Evaluation of solid residues removed from a mangrove swamp in the Sao Vicente Estuary, SP, Brazil

Mangrove swamps are found in estuaries along the coastal plains of tropical regions and have be subjected to heavy occupation and use pressure due to their privileged locations and abundance of biological resources. The present work evaluated the ecological characteristics and solid wastes accumulated in eight areas along the Santos - Sao Vicente Estuary Complex. The superficially deposited residues at each sampling site were collected and subsequently washed, drained, counted, weighed and separated into classes according to their composition and predominant use. The predominant litter type in terms of density was plastic (62.81%) and, by weight, wood (55.53%). The greatest deposition of residues was associated with areas that were less inclined and that had low plant density levels, indicating that the presence of obstacles was not critical for retaining floating residues in mangrove areas. The presence of the most frequently encountered types of solid waste residues could be explained by local activities. (C) 2010 Elsevier Ltd. All rights reserved.

Produção, acúmulo e decomposição da serapilheira em uma restinga da Ilha do Mel, Paranaguá, PR, Brasil

Em uma formação de restinga na Ilha do Mel, Paranaguá-PR, foram avaliadas, mensalmente, a serapilheira produzida e a acumulada, em quadrados de 0,25 m², durante um ano (julho/1996-junho/1997). A decomposição, mensal e anual, foi estimada, indiretamente, pela razão entre serapilheira produzida e acumulada. A produção anual de serapilheira de 5,1 t.ha-1 encontra-se no limite inferior aos obtidos em outras florestas tropicais, e decorre, provavelmente, do solo arenoso e pobre em nutrientes. A produção e a decomposição foram sazonais, mais intensa durante o período mais quente e chuvoso, estando relacionadas, principalmente, à temperatura. O pequeno acúmulo de serapilheira (5,5t.ha-1.ano -1), e a ausência de variações mensais significativas neste compartimento denotam o sincronismo entre estes processos, que, aliado a taxa de decomposição anual relativamente baixa (kL = 0,92), representa grande valor adaptativo para o ecossistema, pois, pode minimizar as perdas por lixiviação e permitir um melhor aproveitamento dos nutrientes e água disponíveis momentaneamente. Tais mecanismos, bem como o caráter perenifólio das espécies, escleromorfia, e uma rede de raízes superficiais, possibilitam o desenvolvimento da comunidade vegetal sob as condições oligotróficas do solo. Estes, além do clima, parecem exercer uma forte influencia na determinação dos padrões de produção e decomposição da serapilheira.

Estrutura da população de Coleodactylus natalensis Freire, 1999 (Squamata: Sphaerodactylidae) no Parque Estadual Dunas de Natal, Rio Grande do Norte, Brasil

Coleodactylus natalensis Freire, 1999, an endemic species of Atlantic Forest fragments around the Natal municipality, Rio Grande do Norte State, Brazil, has as type locality the Parque Estadual Dunas de Natal (05º48 S to 05º53 S and 35º09 W to 35º12 W), one of the largest restinga (herb and shrub association on sand dunes along the Brazilian coastline) associate fragment, surrounded by urban zone, placed on setentrional Atlantic Forest limits. We made estimates on populational density, spatial distribution, habitat and microhabitat preferences and feeding ecological aspects like sazonal and sexual variations on diet, prey electivities and niche breadth. We randomly sampled ninety-six 50m2 quadrants in each of the four habitats identified in the study area. Were collected 49 specimens and their stomach contents were analyzed; prey items found were correlated with leaf-litter invertebrates from habitat samples. We found a 98,5 ± 75,5 individuals/ha density, in grouped distribution pattern on densest habitats and random distribution on others habitats. This species lives mostly on leaf-litter in forest habitats, in higher humidity points, with lower temperatures, deeper leaf litter and lower sea level elevations than the randomly chosen points in the study area. Isopoda and Aranae were the most important prey categories in numeric, frequency and volumetric terms. Niche breadth has an intermediate value and was variable in sexual and in habitat terms. There was no correlation between morfometric measures and prey size on diet. The C. natalensis population studied seems to be diet opportunist, although selects larger prey items. The Parque Estadual das Dunas do Natal has several indications of anthropic pressure from the surrounding urban area that may affects the local C. natalensis population. Thus, the fragility of this species calls for urgent conservation efforts

Modelling the benefits of habitat restoration in socio-ecological systems

Decisions affecting the management of natural resources in agricultural landscapes are influenced by both social and ecological factors. Models that integrate these factors are likely to better predict the outcomes of natural resource management decisions compared to those that do not take these factors into account. We demonstrate how Bayesian Networks can be used to integrate ecological and social data and expert opinion to model the cost-effectiveness of revegetation activities for restoring biodiversity in agricultural landscapes. We demonstrate our approach with a case-study in grassy woodlands of south-eastern Australia. In our case-study, cost-effectiveness is defined as the improvement in native reptile and beetle species richness achieved per dollar spent on a restoration action. Socio-ecological models predict that weed control, the planting of trees and shrubs, the addition of litter and timber, and the addition of rocks are likely to be the most cost-effective actions for improving reptile and beetle species richness. The cost-effectiveness of restoration actions is lower in remnant and revegetated areas than in cleared areas because of the higher marginal benefits arising from acting in degraded habitats. This result is contingent on having favourable landowner attitudes. Under the best-case landowner demographic scenarios the greatest biodiversity benefits are seen when cleared areas are restored. We find that current restoration investment practices may not be increasing faunal species richness in agricultural landscapes in the most cost-effective way, and that new restoration actions may be necessary. Integrated socio-ecological models support transparent and cost-effective conservation investment decisions. Application of these models highlights the importance of collecting both social and ecological data when attempting to understand and manage socio-ecological systems.

Population and individual-scale responses to patch size, isolation and quality in the hazel dormouse

Patch size, isolation and quality are key factors influencing species persistence in fragmented landscapes. However, we still lack a detailed understanding of how these variables exert their effects on populations inhabiting fragmented landscapes. At which ecological scale do they have an effect (e.g., individuals versus populations) and, on which demographic parameters? Answering these questions will identify the mechanisms that underlie population turnover rather than solely predicting it based on proxies (e.g., presence/absence data). We report the results of a large-scale, three-year study focused on the relative effects of patch size, isolation and quality on individuals and populations of an arboreal rodent, the hazel dormouse (Muscardinus avellanarius). We examined 30 sites nested within three landscapes characterized by contrasting levels of habitat amount and habitat quality (food resources). We quantified the effects of patch size and quality on the response of individuals (survival and litter size) and populations (density and colonization/extinction dynamics). We identified demographic mechanisms which led to population turnover. Habitat quality positively affected survival (not litter size) and population density (measured through an index). We infer that the decline in survival due to patch quality reduced patch recolonization rather than increasing extinction, while extinction was mainly affected by patch size. Our findings suggest that the effect of patch quality on individual and population parameters was constrained by the physical structure of the surrounding landscapes. At the same time, our results highlight the importance of preserving habitat quality to help the persistence of entire systems of patches.

Detectability of the global weed Hypochaeris radicata is influenced by species, environment and observer characteristics

Aims: To determine the detectability of a global weedy perennial weed Hypochaeris radicata and its relationship with five common observer, species and environmental variables. Methods: Trained independent observers conducted time-limited repeat surveys of H. radicata during autumn in an endangered grassy box-gum woodland ecosystem in south-east Australia. Single-species single-season site-occupancy modelling was used to determine if detectability of H. radicata was altered by five covariates, observer, litter height, grazing, maximum plant height and flowering state. Important Findings: Detectability for H. radicata varied significantly with observer, litter height, plant maximum height and flowering state, but not with grazing. Despite significant observer-specific variation, there was a consistent increase in detectability with plant height and when plants are in flower for all observers. Detectability generally decreased as litter height increases. Perfect or constant detection rates cannot be assumed in plant surveys, even for easily recognizable plants in simple survey conditions. Understanding how detectability is influenced by common survey variables can help improve the efficacy of plant monitoring programs by quantifying the extent of uncertainty in inferences made from survey data, or by determining optimal survey conditions to increase the reliability of collected data. For plants with traits similar to H. radicata, surveying when most plants are at maximum height or in flower, increasing search intensity when litter levels are high and minimizing observer-related heterogeneity are potentially simple and effective ways to reduce detection errors. We speculate that detection rates may be lower, more variable and involve additional covariates when surveying during the peak flowering spring season with the presence of more warm season and taller annual species.

Successional specialization in a reptile community cautions against widespread planned burning and complete fire suppression

Summary: Conservation of biodiversity in fire-prone regions depends on understanding responses to fire in animal communities and the mechanisms governing these responses. We collated data from an Australian semi-arid woodland reptile community (4796 individuals captured over 6 years) to: (i) determine the ability of commonly used shorter-term (2 years) surveys to detect reptile responses to time since fire (TSF) and (ii) investigate whether ecological traits of species reliably predicted their responses to fire. Of 16 reptile species analysed, four had responses to TSF consistent with shorter-term surveys and three showed no response to TSF. Nine species had responses to TSF not detected in previous studies using smaller but substantial subsets of the same data. Among the 13 affected species, times of peak abundance ranged from 1 to 50 years after fire. Nocturnal, burrowing species tended to be early successional and leaf-litter dwellers to be late successional, but these were only weak trends. Synthesis and applications. We found only limited support for a generalizable, trait-based model of succession in reptiles. However, our study revealed that the majority of common reptile species in our study region specialize on a post-fire successional stage and may therefore become threatened if homogeneous fire regimes predominate. Our study highlights the importance of interpreting results from time- or sample-limited fire studies of reptiles with the knowledge that many ecological responses may not have been detected. In such cases, an adaptive or precautionary approach to fire management may be necessary. We found only limited support for a generalizable, trait-based model of succession in reptiles. However, our study revealed that the majority of common reptile species in our study region specialize on a post-fire successional stage and may therefore become threatened if homogeneous fire regimes predominate. Our study highlights the importance of interpreting results from time- or sample-limited fire studies of reptiles with the knowledge that many ecological responses may not have been detected. In such cases, an adaptive or precautionary approach to fire management may be necessary.

Rapid recovery of an urban remnant reptile community following summer wildfire

Reptiles in urban remnants are threatened with extinction by increased fire frequency, habitat fragmentation caused by urban development, and competition and predation from exotic species. Understanding how urban reptiles respond to and recover from such disturbances is key to their conservation. We monitored the recovery of an urban reptile community for five years following a summer wildfire at Kings Park in Perth, Western Australia, using pitfall trapping at five burnt and five unburnt sites. The reptile community recovered rapidly following the fire. Unburnt sites initially had higher species richness and total abundance, but burnt sites rapidly converged, recording a similar total abundance to unburnt areas within two years, and a similar richness within three years. The leaf-litter inhabiting skink Hemiergis quadrilineata was strongly associated with longer unburnt sites and may be responding to the loss of leaf litter following the fire. Six rarely-captured species were also strongly associated with unburnt areas and were rarely or never recorded at burnt sites, whereas two other rarely-captured species were associated with burnt sites. We also found that one lizard species, Ctenotus fallens, had a smaller average body length in burnt sites compared to unburnt sites for four out of the five years of monitoring. Our study indicates that fire management that homogenises large areas of habitat through frequent burning may threaten some species due to their preference for longer unburnt habitat. Careful management of fire may be needed to maximise habitat suitability within the urban landscape.

Previous land use and climate influence differences in soil organic carbon following reforestation of agricultural land with mixed-species plantings

Reforestation of agricultural land with mixed-species environmental plantings (native trees and shrubs) can contribute to mitigation of climate change through sequestration of carbon. Although soil carbon sequestration following reforestation has been investigated at site- and regional-scales, there are few studies across regions where the impact of a broad range of site conditions and management practices can be assessed. We collated new and existing data on soil organic carbon (SOC, 0-30 cm depth, N = 117 sites) and litter (N = 106 sites) under mixed-species plantings and an agricultural pair or baseline across southern and eastern Australia. Sites covered a range of previous land uses, initial SOC stocks, climatic conditions and management types. Differences in total SOC stocks following reforestation were significant at 52% of sites, with a mean rate of increase of 0.57 ± 0.06 Mg C ha-1 y-1. Increases were largely in the particulate fraction, which increased significantly at 46% of sites compared with increases at 27% of sites for the humus fraction. Although relative increase was highest in the particulate fraction, the humus fraction was the largest proportion of total SOC and so absolute differences in both fractions were similar. Accumulation rates of carbon in litter were 0.39 ± 0.02 Mg C ha-1 y-1, increasing the total (soil + litter) annual rate of carbon sequestration by 68%. Previously-cropped sites accumulated more SOC than previously-grazed sites. The explained variance differed widely among empirical models of differences in SOC stocks following reforestation according to SOC fraction and depth for previously-grazed (R2 = 0.18-0.51) and previously-cropped (R2 = 0.14-0.60) sites. For previously-grazed sites, differences in SOC following reforestation were negatively related to total SOC in the pasture. By comparison, for previously-cropped sites, differences in SOC were positively related to mean annual rainfall. This improved broad-scale understanding of the magnitude and predictors of changes in stocks of soil and litter C following reforestation is valuable for the development of policy on carbon markets and the establishment of future mixed-species environmental plantings.

Pollination, herbivory, and habitat fragmentation: Their effects on the reproductive fitness of Angadenia berteroi, a native perennial plant of the south Florida pine rocklands

Angadenia berteroi is a tropical perennial subshrub of the pine rocklands with large yellow flowers that set very few fruits. My dissertation seeks to elucidate the factors that affect the reproductive fitness of Angadenia berteroi a native species of the south Florida pine rocklands. I provide novel information on the pollination biology of this native species. I also assess the effects of herbivory on growth and the reproductive success of A. berteroi. Finally, I elucidate how habitat fragmentation and quality are correlated with reproductive fitness of this native perennial plant.^ Using a novel experimental approach, I determined the most effective pollinator group. I used nylon fishing line of widths corresponding to proboscis diameter of the major groups of visitors to examine pollen removal and deposition. In the field, I estimated visitation frequency and efficacy of each pollinator type. Using potted plants, I exposed flowers to single visit from different types of pollinators to measure fruit set. I performed artificial defoliation with scissors on plants growing in the greenhouse to assess the effects of defoliation before flowering as well as during flowering. Additionally, I used structural equation modelling (SEM) to elucidate how A. berteroi reproductive fitness was affected by habitat fragmentation and quality. ^ My experiments provide evidence that Angadenia berteroi is specialized for bee pollination; though butterflies, skippers and others also visit its flowers, A. berteroi is exclusively pollinated by two native bees of the South Florida pine rocklands . This research also demonstrated that herbivory by the oleander moth may have direct and indirect effects on Angadenia berteroi growth and reproductive success. The SEM results suggested that habitat quality (litter depth and subcanopy cover) may favor reproduction in native species of the South Florida pine rocklands that are properly maintained by periodic fires and exotic control. Insights from this threatened and charismatic species may provide impetus to properly manage remaining pine rocklands in South Florida for this and other endemic understory species.^

Salmonella Enterica serovar Typhimurium Infection in Mouse Pregnancy

Salmonella are Gram-negative, intracellular food-borne pathogens that cause pregnancy complications. In pregnant mice, Salmonella enterica serovar Typhimurium (S.Tm) infection results in placental bacterial replication, inflammation, necrosis, and fetal loss by unknown mechanisms. Necroptosis, or programmed necrosis mediated by RIPK3 (receptor-interacting protein kinase 3), an inflammatory cell death pathway, is implicated in the pathogenesis of S.Tm in non-pregnant mice. This goal of this thesis was to investigate the role of necroptosis in the pathogenesis of S.Tm infection during mouse pregnancy. I hypothesized that elimination of the key necroptotic cell death protein RIPK3 would decrease placental inflammation and trophoblast cell death, and increase conceptus survival compared to controls. Mice expressing a functional Slc11a1 (encodes the natural resistance-associated macrophage protein 1, NRAMP1) gene with or without RIPK3 function (Ripk3-/-Slc11a1+/+ compared to Slc11a1+/+) were infected with 103 S.Tm by tail vein injection on gestational day (GD) 12. Mice were euthanized on GD 14 (48h post-infection) or GD 15 (72h post-infection) and implantation sites (IS) and maternal serum were harvested for analyses. In nearly all challenged mice (except one outlier), S.Tm were detected in most IS within a litter but there was limited immune cell infiltration, placental damage or cell death in Slc11a1 competent mice regardless of Ripk3 gene deletion. Maternal serum cytokine analyses confirmed lack of maternal immune responses to S.Tm infection. IS amongst the litter of a single dam (Ripk3-/-Slc11a1+/+ at 72h postinfection) displayed heavy but not universal placental S.Tm infection of decidual tissues and spongiotrophoblast, associated with elevated maternal serum pro-inflammatory cytokines. S.Tm infection of the fetal yolk sac (YS) was observed in 54.5% of IS from this dam. YS infection was confirmed in archival samples in mice expressing Ripk3 with intact Slc11a1 and in mice lacking functional Slc11a1. In Slc11a1 incompetent mice, S.Tm were detected in placental labyrinthine trophoblast. Based on the available data, this thesis suggests that Ripk3 and necroptosis have no significant roles in either promotion or prevention of progressive Salmonella infection during mouse pregnancy. It also provides pilot data that NRAMP1 controls placental localization and lethality due to YS infection.

Conserving long unburnt vegetation is important for bird species, guilds and diversity

Landscape-level wildfires have a major role in structuring faunal assemblages, particularly in fire-prone landscapes. These effects are mediated by changes to vegetation structure and composition that directly influence the availability of shelter, feeding and breeding resources. We investigated the response of a semi-arid shrubland bird community in Western Australia to the prevailing fire regime by examining the abundance, diversity and guild structure in relation to time since fire. We also examined vegetation structural attributes in relation to time since fire. We surveyed 32 sites ranging in age from 12 to 84 years since last fire. A total of 845 birds from 40 species were recorded. Vegetation structure varied with fire history with old and very old sites characterised by less bare ground, more leaf litter cover and greater canopy cover. Bird community composition varied with time since fire, driven by increased bird species richness and abundance of insectivores, granivores/frugivores, golden whistlers, grey shrike-thrush and red-capped robins with time since fire. Frequent, intense landscape-scale fires transform the landscape into homogeneous young shrublands, which may render vegetation unsuitable for several species and guilds.

A citizen science approach: a detailed ecological assessment of subtropical Reefs at Point Lookout, Australia.

Subtropical reefs provide an important habitat for flora and fauna, and proper monitoring is required for conservation. Monitoring these exposed and submerged reefs is challenging and available resources are limited. Citizen science is increasing in momentum, as an applied research tool and in the variety of monitoring approaches adopted. This paper aims to demonstrate an ecological assessment and mapping approach that incorporates both top-down (volunteer marine scientists) and bottom-up (divers/community) engagement aspects of citizen science, applied at a subtropical reef at Point Lookout, Southeast Queensland, Australia. Marine scientists trained fifty citizen scientists in survey techniques that included mapping of habitat features, recording of substrate, fish and invertebrate composition, and quantifying impacts (e.g., occurrence of substrate damage, presence of litter). In 2014 these volunteers conducted four seasonal surveys along semi-permanent transects, at five sites, across three reefs. The project presented is a model on how citizen science can be conducted in a marine environment through collaboration of volunteer researchers, non-researchers and local marine authorities. Significant differences in coral and algal cover were observed among the three sites, while fluctuations in algal cover were also observed seasonally. Differences in fish assemblages were apparent among sites and seasons, with subtropical fish groups observed more commonly in colder seasons. The least physical damage occurred in the most exposed sites (Flat Rock) within the highly protected marine park zones. The broad range of data collected through this top-down/bottom-up approach to citizen science exemplifies the projects' value and application for identifying ecosystem trends or patterns. The results of the project support natural resource and marine park management, providing a valuable contribution to existing scientific knowledge and the conservation of local reefs.

Reproductive cycle of Urolophus cruciatus in south-eastern Australia: does the species exhibit obligate or facultative diapause?

Observations of synchronous rapid growth of embryos and ovarian follicles in pregnant females during the half-year December–May leading to parturition, ovulation, mating, and fertilization suggest Urolophus cruciatus has the capacity for an annual reproductive cycle. Conversely, the higher proportion of the pregnant females in the population carrying eggs than carrying embryos in utero during December–May and all pregnant females in the population only carrying eggs in utero during June–November indicate a longer reproductive cycle. Analysis based on the usual assumptions implies that the species most likely exhibits a biennial cycle with ~18-month period of diapause following ovulation prior to ~6-month period of rapid embryogenesis. However, it is feasible that the period of the cycle is triennial with ~30-month period of diapause or alternatively diapause varies among individuals and varies from year to year. Rather than exhibiting a fixed-term reproductive cycle where obligatory diapause leads to parturition timed every year to provide favourable conditions for neonates, as suggested for several other chondrichthyan species, U. cruciatus may exhibit facultative diapause where the period of diapause and hence the reproductive cycle varies depending on the prevailing environmental conditions or density-dependent factors as described for many terrestrial species. U. cruciatus is highly matrotrophic (>4000 % wet mass gain from ovum to full-term embryo), litter size (1–4) increases with maternal length, sex ratio among embryos is 1:1, and male breeding condition varies seasonally with peak sperm production coinciding with female ovulation.

Reptile responses to fire and the risk of post-disturbance sampling bias

Altered fire regimes are a driver of biodiversity decline. To plan effective management, we need to know how species are influenced by fire and to develop theory describing fire responses. Animal responses to fire are usually measured using methods that rely on animal activity, but animal activity may vary with time since fire, potentially biasing results. Using a novel approach for detecting bias in the pit-fall trap method, we found that leaf-litter dependent reptiles were more active up to 6 weeks after fire, giving a misleading impression of abundance. This effect was not discovered when modelling detectability with zero-inflated binomial models. Two species without detection bias showed early-successional responses to time since fire, consistent with a habitat-accommodation succession model. However, a habitat specialist did not have the predicted low abundance after fire due to increased post-fire movement and non-linear recovery of a key habitat component. Interactions between fire and other processes therefore must be better understood to predict reptile responses to changing fire-regimes. We conclude that there is substantial bias when trapping reptiles after fire, with species that are otherwise hard to detect appearing to be abundant. Studies that use a survey method based on animal activity such as bird calls or animal movements, likely face a similar risk of bias when comparing recently-disturbed with control sites.