The temporal sequence of allergic sensitization and onset of infantile eczema

Background: Eczema is commonly associated with sensitization in infants, but the causative role of sensitization in the development of eczema has been questioned.

Objective: To determine if allergic sensitization increases the risk of developing eczema, or alternatively, if eczema increases the risk of developing allergic sensitization.

Methods: We used data from the Melbourne Atopy Cohort Study, a prospective birth cohort of 552 infants with a family history of atopic disease. The main outcomes were risk of developing eczema from 6 months to 7 years of age in asymptomatic infants; and risk of developing sensitization, as measured by skin prick tests to milk, egg white, peanut, house dust mite, rye grass pollen and cat extracts, in previously unsensitized infants.

Results: Sensitization to food extracts at 6 months was associated with an increased risk of developing eczema [hazard ratio (HR) 1.63, 95% confidence interval 1.13–2.35] up to 7 years of age, after excluding infants with eczema in the first 6 months. However, eczema in the first 6 months was also associated with increased risk of new sensitization at both 1 year (HR 2.34, 1.38–3.98) and 2 years (HR 3.47, 1.65–7.32).

Conclusion: In some infants, sensitization precedes and predicts the development of eczema, while in others eczema precedes and predicts the development of sensitization. This indicates that there are multiple pathways to atopic eczema.

Poetry and silence : "a sequence of disappearances"

[No Abstract]

A novel pseudonoise sequence for time-spread echo based audio watermarking

This paper deals with the problem of digital audio watermarking using echo hiding. Compared to many other methods for audio watermarking, echo hiding techniques exhibit advantages in terms of relatively simple encoding and decoding, and robustness against common attacks. The low security issue existing in most echo hiding techniques is overcome in the timespread echo method by using pseudonoise (PN) sequence as a secret key. In this paper, we propose a novel sequence, in conjunction with a new decoding function, to improve the imperceptibility and the robustness of time-spread echo based audio watermarking. Theoretical analysis and simulation examples illustrate the effectiveness of the proposed sequence and decoding function.

Effective pseudonoise sequence and decoding function for imperceptibility and robustness enhancement in time-spread echo-based audio watermarking

This paper proposes an effective pseudonoise (PN) sequence and the corresponding decoding function for time-spread echo-based audio watermarking. Different from the traditional PN sequence used in time-spread echo hiding, the proposed PN sequence has two features. Firstly, the echo kernel resulting from the new PN sequence has frequency characteristics with smaller magnitudes in perceptually significant region. This leads to higher perceptual quality. Secondly, the correlation function of the new PN sequence has three times more large peaks than that of the existing PN sequence. Based on this feature, we propose a new decoding function to improve the robustness of time-spread echo-based audio watermarking. The effectiveness of the proposed PN sequence and decoding function is illustrated by theoretical analysis, simulation examples, and listening test.

Sequence analysis of a salt tolerant metagenomic clone

Metagenome represent an unlimited resource for discovery of novel genes. Here we report, sequence analysis of a salt tolerant metagenomic clone (6B4) from a pond water metagenomic library. Clone 6B4 had an insert of 2254 bp with G+C composition of 64.06%. DNA sequence from 6B4 showed homology to DNA sequences from proteobacteria indicating origin of 6B4 metagenomic insert from a yet uncharacterized proteobacteria. Two encoded proteins from clone 6B4 showed match with ATP-dependent Clp protease adaptor protein (ClpS) and phasin, while two truncated encoded proteins showed match with poly-3-hydroxybutyrate synthase and permease. Clp complex is known to play a role in stress tolerance. Expression of ClpS from metagenomic clone is proposed to be responsible for salt tolerance of the metagenomic clone 6B4.

Analysis of protein sequence and interaction data for candidate disease gene prediction

Linkage analysis is a successful procedure to associate diseases with specific genomic regions. These regions are often large, containing hundreds of genes, which make experimental methods employed to identify the disease gene arduous and expensive. We present two methods to prioritize candidates for further experimental study: Common Pathway Scanning (CPS) and Common Module Profiling (CMP). CPS is based on the assumption that common phenotypes are associated with dysfunction in proteins that participate in the same complex or pathway. CPS applies network data derived from protein–protein interaction (PPI) and pathway databases to identify relationships between genes. CMP identifies likely candidates using a domain-dependent sequence similarity approach, based on the hypothesis that disruption of genes of similar function will lead to the same phenotype. Both algorithms use two forms of input data: known disease genes or multiple disease loci. When using known disease genes as input, our combined methods have a sensitivity of 0.52 and a specificity of 0.97 and reduce the candidate list by 13-fold. Using multiple loci, our methods successfully identify disease genes for all benchmark diseases with a sensitivity of 0.84 and a specificity of 0.63. Our combined approach prioritizes good candidates and will accelerate the disease gene discovery process.