Clinical, demographic, and epidemiologic characteristics of hepatitis B virus-infected patients at a tertiary public hospital in Presidente Prudente, State of São Paulo, Brazil

Abstract: INTRODUCTION: Few studies have addressed the primary characteristics of patients infected with hepatitis B virus (HBV) in the general population, especially those living in small- and medium-sized cities in Brazil. We aimed to determine the clinical, demographic, and epidemiologic characteristics of patients diagnosed with HBV who were followed up at an infectious diseases clinic of a public hospital in State of São Paulo, Brazil. METHODS: Medical records of patients aged >18 years and diagnosed with HBV infection between January 2000 and December 2013 were reviewed. RESULTS: Seventy-five patients were enrolled with male-female main infection-associated risk factors; 9 (12%) were co-infected with human immunodeficiency virus (HIV), 5 (6.7%) with hepatitis C virus (HCV), and 3 (4%) were co-infected with both HIV and HCV. Antiviral HBV therapy was applied in 21 (28%) patients and tenofovir monotherapy was the most prescribed medication. After approximately 2 years of antiviral treatment, the HBV-DNA viral load was undetectable in 12 (92.3%) patients and lower levels of alanine aminotransferase were found in these patients. CONCLUSIONS: Over a 13-year interval, very few individuals infected with HBV were identified, highlighting the barriers for caring for patients with HBV in developing countries. New measures need to be implemented to complement curative practices.

Infection of the central nervous system with dengue virus 3 genotype I causing neurological manifestations in Brazil

Abstract: A case of dengue virus 3 (DENV-3) genotype I infection with neurological manifestations occurred in Belo Horizonte, Minas Gerais in October 2012. The serotype was detected by PCR, and the genotype was assessed by sequencing and phylogenetic analysis of the C-prM region. The virus causing neurological manifestations clustered with other sequences of DENV-3 genotype I. Because neurological manifestations of DENV are possibly misdiagnosed in Brazil, this study serves as an alert of the importance of DENV diagnoses in CNS infections.

Epstein-Barr virus-positive gastric cancer: a distinct molecular subtype of the disease?

Abstract: Approximately 90% of the world population is infected by Epstein-Barr virus (EBV). Usually, it infects B lymphocytes, predisposing them to malignant transformation. Infection of epithelial cells occurs rarely, and it is estimated that about to 10% of gastric cancer patients harbor EBV in their malignant cells. Given that gastric cancer is the third leading cause of cancer-related mortality worldwide, with a global annual incidence of over 950,000 cases, EBV-positive gastric cancer is the largest group of EBV-associated malignancies. Based on gene expression profile studies, gastric cancer was recently categorized into four subtypes; EBV-positive, microsatellite unstable, genomically stable and chromosomal instability. Together with previous studies, this report provided a more detailed molecular characterization of gastric cancer, demonstrating that EBV-positive gastric cancer is a distinct molecular subtype of the disease, with unique genetic and epigenetic abnormalities, reflected in a specific phenotype. The recognition of characteristic molecular alterations in gastric cancer allows the identification of molecular pathways involved in cell proliferation and survival, with the potential to identify therapeutic targets. These findings highlight the enormous heterogeneity of gastric cancer, and the complex interplay between genetic and epigenetic alterations in the disease, and provide a roadmap to implementation of genome-guided personalized therapy in gastric cancer. The present review discusses the initial studies describing EBV-positive gastric cancer as a distinct clinical entity, presents recently described genetic and epigenetic alterations, and considers potential therapeutic insights derived from the recognition of this new molecular subtype of gastric adenocarcinoma.

Evaluation of human T-lymphotropic virus prevalence/co-infection rates for a four-year period in a non-metropolitan blood center in Southeast Brazil

Abstract: INTRODUCTION: Human T-lymphotropic virus types 1/2 (HTLV-1/2) are distributed worldwide and are endemic in specific regions. METHODS: Serological evaluation of the HTLV-1/2 prevalence and co-infection rate [human immunodeficiency virus (HIV), hepatitis B virus (HBV), hepatitis C virus (HCV), Chagas disease, and syphilis)] for 2011-2014 was performed with volunteer blood donors from the western part of São Paulo State. RESULTS: Serrana and Araçatuba had higher HTLV seroprevalence rates (0.1%); while Franca, Olimpia, and Bebedouro had lower seroprevalences (0.04%). Co-infection (HBV and syphilis) was present in 12.3% of HTLV-infected blood donors. CONCLUSIONS: Our findings provide data for the prevalence of HTLV in Brazil and demonstrate the importance of regional and global hemovigilance.

Prevention of respiratory syncytial virus infections

Respiratory syncytial virus is the most important cause of viral lower respiratory illness in infants and children worldwide. By the age of 2 years, nearly every child has become infected with respiratory syncytial virus and re-infections are common throughout life. Most infections are mild and can be managed at home, but this virus causes serious diseases in preterm children, especially those with bronchopulmonary dysplasia. Respiratory syncytial virus has also been recognized as an important pathogen in people with immunossupressive and other underlying medical problems and institutionalizated elderly, causing thousands of hospitalizations and deaths every year. The burden of these infections makes the development of vaccines for respiratory syncytial virus highly desirable, but the insuccess of a respiratory syncytial virus formalin-inactivated vaccine hampered the progress in this field. To date, there is no vaccine available for preventing respiratory syncytial virus infections, however, in the last years, there has been much progress in the understanding of immunology and immunopathologic mechanisms of respiratory syncytial virus diseases, which has allowed the development of new strategies for passive and active prophylaxis. In this article, the author presents a review about novel approaches to the prevention of respiratory syncytial virus infections, such as: passive immunization with human polyclonal intravenous immune globulin and humanized monoclonal antibodies (both already licensed for use in premature infants and children with bronchopulmonary dysplasia), and many different vaccines that are potential candidates for active immunization against respiratory syncytial virus.

Bronchiolitis, respiratory syncytial virus, and recurrent wheezing: what is the relationship?

Various follow-up studies of children hospitalized with bronchiolitis caused by respiratory syncytial virus have demonstrated that a significant proportion of infants (50%) have recurrent wheezing during childhood. Nevertheless, the relationship between these two entities, if any, has not been established. In order to explain this observation, several hypotheses have been proposed. The first suggests that some children could have an individual predisposition to bronchiolitis caused by respiratory syncytial virus and recurrent wheezing. The virus could be a marker of this condition, and the individual predisposition could in turn be related to an individual hypersensitivity to common allergens (atopy), airway hyperreactivity, or to some disorder related to pulmonary anatomy or physiology that was present before the acute episode of bronchiolitis. Another hypothesis proposes that respiratory syncytial virus could be directly responsible for recurrent wheezing. During an episode of bronchiolitis, the damage in the airway mucosa caused by the vital inflammatory response to infection contributes to sensitivity to other allergens or exposes irritant receptors, resulting in recurrent wheezing. For this review, we analyzed the studies that discuss these hypotheses with the purpose of clarifying the mechanisms for the important issue of recurrent wheezing in childhood.

Architecture and mosaics in recently discovered Palaeochristian basilicas

The excavations of the Dericik Early Christian Basilicas revealed the importance of the surrounding area of Bursa for understanding Early Christianity between the Late Roman and Early Byzantine periods. In the salvage excavations of 2001, the basic plan of the basilica (nave, narthex, presbyterium and apse) was revealed. The most important artefacts uncovered in that year were the mosaic pavements with geometric and plant ornaments and a grave located in the North Eastern corner of the church. The mosaic of the basilica was laid with the opus tessellatum technique on a thick mortar foundation with white, red, yellow, olive green and dark blue tesserae. A refrigerium scene is represented in the middle of the narthex mosaic. The mosaic in the centre of the nave is divided into parts, one of which with figures of birds inside octagons. In the transitional area between the nave and apse, three heavily damaged inscriptions have been conserved each of three or four lines, one of them indicating the wish of Epituchanos, diakôn, a church member.

Ocorrência de Cistos de CLINOSTOMUM MARGINATUM Rudolphi, 1819 "Yellow Spot Disease" em Filé de Jaraqui (SEMAPROCHILODUS INSIGNIS Schomburgk, 1814)

The parasitic inspection of 745 jaraqui fillets (Semaprochilodus insignis Schomburgk, 1814) from the rio Negro, Manaus (AM) - Brazil, show a low prevalence of metacercaria cysts of Clinostomum marginatum Rudolphi, 1819. From the collected samples since 1981 to 1983, only showed the cysts.

Mosaic maternal ancestry in the Great Lakes region of East Africa

The Great Lakes lie within a region of East Africa with very high human genetic diversity, home of many ethno-linguistic groups usually assumed to be the product of a small number of major dispersals. However, our knowledge of these dispersals relies primarily on the inferences of historical, linguistics and oral traditions, with attempts to match up the archaeological evidence where possible. This is an obvious area to which archaeogenetics can contribute, yet Uganda, at the heart of these developments, has not been studied for mitochondrial DNA (mtDNA) variation. Here, we compare mtDNA lineages at this putative genetic crossroads across 409 representatives of the major language groups: Bantu speakers and Eastern and Western Nilotic speakers. We show that Uganda harbours one of the highest mtDNA diversities within and between linguistic groups, with the various groups significantly differentiated from each other. Despite an inferred linguistic origin in South Sudan, the data from the two Nilotic-speaking groups point to a much more complex history, involving not only possible dispersals from Sudan and the Horn but also large-scale assimilation of autochthonous lineages within East Africa and even Uganda itself. The Eastern Nilotic group also carries signals characteristic of West-Central Africa, primarily due to Bantu influence, whereas a much stronger signal in the Western Nilotic group suggests direct West-Central African ancestry. Bantu speakers share lineages with both Nilotic groups, and also harbour East African lineages not found in Western Nilotic speakers, likely due to assimilating indigenous populations since arriving in the region ~3000 years ago.

The influence of the conservation status and changes in the rainfall regime on forest-savanna mosaic dynamics in Northern Brazilian Amazonia

Coupled carbon/climate models are predicting changes in Amazon carbon and water cycles for the near future, with conversion of forest into savanna-like vegetation. However, empirical data to support these models are still scarce for Amazon. Facing this scenario, we investigated whether conservation status and changes in rainfall regime have influenced the forest-savanna mosaic over 20 years, from 1986 to 2006, in a transitional area in Northern Amazonia. By applying a spectral linear mixture model to a Landsat-5-TM time series, we identified protected savanna enclaves within a strictly protected nature reserve (Maracá Ecological Station - MES) and non-protected forest islands at its outskirts and compared their areas among 1986/1994/2006. The protected savanna enclaves decreased 26% in the 20-years period at an average rate of 0.131 ha year-1, with a greater reduction rate observed during times of higher precipitation, whereas the non-protected forest islands remained stable throughout the period of study, balancing the encroachment of forests into the savanna during humid periods and savannization during reduced rainfall periods. Thus, keeping favorable climate conditions, the MES conservation status would continue to favor the forest encroachment upon savanna, while the non-protected outskirt areas would remain resilient to disturbance regimes. However, if the increases in the frequency of dry periods predicted by climate models for this region are confirmed, future changes in extension and directions of forest limits will be affected, disrupting ecological services as carbon storage and the maintenance of local biodiversity.

Nesting and neonates of the yellow-spotted river turtle (Podocnemis unifilis, Podocnemididae) in the Araguari River basin, eastern Amazon, Brazil

Predation and alteration of microhabitats may represent high risk for nesting of Amazonian turtles. This study aimed at investigating the nesting and body parameters of neonates of Podocnemis unifilis in the Araguari River basin, State of Amapá, Brazil. The spawning sites of this turtle were monitored along the Falsino River (a region with two reserves) and in the urban area of the Porto Grande city along the Araguari River, from August to December 2011. A total of 180 nests were found and the nesting occurred from September to November, with prevalence in October. Eggs hatching occurred in December. The mean incubation period was 63.5 ± 5.2 days and the eggs hatching success was 25%. However, approximately 80% of the nests had suffered predation mainly by humans, which occurred in both the protected areas of the reserves and the urban area. The pattern of nesting site choice was discussed. Egg size was larger than that previously described for the same turtle species in the other regions. The body condition index of neonates indicated a good use of vitelline reserves. The results indicate the urgent need for strategic actions to conserve and maintain the natural stocks of this relatively vulnerable turtle in the region.

Epidemiología y diversidad genética del virus de la hepatitis C en la región central de Argentina

El virus de la hepatitis C (HCV) es el principal agente causante de hepatitis crónica, en el mundo. Basado en la divergencia de la secuencia de nucleótidos se lo ha clasificado en 6 genotipos y varios subtipos. La distribución de genotipos ha sido asociada a vías específicas de transmisión y a los movimientos poblacionales. Esta diversidad constituye las bases del manejo clínico del paciente y provee la información decisiva para las estrategias terapéuticas. Asimismo, la heterogeneidad genética de HCV continúa siendo el mayor obstáculo para el desarrollo de vacunas y terapias efectivas. Estudios previos realizados en Argentina demuestran que la distribución de genotipos es diferente entre regiones geográficas muy cercanas. En general el genotipo 1 es el más prevalente en la región este de nuestro país y en la región central existe una particular alta prevalencia de genotipo 2 (HCV-2) (>55%), 2c, y HCV-1 en usuarios de drogas endovenosas. A fin de confirmar la existencia de dos eventos de transmisión independientes con claras implicancias clínico terapéuticas, el objetivo de este proyecto es completar y profundizar el estudio del proceso de diversificación de estos genotipos en Córdoba mediante análisis moleculares y bioinformáticos. Así, más muestras y otras regiones genómicas deberían ser analizadas (NS5B/E2) para determinar el origen y caracterizar los patrones de diversificación. En este sentido, un reciente estudio serológico, realizado por personal del ministerio de Salud, que involucró a 3782 individuos habitantes de cuatro áreas geográficas de la provincia de Córdoba reveló una alta prevalencia de HCV (>5%). Dichas muestras son la base del estudio propuesto en este plan

Estudio de epitopes de antígenos para interpretar su respuesta inmune. Modelo 1: Virus rubeola. Modelo 2: Bacteria Chlamydia trachomatis

El estudio de los epitopes de los antígenos permitirá no sólo la diferenciación de cepas sino también la interpretación correcta de la respuesta inmune. Modelo1: Rubeola es una enfermedad infecciosa caracterizada por una erupción localizada, fiebre y adenopatías, que por lo general se produce en niños de edad escolar o preescolar. El virus de la rubeola es el único miembro del género ribivirus en la familia de los Togavirus. Se sabe que es una partícula esférica que mide 60-90 nm y lleva la información genética en una sola cadena de RNA de polaridad positiva formando una cápside icosahédrica. Estructuralmente está compuesto por tres proteínas, una no glicosilada, asociada al RNA en la nucleocápside, llamada C, y dos glicoproteínas E1 y E2 que se encuentran en la envoltura del virus donde se presentan formando complejos por dímeros E1-E1 y E1-E2. Uno de los motivos por los que se realizan estudios comparativos entre diferentes cepas de virus rubeola radica en la observación de que la respuesta inmune frente a la infección con la cepa salvaje es más eficiente y duradera que la inducida por la cepa vacunal y que no se conocen fehacientemente si la capacidad teratogénica del virus depende de la cepa viral o del tipo de infección que se produce en la placenta y en el feto. La disminución o desaparición de la respuesta inmune específica puede posibilitar la reinfección de una persona vacunada, lo que adquiere particular importancia en el caso de las embarazadas. Es por ello que este estudio se centra en el análisis comparativo de las propiedades biológicas y estructurales de la cepa de virus rubeola de circulación local (cepa Córdoba y sus clones) frente a las cepas Glichrist (prototipo) y RA 27/3 (vacunal). Esta parte del trabajo contribuye al proyecto mundial de obtención de una vacuna sintética o infectiva para controlar la infección por el virus rubeola. Objetivos: 1. Estudiar la cinética de aparición de los epitopes en citoplasma y membrana celular con una técnica de inmunofuorescencia indirecta de células infectadas y bloquear a distintos pasos la vía de síntesis de proteínas en las células infectadas para producir el camino de síntesis del complejo E1-E1 hasta su aparición en membrana. 2. Realizar la técnica de mapeo peptídico para la proteína E2 en diferentes cepas. Modelo 2: Chlamydia trachomatis es una bacteria intracelular obligada de un ciclo de vida dimórfico, con una fase extracelular llamada Cuerpo Elemental (CE), que es la forma infectiva y metabólicamente inactiva y una fase intracelular llamada Cuerpo Reticular que es la forma replicada y metabólicamente activa de la bacteria. Es el agente etiológico de Enfermedades de Transmisión Sexual (ETS) más comunmente aislado en poblaciones de riesgo, además de ser la primera causa de ceguera prevenible a nivel mundial. El resultado de la infección con C. trachomatis puede terminar en inmunidad o enfermedad dependiendo de la interacción del sistema inmune del huésped con los antígenos chlamydiales específicos. El estudio de los antígenos que generan la respuesta inmune humoral como los tipos e isotipos de inmunoglobulinas producidas en esta respuesta, en las poblaciones con diferentes manifestaciones de la infección por C. trachomatis , podrían asociarse a un tipo de perfil de respuesta de linfocitos TH y dar un valor pronóstico de la evolución de la infección. Objetivo: 1. Separar y estudiar algunos de los más importantes antígenos de la bacteria Chlamydia trachomatis .