera and other insects. A highly biased A+T content is a typical characteristic of the A. mellifera mitochondrial genome and it was even more extreme in that of M. bicolor. Length and compositional differences between M. bicolor and A. mellifera genes were detected and the gene order was compared. Eleven tRNA gene translocations were observed between these two species. This latter finding was surprising, considering the taxonomic proximity of these two bee tribes. The tRNA Lys gene translocation was investigated within Meliponini and showed high conservation across the Pantropical range of the tribe.

Non-coding RNAs in schistosomes: an unexplored world

Non-coding RNAs (ncRNAs) were recently given much higher attention due to technical advances in sequencing which expanded the characterization of transcriptomes in different organisms. ncRNAs have different lengths (22 nt to >1, 000 nt) and mechanisms of action that essentially comprise a sophisticated gene expression regulation network. Recent publication of schistosome genomes and transcriptomes has increased the description and characterization of a large number of parasite genes. Here we review the number of predicted genes and the coverage of genomic bases in face of the public ESTs dataset available, including a critical appraisal of the evidence and characterization of ncRNAs in schistosomes. We show expression data for ncRNAs in Schistosoma mansoni. We analyze three different microarray experiment datasets: (1) adult worms' large-scale expression measurements; (2) differentially expressed S. mansoni genes regulated by a human cytokine (TNF-α) in a parasite culture; and (3) a stage-specific expression of ncRNAs. All these data point to ncRNAs involved in different biological processes and physiological responses that suggest functionality of these new players in the parasite's biology. Exploring this world is a challenge for the scientists under a new molecular perspective of host-parasite interactions and parasite development.

Topochemical distribution of lignin and hydroxycinnamic acids in sugar-cane cell walls and its correlation with the enzymatic hydrolysis of polysaccharides

Background: Lignin and hemicelluloses are the major components limiting enzyme infiltration into cell walls. Determination of the topochemical distribution of lignin and aromatics in sugar cane might provide important data on the recalcitrance of specific cells. We used cellular ultraviolet (UV) microspectrophotometry (UMSP) to topochemically detect lignin and hydroxycinnamic acids in individual fiber, vessel and parenchyma cell walls of untreated and chlorite-treated sugar cane. Internodes, presenting typical vascular bundles and sucrose-storing parenchyma cells, were divided into rind and pith fractions. Results: Vascular bundles were more abundant in the rind, whereas parenchyma cells predominated in the pith region. UV measurements of untreated fiber cell walls gave absorbance spectra typical of grass lignin, with a band at 278 nm and a pronounced shoulder at 315 nm, assigned to the presence of hydroxycinnamic acids linked to lignin and/or to arabino-methylglucurono-xylans. The cell walls of vessels had the highest level of lignification, followed by those of fibers and parenchyma. Pith parenchyma cell walls were characterized by very low absorbance values at 278 nm; however, a distinct peak at 315 nm indicated that pith parenchyma cells are not extensively lignified, but contain significant amounts of hydroxycinnamic acids. Cellular UV image profiles scanned with an absorbance intensity maximum of 278 nm identified the pattern of lignin distribution in the individual cell walls, with the highest concentration occurring in the middle lamella and cell corners. Chlorite treatment caused a rapid removal of hydroxycinnamic acids from parenchyma cell walls, whereas the thicker fiber cell walls were delignified only after a long treatment duration (4 hours). Untreated pith samples were promptly hydrolyzed by cellulases, reaching 63% of cellulose conversion after 72 hours of hydrolysis, whereas untreated rind samples achieved only 20% hydrolyzation. Conclusion: The low recalcitrance of pith cells correlated with the low UV-absorbance values seen in parenchyma cells. Chlorite treatment of pith cells did not enhance cellulose conversion. By contrast, application of the same treatment to rind cells led to significant removal of hydroxycinnamic acids and lignin, resulting in marked enhancement of cellulose conversion by cellulases.

Estudo da massa específica básica e da variação dimensional da madeira de três espécies de eucalipto para a indústria moveleira

The utilization of wood from reforested species by the furniture industry is a recent trend. Thus, the present study determined the specific gravity and shrinkage of wood of 18-year-old Eucalyptus grandis, Eucalyptus dunnii and Eucalyptus urophylla, for use as components in solid wood furniture making. The tests to evaluate the specific gravity and shrinkage of wood in the radial and axial variation of the eucalyptus trees were performed according to NBR 7190/96. The results of the analysis of wood from eucalypt species were subjected to the Homogeneity Test, ANOVA, Tukey and Pearson correlation and compared to the performance of sucupira wood (Bowdichia nitida) and cumaru wood (Dipteryx odorata), often used in the furniture industry. The following results were found: Eucalyptus grandis had a lower value of shrinkage, being more suitable for furniture components that require high dimensional stability, as well as parts of larger surface. The wood of this species showed a rate of dimensional variation compatible with the native species used in the furniture industry. The radial variation of the wood was also verified, and a high correlation between specific gravity and shrinkage was found. Longitudinally, the base of the trunk of the eucalyptus trees was shown to be the region of greatest dimensional stability.

NEAR INFRARED SPECTROSCOPY FOR ESTIMATING SUGARCANE BAGASSE CONTENT IN MEDIUM DENSITY FIBERBOARD

Medium density fiberboard (MDF) is an engineered wood product formed by breaking down selected lignin-cellulosic material residuals into fibers, combining it with wax and a resin binder, and then forming panels by applying high temperature and pressure. Because the raw material in the industrial process is ever-changing, the panel industry requires methods for monitoring the composition of their products. The aim of this study was to estimate the ratio of sugarcane (SC) bagasse to Eucalyptus wood in MDF panels using near infrared (NIR) spectroscopy. Principal component analysis (PCA) and partial least square (PLS) regressions were performed. MDF panels having different bagasse contents were easily distinguished from each other by the PCA of their NIR spectra with clearly different patterns of response. The PLS-R models for SC content of these MDF samples presented a strong coefficient of determination (0.96) between the NIR-predicted and Lab-determined values and a low standard error of prediction (similar to 1.5%) in the cross-validations. A key role of resins (adhesives), cellulose, and lignin for such PLS-R calibrations was shown. PLS-DA model correctly classified ninety-four percent of MDF samples by cross-validations and ninety-eight percent of the panels by independent test set. These NIR-based models can be useful to quickly estimate sugarcane bagasse vs. Eucalyptus wood content ratio in unknown MDF samples and to verify the quality of these engineered wood products in an online process.

Produção de óleo essencial e balanço nutricional em Corymbia citriodora adubado com lodo de esgoto em diferentes espaçamentos

The Corymbia citriodora is one of the most cultivated species in Brazil for wood and essential oil production. The oil is obtained by the leaves distillation and the yield is around 2%. For the sustainability of leaves extraction is necessary a good nutritional replacement, because the leaves contain a large quantity of nutrients. The sewage sludge application in Corymbia plantations is a way to apply organic fertilizer and is also a good alternative for the final disposal of this residue. In this context, the objective of this study was to evaluate the sewage sludge use as fertilizer for the essential oil production in two different Spacing. The experiment was constituted by 4 blocks and the treatments were: i) Close spacing (1m x 1m) with sewage sludge + K and B; ii) Close spacing with mineral fertilization: iii) Regular spacing (3m x 1m) with sewage sludge + K and B; and iv) Regular spacing with mineral fertilization. When the C. citriodora plots were 12, 18, 24 and 30 months old, leaves and branches biomass and also essential oil production were quantified. It was observed that the system of close planting totalized a higher biomass, 3.8 times more than the conventional system, providing 3 times more essential oil production (363 l ha(-1) at the close spacing and 116 l ha(-1) at the regular Spacing during 30 months). No difference was found in the leaves or oil production with the use of sewage sludge or mineral fertilizer any of spacing studied The use of sewage sludge as fertilizer for Corymbia citriodora plantations may be an interesting alternative. because it supplies large quantities of nutrients and ensures a positive budget of nutrients in the ecosystem.

Chicken skeletal muscle-associated macroarray for gene discovery

Macro- and microarrays are well-established technologies to determine gene functions through repeated measurements of transcript abundance. We constructed a chicken skeletal muscle-associated array based on a muscle-specific EST database, which was used to generate a tissue expression dataset of similar to 4500 chicken genes across 5 adult tissues (skeletal muscle, heart, liver, brain, and skin). Only a small number of ESTs were sufficiently well characterized by BLAST searches to determine their probable cellular functions. Evidence of a particular tissue-characteristic expression can be considered an indication that the transcript is likely to be functionally significant. The skeletal muscle macroarray platform was first used to search for evidence of tissue-specific expression, focusing on the biological function of genes/transcripts, since gene expression profiles generated across tissues were found to be reliable and consistent. Hierarchical clustering analysis revealed consistent clustering among genes assigned to 'developmental growth', such as the ontology genes and germ layers. Accuracy of the expression data was supported by comparing information from known transcripts and tissue from which the transcript was derived with macroarray data. Hybridization assays resulted in consistent tissue expression profile, which will be useful to dissect tissue-regulatory networks and to predict functions of novel genes identified after extensive sequencing of the genomes of model organisms. Screening our skeletal-muscle platform using 5 chicken adult tissues allowed us identifying 43 'tissue-specific' transcripts, and 112 co-expressed uncharacterized transcripts with 62 putative motifs. This platform also represents an important tool for functional investigation of novel genes; to determine expression pattern according to developmental stages; to evaluate differences in muscular growth potential between chicken lines, and to identify tissue-specific genes.