软体动物线粒体基因组学及分子系统发生研究

本研究以双壳纲、翼形亚纲、珍珠贝目、扇贝超科的栉孔扇贝(Chlamys farreri )、海湾扇贝(Argopecten irradians)和牡蛎超科巨蛎属(Crassostrea)的长牡蛎(C. gigas)、葡萄牙牡蛎(C. angulata)、熊本牡蛎(C. sikamea)、香港巨牡蛎(C. hongkongensis)和近江牡蛎(C. ariakensis)5种牡蛎及异齿亚纲、帘蛤目、帘蛤科的紫斑文蛤(Meretrix pethechialis)为研究对象，系统的研究了以上物种的线粒体基因组全序列的特点。并以线粒体12个蛋白质编码基因的序列，在氨基酸和核苷酸水平上构建了软体动物的分子系统发生树。本研究旨在为利用线粒体基因组全序列全面构建软体动物分子系统发生树，为软体动物的系统发生和进化研究提供一种新的思路和前期基础工作，本研究主要内容分为以下三个部分： 一、栉孔扇贝和海湾扇贝线粒体基因组序列分析及分子系统发生研究 采用Long-PCR技术扩增了栉孔扇贝和海湾扇贝线粒体全基因组，利用步移法结合文库构建的测序策略获得了线粒体基因组的序列。海湾扇贝线粒体全基因组长度为16,211 bp，栉孔扇贝接近全序列长度为20,789 bp。两个基因组都编码35个基因，包括12个蛋白质编码基因，2个rRNA和21个tRNA。与典型的动物线粒体基因组相比，两个基因组都缺少一个蛋白质编码基因atp8和2个trnS, 在海湾扇贝基因组中有1个trnF的重复，而在栉孔扇贝基因组中有1个trnM的重复。基因排列比较显示，尽管海湾扇贝、栉孔扇贝和巨扇贝分类学上属于同一扇贝科，但是它们的线粒体基因排列非常不同。在四种扇贝中，虾夷扇贝与栉孔扇贝的基因排列顺序非常相似；即使排除tRNA的比较，栉孔扇贝和海湾扇贝基因组仅仅共享三个小的基因块；而海湾扇贝与巨扇贝仅有一个相同的基因块。在所有的系统发生分析中，四种扇贝稳定的系统发生关系得到强有力的支持，海湾扇贝较其他三种扇贝较早的分化出来；栉孔扇贝比其他两种扇贝与虾夷扇贝亲缘关系更近。贝叶斯法和最大似然法分析都支持扇贝超科的单系发生。 二、巨蛎属牡蛎线粒体基因组全序列分析及分子系统发生研究 采用Long-PCR扩增技术和步移法结合文库构建的技术策略获得了巨蛎属C. gigas、C. angulata、C. sikamea、C. hongkongensis和C. ariakensis 5种牡蛎线粒体全基因组序列，并于GenBank已公布的美洲牡蛎C.virginica序列进行比较研究。C. gigas、C. angulata、C. sikamea、C. hongkongensis和C. ariakensis线粒体全基因组长度分别为18,225 bp、18,225 bp、18,243 bp、18,622 bp和18,414 bp，都长于C. virginica基因组17,244 bp的长度。本研究的5种牡蛎线粒体基因组都编码39个基因，包括12个蛋白质编码基因，2个rRNA和25个tRNA。与典型的线粒体基因组相比，都缺少一个蛋白质编码基因atp8，有trnM、trnK和trnQ 3个tRNA基因的重复，更特别的是基因组中的rrnL分为两段，这在其它线粒体基因组中未见报道，有一个重复的rrnS；而C. virginica基因组编码37个基因，与其他牡蛎相比，没有trnK和trnQ重复，只有一个rrnS。基因排列比较显示，巨蛎属的5种牡蛎C. gigas、C. angulata、C. sikamea、C. hongkongensis和C. ariakensis基因排列完全一致，而与C. virginica的基因排列相比仍然有较大的差别，有多个tRNA发生易位。系统发生分析显示，C. gigas和C. angulata首先聚在一起，然后与C. sikamea聚为一支。C. hongkongensis和C. ariakensis聚成一支。C. virginica为单独的一支。系统树清楚的显示出C. gigas和C. angulata以及C. hongkongensis和C. ariakensis非常近的亲缘关系，这也是长期以来，牡蛎分类学上的经典问题，有学者认为C. gigas和C. angulata为同一物种，线粒体基因组的数据显示C. gigas和C. angulata可能达到不同物种的差异。传统分类上的“近江牡蛎”的“白蚝”和“赤蚝”，线粒体序列差别明显，完全支持两种牡蛎新种名的制定。 三、紫斑文蛤线粒体基因组全序列分析及分子系统发生研究 采用Long-PCR扩增技术和步移法结合文库构建的技术策略获得了紫斑文蛤线粒体基因组全序列。该基因组全长19,567 bp，编码36个基因，包括12个蛋白质编码基因，2个rRNA和22个tRNA。与典型的线粒体基因组相比，缺少一个蛋白质编码基因atp8和1个trnS, 有1个trnQ基因的重复。基因排列比较显示，双壳类的基因排列在低的分类阶元时相对保守。在帘蛤科中，紫斑文蛤M. petechialis和菲律宾蛤仔V. philippinarum共享四个完全一致的基因块，两个大的基因块是cox1-L1-nad1-nad2-nad4L-I 和 cox2-P-cob-rrnL-nad4-H-E-S2-atp6-nad3-nad5，另两个小基因块只包括tRNA基因。在以氨基酸序列构建的分子系统树中，帘蛤科紫斑文蛤与菲律宾蛤仔首先聚在一起，然后，它们与A. tuberculata形成一个进化枝。这一枝与H. arctica结合起来，支持异齿亚纲单系发生。

磷虾声学评估系统——接收机及A/D���换器

本文所述为磷虾声学探测系统的一部分——接收机及高速A／D���换器。该系统的设计旨在克服过去南大洋科学考察所用声学评估系统信号补偿不够精确、动态范围较窄、实时处理能力较差等不足。接收机具有宽动态范围及精确的20LoG(R)和40LoG(R)损耗补偿，8位高速A／D���换将数据信号送计算机，使得生物量和声物反射能力的计算得以实时进行。

牦牛的分类学地位及起源研究:mtDNA D-loop序列的分析

牦牛的起源与属级分类学地位至今仍然存在一定的争议.我们测定了家养牦牛和野生牦牛线粒体控制区(D-loop)序列,并以此构建牦牛和牛属、野牛属、水牛属以及非洲水牛属相关种的系统发育树.研究结果表明线粒体D-loop区与Cyt b基因序列在构建牛族的系统发育具有同样重要的价值.系统发育关系显示野牛属的灭绝种草原野牛与现存种美洲野牛先聚合为一单系群,然后再和牦牛形成一单系分支,表明牦牛与野牛属的草原野牛、美洲野牛亲缘关系最近,具有最近的共同祖先,而与牛属的其它亚洲物种亲缘关系较远.因此,本研究不支持将牦牛独立为牦牛属--Poephagus,牛属与野牛属在分类上也应合并为一个属.基于上述研究结果和化石证据,我们进一步对牦牛起源的历史背景进行了讨论,认为牦牛与野牛属的分化是由于第四纪气候变化在欧亚大陆发生的,野牛通过白令陆桥进入北美;冰期结束后,由于欧亚大陆其它地区温度升高,牦牛只能局限分布在较为寒冷的青藏高原;而野牛属在北美先后分化为草原野牛和美洲野牛,前者可能是后者的直接祖先.

D���肉毒杀鼠素防治高原鼠兔灭效试验

针对江河源退化草地治理与示范项目要求，在果洛州玛沁县大武乡格多牧委会人工和半人工草场上，使用D���肉毒杀鼠素对高原鼠兔Ochotona curzoniae进行现场药效试验和大面积灭鼠。结果表明，0．1％和0.2％D���内毒杀鼠素毒饵时鼠兔具有良好的灭杀效果，且不污染环境，无二次中毒，对保护鼠粪天敌，维持生态平衡，控制害鼠种群数量回升，减少扩散，使治理后的草场植被再次免遭破坏等方面均具良好作用．

2-(2-Phenyl-1H-phenanthro-[9,10-d]imidazole-1-yl)-acetic acid (PPIA) and its application for determination of amines by high performance liquid chromatography with fluorescence detection and identification with mass spectroscopy/atmospheric pressure chemical ionization

A simple, sensitive, and mild method for the determination of amino compounds based on a condensation reaction with 1-ethyl-3-(3-dimethylaminopropyl)-carbodiimide hydrochloride (EDC-HCI) as the dehydrant with fluorescence detection has been developed. Amines were derivatized to their acidamides with labeling reagent 2-(2-phenyl-1H-phenanthro-[9,10-d]imidazole-1-yl)-acetic acid (PPIA). Studies on derivatization conditions indicated that the coupling reaction proceeded rapidly and smoothly in the presence of a base catalyst in acetonitrile to give the corresponding sensitively fluorescent derivatives with an excitation maximum at lambda(ex) 260nm and an emission maximum at lambda(em) 380nm. The labeled derivatives exhibited high stability and were enough to be efficiently analyzed by high-performance liquid chromatography. Identification of derivatives was carried out by online post-column mass spectrometry (LC/APCI-MS/MS) and showed an intense protonated molecular ion corresponding m/z [MH](+) under APCI in positive-ion mode. At the same time, the fluorescence properties of derivatives in various solvents or at different temperature were investigated. The method, in conjunction with a gradient elution, offered a baseline resolution of the common amine derivatives on a reversed-phase Eclipse XDB-C-8 column. LC separation for the derivatized amines showed good reproducibility with acetonitrile-water as mobile phase. Detection limits calculated from 0.78 pmol injection, at a signal-to-noise ratio of 3, were 3.1-18.2 fmol. The mean intra- and inter-assay precision for all amine levels were < 3.85% and 2.11%, respectively. Excellent linear responses were observed with coefficients of > 0.9996. The established method for the determination of aliphatic amines from real wastewater and biological samples was satisfactory. (c) 2006 Elsevier B.V. All rights reserved.

北京石花洞滴水沉积的季节变化及影响因素

Because of the high resolution, stalagmite laminae can play an important role in the paleoclimate reconstructions. However, few investigations for the formation mechanisms of stalagmite lamilae have been done. Based on two-year observation on calcite growth rate at the drip sites, three-year monitoring of hydrodynamics, physics and chemistry of drip waters at different drip sites and the surrounding environments inside and outside the Beijing Shihua Cave, the seasonal variations of calcite growth rate are revealed and the results can be concluded as follows: 1. The drip waters inside the Cave are mostly sourced from the summer rain, and its minimal response-time to the atmospheric precipitation is less than one day. There are three types of response relationships between the precipitation and the drip rate variations: rapid response type, time-lag response type and stable response type. For rapid response type, the drip discharge is recharged through the flow routes along intensive fractures and interconnectivities; for time-lag response type, the drip discharge is recharged by double-porosity system composed of a high conductivity, low storage capability conduit network and a low-conductivity high-storage capability rock matrix under variable boundary conditions; for stable response type, the drip discharge is mainly recharged by seepage flow and base flow. 2. The observation shows that, inside the Cave, the growth rate of calcite is generally lower in rainy seasons and higher in dry seasons. During the rainy seasons, the drip water is characterized by a lower pH value, higher [Ca2+], [Mg2+], [SO42-] and electrical conductivity (EC) values. According to the calculations of saturation index of calcite (SIc), pCO2 of the drip water, as well as the synthetical analysis of other possible factors, the calcite growth rate is found to be principally influenced by the drip water saturation index of calcite (SIc). And the drip rate and pCO2 in the drip water and in the cave air play the secondly important roles in this process. The recharge mode of heavy rainfall events in the rainy seasons should probably be the main driving force that controls the physicochemical properties and calcite sediment of the drip waters. The abrupt decrease of sedimentary rate and the sharp peak of DOC in drip water in the rainy season probably forms the thin opaque (luminescent under ultraviolet radiation) layers observed in the stalagmites, whereas the relatively higher sedimentary rate in the dry seasons may be responsible for the thicker bright layers. The investigation elucidated here preliminarily reveals the formation mechanism of the stalagmite laminae in Beijing Shihua Cave.

New progress in R&D of lower olefin synthesis

This paper gives a brief review of R&D researches for light olefin synthesis directly and indirectly from synthesis gas in the Dalian Institute of Chemical Physics (DICP). The first pilot plant test was on methanol to olefin (MTO) reaction and was finished in 1993, which was based on ZSM-5-type catalyst and fixed bed reaction. In the meantime, a new indirect method designated as SDTO (syngas via dimethylether to olefin) was proposed. In this process, metal-acid bifunctional catalyst was applied for synthesis gas to dimethylether(DME) reaction, and modified SAPO-34 catalyst that was synthesized by a new low-cost method with optimal crystal size was used to convert DME to light olefin on a fluidized bed reactor. The pilot plant test on SDTO was performed and finished in 1995. Evaluation of the pilot plant data showed that 190-200 g of DME were yielded by single-pass for each standard cubic meter of synthesis gas. For the second reaction, 1.880 tons of DME or 2.615 tons of methanol produced 1 ton of light olefins, which constitutes of 0.533 ton of ethylene, 0.349 ton of propylene and 0.118 ton of butene. DICP also paid some attention on direct conversion of synthesis gas to light olefins. A semi-pilot plant test (catalyst 1.8 1) was finished in 1995 with a CO conversion > 70% and a C(2)(=)-C(4)(=) olefin selectivity 71-74% in 1000 h. (C) 2000 Published by Elsevier Science B.V. All rights reserved.