A report on the population structure of adult salmon and sea trout in the River Lune using scale samples - with reference to historical data.

During 1993, a comprehensive data set of scale readings, length and weight measurements was established for migratory salmonids on the River Lune. This information was collected using three methods of fish capture: 1. The Lune estuary commercial nets. 2. River Lune Forge weir fish trap. 3. River Lune rod catch scale returns. Additional information was contributed by the Kent, Leven and Duddon rod and commercial fisheries. The data shows that the salmon stock in 1993 was dominated by two year old smolts. This varies from year to year. The sea trout population displays a normal population curve in terms of numbers of fish in each age and weight class. The growth rate of salmon and sea trout is very similar even though salmon have the benefit of high sea feeding.

Ichthyoplankton community structure and comparative trophodynamics in an estuarine transition zone

Surveys were conducted to evaluate and compare assemblage structure and trophodynamics of ichthyoplankton, and their variability, in an estuarine transition zone. Environmental gradients in the saltfront region of the Patuxent River subestuary, Chesapeake Bay, were hypothesized to define spatiotemporal distributions and assemblages of ichthyoplankton. Larval fishes, zooplankton, and hydrographic data were collected during spring through early summer 2000 and 2001. Larvae of 28 fish species were collected and species richness was similar each year. Total larval abundance was highest in the oligohaline region down-estuary of the salt front in 2000, but highest at the salt front in 2001. Larvae of anadromous fishes were most abundant at or up-estuary of the salt front in both years. Two ichthyoplankton assemblages were distinguished: 1) riverine—characterized predominantly by anadromous species (Moronidae and Alosinae); and 2) estuarine—characterized predominantly by naked goby (Gobiosoma bosc) (Gobiidae). Temperature, dissolved oxygen, salinity-associated variables (e.g., salt-front location), and concentrations of larval prey, specifically the calanoid copepod Eurytemora affinis and the cladoceran Bosmina longirostris, were important indicators of larval fish abundance. In the tidal freshwater region up-estuary of the salt front, there was substantial diet overlap between congeneric striped bass (Morone saxatilis) and white perch (M. americana) larvae, and also larvae of alewife (Alosa pseudoharengus) (overlap= 0.71–0.93). Larval abundance, taxonomic diversity, and dietary overlap were highest within and up-estuary of the salt front, which serves to both structure the ichthyoplankton community and control trophic relationships in the estuarine transition zone.

Pelagic behavior of adult Greenland halibut (Reinhardtius hippoglossoides)

It is evident from several field experiments with vertical longlines and archival tags, as well as concurrent studies of predator-prey relationships, that adult specimens of the deep-water flatfish Greenland halibut (Reinhardtius hippoglossoides) make regular excursions several hundred meters through the water column. The distribution of longline catches within the water column is confined to a well-defined depth layer overlapping with the distribution of blue whiting (Micromesistius poutassou), an important prey species, and depth recordings from archival tags overlap with Atlantic herring (Clupea harengus), the other major fish prey. The degree of pelagic use varies with fish size as well as seasons. Smaller individuals are found further off the bottom, and pelagic activity is greatest during early autumn. Interaction with pelagic prey species can influence results from bottom trawl surveys.

How much does the fishery at Apo Island benefit from spillover of adult fish from the adjacent marine reserve?

The contribution of the no-take marine reserve at Apo Island, Philippines, to local fishery yield through “spillover” (net export of adult fish) was estimated. Spatial patterns of fishing effort, yield, and catch rates around Apo Island were documented daily in 2003−2004. Catch rates were higher near the reserve (by a factor of 1.1 to 2.0), but fishing effort was often lowest there. Higher catch rates near the reserve were more likely due to spillover than to low fishing intensity. Lower fishing effort near the reserve may have been due to 1) weather patterns, 2) traditional importance of other fishing grounds, 3) high variability in catch rates, 4) lower market value of target species, and 5) social pressures. The yield taken near the reserve was only 10% of the total yield, but the actual spillover contribution was probably much less than this. This study is one of the few to estimate the spillover contribution to overall yield and to document the responses of fishermen to spil

Abundance of adult horseshoe crabs (Limulus polylphemus) in Delaware Bay estimated from a bay-wide mark-recapture study

Estimates of the abundance of American horseshoe crabs (Limulus polyphemus) are important to determine egg production and to manage populations for the energetic needs of shorebirds that feed on horseshoe crab eggs. In 2003, over 17,500 horseshoe crabs were tagged and released throughout Delaware Bay, and recaptured crabs came from spawning surveys that were conducted during peak spawning. We used two release cohorts to test for a temporary effect of tagging on spawning behavior and we adjusted the number of releases according to relocation rates from a telemetry study. The abundance estimate was 20 million horseshoe crabs (90 % confidence interval: 13−28 million), of which 6.25 million (90% CI: 4.0−8.8 million) were females. The combined harvest rate for Delaware, New Jersey, Virginia, and Maryland in 2003 was 4% (90% CI: 3−6%) of the abundance estimate. Over-wintering of adults in Delaware Bay could explain, in part, differences in estimates from ocean-trawl surveys. Based on fecundity of 88,000 eggs per female, egg production was 5.5×1011 (90% CI: 3.5×1011, 7.7×1011), but egg availability for shorebirds also depended on overlap between horseshoe crab and shorebird migrations, density-dependent bioturbation, and wave-mediated vertical transport.

Influence of Extracellular Matrix Components on the Expression of Integrins and Regeneration of Adult Retinal Ganglion Cells

Purpose Retinal ganglion cells (RGCs) are exposed to injury in a variety of optic nerve diseases including glaucoma. However, not all cells respond in the same way to damage and the capacity of individual RGCs to survive or regenerate is variable. In order to elucidate factors that may be important for RGC survival and regeneration we have focussed on the extracellular matrix (ECM) and RGC integrin expression. Our specific questions were: (1) Do adult RGCs express particular sets of integrins in vitro and in vivo? (2) Can the nature of the ECM influence the expression of different integrins? (3) Can the nature of the ECM affect the survival of the cells and the length or branching complexity of their neurites? Methods Primary RGC cultures from adult rat retina were placed on glass coverslips treated with different substrates: Poly-L-Lysine (PL), or PL plus laminin (L), collagen I (CI), collagen IV (CIV) or fibronectin (F). After 10 days in culture, we performed double immunostaining with an antibody against beta III-Tubulin to identify the RGCs, and antibodies against the integrin subunits: alpha V, alpha 1, alpha 3, alpha 5, beta 1 or beta 3. The number of adhering and surviving cells, the number and length of the neurites and the expression of the integrin subunits on the different substrates were analysed. Results PL and L were associated with the greatest survival of RGCs while CI provided the least favourable conditions. The type of substrate affected the number and length of neurites. L stimulated the longest growth. We found at least three different types of RGCs in terms of their capacity to regenerate and extend neurites. The different combinations of integrins expressed by the cells growing on different substrata suggest that RGCs expressed predominantly alpha 1 beta 1 or alpha 3 beta 1 on L, alpha 1 beta 1 on CI and CIV, and alpha 5 beta 3 on F. The activity of the integrins was demonstrated by the phosphorylation of focal adhesion kinase (FAK). Conclusions Adult rat RGCs can survive and grow in the presence of different ECM tested. Further studies should be done to elucidate the different molecular characteristics of the RGCs subtypes in order to understand the possible different sensitivity of different RGCs to damage in diseases like glaucoma in which not all RGCs die at the same time.

Weed control by adult and juvenile tilapia Tilapia rendalli in rainfed ponds

Two studies were conducted in consecutive years over the time period 14 January to 1 July to determine whether labor-savings and fish growth enhancement could be achieved by stocking Tilapia rendalli directly into ponds containing weeds left from a dry period. Six replicates 200 sq. m ponds located at the Malawi National Aquaculture Centre, Domasi were drained, left dry for 63 days and natural growth of weeds was allowed. All ponds were stocked with 200 T. rendalli fingerlings (study 1) or adults (study 2) averaging 4.6 g (40 mm TL) and 47.7 (130 mm TL), respectively. For T. rendalli juveniles, final standing stock, growth and offspring production were significantly (P<0.05) better in fed than in weedy ponds. Average weight of fingerlings were significantly (P<0.05) different between the two treatments. For T. rendalli adults, final standing stock, growth and offspring production were not affected by the presence of weeds.

Cosmological constrains on fast transition Unified Dark Matter models

In this work we show the results obtained applying a Unified Dark Matter (UDM) model with a fast transition to a set of cosmological data. Two different functions to model the transition are tested, and the feasibility of both models is explored using CMB shift data from Planck [1], Galaxy Clustering data from [2] and [3], and Union2.1 SNe Ia [4]. These new models are also statistically compared with the ACDM and quiessence models using Bayes factor through evidence. Bayesian inference does not discard the UDM models in favor of ACDM.

Proteomic Analysis of the Ubiquitin Landscape in the Drosophila Embryonic Nervous System and the Adult Photoreceptor Cells

Background Ubiquitination is known to regulate physiological neuronal functions as well as to be involved in a number of neuronal diseases. Several ubiquitin proteomic approaches have been developed during the last decade but, as they have been mostly applied to non-neuronal cell culture, very little is yet known about neuronal ubiquitination pathways in vivo. Methodology/Principal Findings Using an in vivo biotinylation strategy we have isolated and identified the ubiquitinated proteome in neurons both for the developing embryonic brain and for the adult eye of Drosophila melanogaster. Bioinformatic comparison of both datasets indicates a significant difference on the ubiquitin substrates, which logically correlates with the processes that are most active at each of the developmental stages. Detection within the isolated material of two ubiquitin E3 ligases, Parkin and Ube3a, indicates their ubiquitinating activity on the studied tissues. Further identification of the proteins that do accumulate upon interference with the proteasomal degradative pathway provides an indication of the proteins that are targeted for clearance in neurons. Last, we report the proof-of-principle validation of two lysine residues required for nSyb ubiquitination. Conclusions/Significance These data cast light on the differential and common ubiquitination pathways between the embryonic and adult neurons, and hence will contribute to the understanding of the mechanisms by which neuronal function is regulated. The in vivo biotinylation methodology described here complements other approaches for ubiquitome study and offers unique advantages, and is poised to provide further insight into disease mechanisms related to the ubiquitin proteasome system.