Label-free immunoassay for porcine circovirus type 2 based on excessively tilted fiber grating modified with staphylococcal protein A

Using excessively tilted fiber grating (Ex-TFG) inscribed in standard single mode fiber, we developed a novel label-free immunoassay for specific detection of porcine circovirus type 2 (PCV2), which is a minim animal virus. Staphylococcal protein A (SPA) was used to modify the silanized fiber surface thus forming a SPA layer, which would greatly enhance the proportion of anti-PCV2 monoclonal antibody (MAb) bioactivity, thus improving the effectiveness of specific adsorption and binding events between anti-PCV2 MAbs and PCV2 antigens. Immunoassay experiments were carried out by monitoring the resonance wavelength shift of the proposed sensor under different PCV2 titer levels. Anti-PCV2 MAbs were thoroughly dissociated from the SPA layer by treatment with urea, and recombined to the SPA layer on the sensor surface for repeated immunoassay of PCV2. The specificity of the immunosensor was inspected by detecting porcine reproductive and respiratory syndrome virus (PRRSV) first, and PCV2 subsequently. The results showed a limit of detection (LOD) for the PCV2 immunosensor of ~9.371TCID50/mL, for a saturation value of ~4.801×103TCID50/mL, with good repeatability and excellent specificity.

Mike Heithaus brings a shark next to the boat to be measured, tagged, and sampled, Shark River

This material is based upon work supported by the National Science Foundation through the Florida Coastal Everglades Long-Term Ecological Research program under Cooperative Agreements #DBI-0620409 and #DEB-9910514. This image is made available for non-commercial or educational use only.

Phylogenetic analysis of within -host serially-sampled viral data

The primary goal of this dissertation is the study of patterns of viral evolution inferred from serially-sampled sequence data, i.e., sequence data obtained from strains isolated at consecutive time points from a single patient or host. RNA viral populations have an extremely high genetic variability, largely due to their astronomical population sizes within host systems, high replication rate, and short generation time. It is this aspect of their evolution that demands special attention and a different approach when studying the evolutionary relationships of serially-sampled sequence data. New methods that analyze serially-sampled data were developed shortly after a groundbreaking HIV-1 study of several patients from which viruses were isolated at recurring intervals over a period of 10 or more years. These methods assume a tree-like evolutionary model, while many RNA viruses have the capacity to exchange genetic material with one another using a process called recombination. ^ A genealogy involving recombination is best described by a network structure. A more general approach was implemented in a new computational tool, Sliding MinPD, one that is mindful of the sampling times of the input sequences and that reconstructs the viral evolutionary relationships in the form of a network structure with implicit representations of recombination events. The underlying network organization reveals unique patterns of viral evolution and could help explain the emergence of disease-associated mutants and drug-resistant strains, with implications for patient prognosis and treatment strategies. In order to comprehensively test the developed methods and to carry out comparison studies with other methods, synthetic data sets are critical. Therefore, appropriate sequence generators were also developed to simulate the evolution of serially-sampled recombinant viruses, new and more through evaluation criteria for recombination detection methods were established, and three major comparison studies were performed. The newly developed tools were also applied to "real" HIV-1 sequence data and it was shown that the results represented within an evolutionary network structure can be interpreted in biologically meaningful ways. ^

Annotated record and chemical composition of ferromanganese concretions and crusts sampled from the lakes and streams of Norway

The main objective of the project was to develop a geochemical method for exploration of ores associated with granitic rocks. Fe and Mn oxidates were sampled in streambeds and lakes from 129 localities in Southeastern Norway. 65 of these localities are situated in the northern Oslo Graben. The samples were examined mineralogically and chemically by a variety of methods. Geochemical maps of the element content in oxidates show regional distribution patterns for several elements. Sampling and analysis of oxidates can be used in exploration for mineralizations such as the Skrukkelia Mo-deposit in the northern Oslo Graben. New anomalies (especially for Zn and W) have been detected. Appendix I contains a description of samples, chemical and mineralogical determinations performed on the samples, backscattered electron image-, X-ray image- and scanning electron image pictures of the oxidate preparates. Appendix II contains spectral plots, point analysis with the microprobe, X-ray diffractograms, analytical results, correlation coefficient matrix, scatterplots, frequency distributions and information on data storage. Appendix III containS maps of the element content in oxidates.

(Table 1) Sympagic meiofauna and amphipods inhabiting the meltponds in the Central Arctic sampled during POLARSTERN cruise ARK-XXII/2

Meltponds on Arctic sea ice have previously been reported to be devoid of marine metazoans due to fresh-water conditions. The predominantly dark frequently also green and brownish meltponds observed in the Central Arctic in summer 2007 hinted to brackish conditions and considerable amounts of algae, possibly making the habitat suitable for marine metazoans. Environmental conditions in meltponds as well as sympagic meiofauna in new ice covering pond surfaces and in rotten ice on the bottom of ponds were studied, applying modified techniques from sea-ice and under-ice research. Due to the very porous structure of the rotten ice, the meltponds were usually brackish to saline, providing living conditions very similar to sub-ice water. The new ice cover on the surface had similar characteristics as the bottom layer of level ice. The ponds were thus accessible to and inhabitable by metazoans. The new ice cover and the rotten ice were inhabited by various sympagic meiofauna taxa, predominantly ciliates, rotifers, acoels, nematodes and foraminiferans. Also, sympagic amphipods were found on the bottom of meltponds. We suggest that, in consequence of global warming, brackish and saline meltponds are becoming more frequent in the Arctic, providing a new habitat to marine metazoans.

(Table 2) Fatty acid composition of polychaetes sampled during POLARSTERN cruise ANT-XXIV/2

The fatty acid (FA) composition of representatives belonging to 18 polychaete families from the Southern Ocean shelf and deep sea (600 to 5337 m) was analysed in order to identify trophic biomarkers and elucidate possible feeding preferences. Total FA content was relatively low with few exceptions and ranged from 1.0 to 11.6% of total body dry weight. The most prominent FA found were 20:5(n-3), 16:0, 22:6(n-3), 18:1(n-7), 20:4(n-6), 18:0, 20:1(n-11) and 18:1(n-9). For some polychaete families and species FA profiles indicated selective feeding on certain dietary components, like freshly deposited diatom remains (e.g., Spionidae, Fauveliopsidae and Flabelligeridae) or foraminiferans (e.g., Euphrosinidae, Nephtyidae and Syllidae). Feeding patterns were relatively consistent within families at the deep stations, while the FA composition differed between the deep and the shelf stations within the same family. Fatty alcohols, indicative of wax ester storage, were found in almost all families (in proportions of 0.0 to 29.3% of total FA and fatty alcohols). The development of this long-term storage mechanism of energy reserves possibly displays an evolutionary strategy.

Fixational saccades during grating detection and discrimination

Copyright © 2015 Elsevier Ltd. All rights reserved. This research was funded by French ANR Grant ANR-2010-BLAN-1432-01 (Visafix). The authors would like to thank Dr. Laurent Madelain and Dr. Claudio Simoncini for the helpful discussions during the development of the study.

Fixational saccades during grating detection and discrimination

Copyright © 2015 Elsevier Ltd. All rights reserved. This research was funded by French ANR Grant ANR-2010-BLAN-1432-01 (Visafix). The authors would like to thank Dr. Laurent Madelain and Dr. Claudio Simoncini for the helpful discussions during the development of the study.

2nd order Bragg rasonance generated in a 45° tilted fiber grating and its application in a fiber laser

We report the generation of a 13dB 2nd order Bragg resonance in a conventionally UV inscribed 45° tilted fiber grating, showing strong polarization dependency and its application for singe polarization output of a fiber laser. © 2010 Optical Society of America.

All fibre femtosecond pulse generation using an intracavity 45°-tilted fibre grating

We demonstrate an all-fibre erbium doped fibre laser mode-locked by using an intracavity 45°-Tilted Fibre Grating as a polarization element. The laser produces soliton-like pulses with ~600fs pulse duration and ~1nJ output energy at a repetition rate of 10.34MHz. © 2010 Optical Society of America.

Single polarisation output of erbium-doped fibre ring laser utilising a small tilted fibre grating structure

Single polarisation operation of a fibre ring laser was realised by employing an intra-cavity 9.3°-tilted fibre Bragg grating as an in-fibre polariser. The laser showed a polarisationextinction-ratio of ~ 31dB with a good stability. © 2010 Optical Society of America.