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The hydrographic conditions prevailing in an estuarine system along the southwest coast of India are described. The nature of destruction of timber in these backwaters has been examined in detail which revealed the existence of 8 species of shipworms, 2 species each of pholads and isopods. The shipworms are represented by Dicyathifer manni, Lyrodus pedicellatus, Teredo furcifera, T. clappi, Nausitora dunlopei, Bankia carinata, B. campanellata; the pholads by Martesia striata and M. (Purticoma) nairi; and the isopods by Sphaeroma terebrans and S. annandalei. The incidence and relative abundance of these pests are discussed in relation to the salinity profile of the estuary.