Light-related photosynthetic characteristics of freshwater rhodophytes

Photosynthetic characteristics in response to irradiance were analysed in 21 field and culture populations of thirteen freshwater red algal species applying two distinct techniques (chlorophyll fluorescence and oxygen evolution). Photosynthesis-irradiance (PI) curves indicated adaptations to low irradiances in all species analysed, essentially characterized by occurrence of photoinhibition, low values of the saturation parameter (I-k < 225 mu mol m(-2) s(-1)) and compensation irradiance (I-c < 20 mu mol m(-2) s(-1)) and relatively high values of the effective quantum yield of photosystem II (Delta F/F'(m) >= 45). These characteristics have been reported in freshwater red algae and were confirmed from data based on the two techniques, indicating they are typically shade-adapted plants. on the other hand, some species (e.g. Batrachospermum delicatulum) can tolerate high irradiances (up to 2400 mu mol m(-2) s(-1)), suggesting they have mechanisms that enable them to avoid photodarnage of the photosynthetic apparatus. One of these mechanisms is the increase in dissipation of excessive energy captured by reaction centres after exposure to continuous irradiance, as reflected by the non-photochemical quenching fluorescence parameter in dark/light induction curves. Photo-inhibition occurred in all algae tested by both techniques. Light acclimation was evident particularly in field populations, as revealed by lower values of the saturation parameter (Ik) and the compensation irradiance (I-c) and higher values of Delta F/F'(m) in algae under low irradiances (shaded or heavily shaded stream segments), and vice-versa. Forms living within the boundary layer (e.g. crusts), in a region of reduced current velocity, tended to be more shade-adapted than semi-erect plants (e.g. non-mucilaginous or mucilaginous filaments), as indicated by highest values of photosynthetic efficiency (alpha = 0.31) and effective quantum yield (Delta F/F'(m) = 0.88) under natural conditions. Higher photo- synthetic rates (P-max) for the same species or population were observed under culture than field conditions when measured with the oxygen evolution technique, whereas the opposite trend was observed using chlorophyll fluorescence. (c) 2005 Elsevier B.V. All rights reserved.

Light-related photosynthetic characteristics of lotic macroalgae

Photosynthetic characteristics in response to irradiance were analysed in 42 populations of 33 macroalgal species by two distinct techniques (chlorophyll fluorescence and oxygen evolution). Photosynthesis-irradiance (PI) curves based on the two techniques indicated adaptations to low irradiance reflected by low saturation values, high to moderate values of photosynthetic efficiency (alpha) and photoinhibition (beta), for Bacillariophyta and Rhodophyta, which suggests they are typically shade-adapted algae. In contrast, most species of Chlorophyta were reported as sun adapted algae, characterized by high values of I-k and low of alpha, and lack of or low photoinhibition. Cyanophyta and Xanthophyta were intermediate groups in terms of light adaptations. Photoinhibition was observed in variable degrees in all algal groups, under field and laboratory conditions, which confirms that it is not artificially induced by experimental conditions, but is rather a common and natural phenomenon of the lotic macroalgae. Low values of compensation irradiance (I-c) were found, which indicate that these algae can keep an autotrophic metabolism even under very low irradiances. High ratios (>2) of photosynthesis/respiration were found in most algae, which indicates a considerable net gain. These two physiological characteristics suggest that macroalgae may be important primary producers in lotic ecosystems. Saturation parameters (I-k and I-s) occurred in a relatively narrow range of irradiances (100-400 mumol photons m(-2) s(-1)), with some exceptions (higher in some filamentous green algae or lower in red algae). These parameters were way below the irradiances measured at collecting sites for most algae, which means that most of the available light energy was not photochemically converted via photosynthesis. Acclimation to ambient PAR was observed, as revealed by lower values of I-k and I-c and higher values of alpha and quantum yield in algae from shaded streams, and vice versa. Forms living within the boundary layer (crusts) showed responses of shade-adapted species and had the highest values of P-max, alpha and quantum yield, whereas the opposite trend was observed in gelatinous forms (colonies and. laments). These results suggests adaptation to the light regime rather than functional attributes related to the growth form.

Microhabitat and plant structure of Compsopogon coeruleus (Compsopogonaceae, Rhodophyta) populations in streams from São Paulo State, southeastern Brazil

Microhabitat distribution was investigated in three populations of C. coeruleus to determine the distributional patterns and their controlling factors, as well as morphometric adaptations to varying conditions on a scale of a few centimetres. Morphometric variations and their relations with physical variables (current velocity, irradiance, depth and type of substratum) revealed some particular characteristics for each population and indicate particular adaptations. However, some trends were clear: 1) larger plants (length and/or diameter) produced a higher quantity of monosporangia in the three populations; 2) plant length and diameter were positively correlated in two populations; 3) plant diameter was positively correlated with current velocity in two populations; 4) higher percent cover was associated with substrata composed of macrophytes in two populations. C. coeruleus occurred under relatively wide microhabitat conditions and had high niche width values, suggesting a tolerance to considerable variation in physical variables. These characteristics contribute to the species' wide distribution in Brazilian streams, both spatial (at distinct scales) and seasonal. (C) ADAC / Elsevier, Paris.

Contrasting intra versus interspecies DNA sequence variation for representatives of the Batrachospermales (Rhodophyta): Insights from a DNA barcoding approach

Sixty-five accessions of the species-rich freshwater red algal order Batrachospermales were characterized through DNA sequencing of two regions: the mitochondrial cox1 gene (664 bp), which is proposed as the DNA barcode for red algae, and the UPA (universal plastid amplicon) marker (370 bp), which has been recently identified as a universally amplifying region of the plastid genome. upgma phenograms of both markers were consistent in their species-level relationships, although levels of sequence divergence were very different. Intraspecific variation of morphologically identified accessions for the cox1 gene ranged from 0 to 67 bp (divergences were highest for the two taxa with the greatest number of accessions; Batrachospermum helminthosum and Batrachospermum macrosporum); while in contrast, the more conserved universal plastid amplicon exhibited much lower intraspecific variation (generally 0-3 bp). Comparisons to previously published mitochondrial cox2-3 spacer sequences for B. helminthosum indicated that the cox1 gene and cox2-3 spacer were characterized by similar levels of sequence divergence, and phylogeographic patterns based on these two markers were consistent. The two taxa represented by the largest numbers of specimens (B. helminthosum and B. macrosporum) have cox1 intraspecific divergence values that are substantially higher than previously reported, but no morphological differences can be discerned at this time among the intraspecific groups revealed in the analyses. DNA barcode data, which are based on a short fragment of an organellar genome, need to be interpreted in conjunction with other taxonomic characters, and additional batrachospermalean taxa need to be analyzed in detail to be able to draw generalities regarding intraspecific variation in this order. Nevertheless, these analyses reveal a number of batrachospermalean taxa worthy of more detailed DNA barcode study, and it is predicted that such research will have a substantial effect on the taxonomy of species within the Batrachospermales in the future.

MOLECULAR PHYLOGENY of THE GENUS KUMANOA (BATRACHOSPERMALES, RHODOPHYTA)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

An evaluation of ocean color model estimates of marine primary productivity in coastal and pelagic regions across the globe

Nearly half of the earth's photosynthetically fixed carbon derives from the oceans. To determine global and region specific rates, we rely on models that estimate marine net primary productivity (NPP) thus it is essential that these models are evaluated to determine their accuracy. Here we assessed the skill of 21 ocean color models by comparing their estimates of depth-integrated NPP to 1156 in situ C-14 measurements encompassing ten marine regions including the Sargasso Sea, pelagic North Atlantic, coastal Northeast Atlantic, Black Sea, Mediterranean Sea, Arabian Sea, subtropical North Pacific, Ross Sea, West Antarctic Peninsula, and the Antarctic Polar Frontal Zone. Average model skill, as determined by root-mean square difference calculations, was lowest in the Black and Mediterranean Seas, highest in the pelagic North Atlantic and the Antarctic Polar Frontal Zone, and intermediate in the other six regions. The maximum fraction of model skill that may be attributable to uncertainties in both the input variables and in situ NPP measurements was nearly 72%. on average, the simplest depth/wavelength integrated models performed no worse than the more complex depth/wavelength resolved models. Ocean color models were not highly challenged in extreme conditions of surface chlorophyll-a and sea surface temperature, nor in high-nitrate low-chlorophyll waters. Water column depth was the primary influence on ocean color model performance such that average skill was significantly higher at depths greater than 250 m, suggesting that ocean color models are more challenged in Case-2 waters (coastal) than in Case-1 (pelagic) waters. Given that in situ chlorophyll-a data was used as input data, algorithm improvement is required to eliminate the poor performance of ocean color NPP models in Case-2 waters that are close to coastlines. Finally, ocean color chlorophyll-a algorithms are challenged by optically complex Case-2 waters, thus using satellite-derived chlorophyll-a to estimate NPP in coastal areas would likely further reduce the skill of ocean color models.

Photosynthetic performance of freshwater Rhodophyta in response to temperature, irradiance, pH and diurnal rhythm

Responses of net photosynthetic rates to temperature, irradiance, pH/inorganic carbon and diurnal rhythm were analyzed in 15 populations of eight freshwater red algal species in culture and natural conditions. Photosynthetic rates were determined by oxygen concentration using the light and dark bottles technique. Parameters derived from the photosynthesis-irradiance curves indicated adaptation to low irradiance for all freshwater red algae tested, confirming that they tend to occur under low light regimes. Some degree of photoinhibition (β = -0.33-0.01 mg O2 g-1 DW h-1 (μmol photons m-2 s-1)-1) was found for all species/populations analyzed, whereas light compensation points (lc) were very low (≤ 2 μmol photons m- photons s-1) for most algae tested. Saturation points were low for all algae tested (lk = 6-54 μmol photons m-2 S-1; lS = 20-170 μmol photons m-2 s-1). Rates of net photosynthesis and dark respiration responded to the variation in temperature. Optimum temperature values for net photosynthesis were variable among species and populations so that best performances were observed under distinct temperature conditions (10, 15, 20 or 25°C). Rates of dark respiration exhibited an increasing trend with temperature, with highest values under 20-25°C. Results from pH experiments showed best photosynthetic performances under pH 8.5 or 6.5 for all but one species, indicating higher affinity for inorganic carbon as bicarbonate or indistinct use of bicarbonate and free carbon dioxide. Diurnal changes in photosynthetic rates revealed a general pattern for all algae tested, which was characterized by two relatively clear peaks, with some variations around it: a first (higher) during the morning (07.00-11.00 hours.) and a second (lower) in the afternoon (14.00-18.00 hours). Comparative data between the 'Chantransia' stage and the respective gametophyte for one Batrachospermum population revealed higher values (ca 2-times) in the latter, much lower than previously reported. The physiological role of the 'Chantransia' stage needs to be better analyzed.

Respostas fisiológicas de duas espécies de algas vermelhas continentais ao empobrecimento de fósforo e nitrogênio inorgânicos

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Respostas de curto período das características fotossintéticas da alga vermelha Batrachospermum delicatulum a temperatura e irradiância

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Efeitos da irradiância e da composição espectral da luz sobre o estabelecimento e desenvolvimento de comunidades de macroalgas lóticas em substratos artificiais

Pós-graduação em Ciências Biológicas (Biologia Vegetal) - IBRC

Paleoambiente e diagênese da formação Itaituba, carbonífero da bacia do Amazonas, com base em testemunho de sondagem, região de Uruará, Pará

A Formação Itaituba de idade carbonífera representa a sedimentação carbonática de depósitos transgressivos do Grupo Tapajós da Bacia do Amazonas. A sucessão Itaituba é interpretada como depósitos de planície de maré mista, constituídos de calcários fossilíferos, dolomitos finos, arenitos finos a grossos e subordinadamente siltitos avermelhados, evaporitos e folhelhos negros. A análise de fácies e microfácies do testemunho de sondagem da região de Uruará, Estado do Pará, permitiu individualizar dezenove fácies agrupadas em cinco associações: planície de maré (AF1), canal de maré (AF2), laguna (AF3), barra bioclástica (AF4) e plataforma externa (AF5). AF1 é composta por arenito fino com rip-up clasts e gretas de contração, marga com grãos de quartzo e feldspato, dolomudstone laminado com grãos terrígenos e dolomito fino silicificado, com intercalação de argilito com grãos de quartzo disseminados, dolomitizado e localmente com sílica microcristalina. AF2 consiste em arenito médio a grosso com estratificação cruzada acanalada, recoberta por filmes pelíticos nos foresets, arenito muito fino a fino com acamamento wavy, siltito laminado com falhas sinsedimentares e acamamento convoluto. AF3 é constituída de siltito vermelho maciço, mudstone com fósseis, floatstone com braquiópodes e pirita disseminada e mudstone maciço com frequentes grãos de quartzo. AF4 e AF5 exibem abundantes bioclastos representados por espinhos e fragmentos de equinodermas, conchas, fragmentos e espinhos de braquiópodes, ostracodes, foraminíferos, algas vermelhas e conchas de bivalves. AF4 é formada por grainstone oolítico fossilífero e grainstone com terrígenos principalmente grãos de quartzo monocristalino e AF5 se compõe de wackestone fossilífero, wackestone com terrígenos e mudstone maciço com grãos de quartzo monocristalino. Subarcósios (AF1), arcósios (AF2) e arcósios líticos (AF2) são os tipos de arenitos da sucessão Itaituba e apresentam como principais constituintes grãos de quartzo monocristalino e policristalino, K-feldspato, plagioclásio, pirita, muscovita detrítica, fragmento de rocha pelítica, metamórfica e chert e raros bioclastos. O cimento é de calcita espática não ferrosa, óxido/hidróxido de ferro e sobrecrescimento de sílica. A porosidade é intergranular, móldica e às vezes alongada, sem permeabilidade perfazendo até 11% da rocha. Os processos diagenéticos dos arenitos são compactação física, sobrecrescimento de sílica, cimentação de calcita, formação de matriz diagenética, compactação química, substituição de grãos, autigênese de pirita, formação de óxido/hidróxido de ferro e alteração do plagioclásio. Os processos diagenéticos dos carbonatos são: micritização, neomorfismo, colomitização, fraturamento, compactação química, cimentação de calcita, dissolução secundária e autigênese de minerais. A sucessão da Formação Itaituba representa um sistema de laguna/planície de maré ligada a uma plataforma marinha carbonática. Planícies de maré desenvolveram-se nas margens das lagunas e eram periodicamente supridas por influxos de terrígenos finos (silte) que inibiam a precipitação carbonática. Barras bioclásticas eram cortadas por canais de maré (inlet) que conectavam a laguna com a plataforma rasa rica em organismos bentônicos.

The roles of environmental conditions and spatial factors in controlling stream macroalgal communities

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Grãos em carbonatos marinhos cretácicos da Bacia Potiguar: formações Ponta do Mel e Jandaíra

This work aims to identify and photograph grains that compose important Cretaceous carbonate units of the Potiguar Basin, represented by the Ponta do Mel and Jandaíra formations (Albian-Campanian). Petrographic investigation of thin sections was essential. The samples studied come from wells and surface samples from the collection UNESPetro – UNESP, Rio Claro. In the Ponta do Mel Formation, the grains consist of ooids, oncoids, peloids and bioclasts. Regarding to the identified bioclasts, the solenoporacean red algae, mollusks (bivalves and gastropods), echinoids, foraminifera, ostracods and worms were the dominant elements. In the Jandaíra Formation, the grains are composed by ooids, peloids and bioclasts, which are represented by green algae, mollusks (bivalves and gastropods), benthic foraminifera miliolids, worms, echinoderms and ostracods. The grains found in the Ponta do Mel Formation are somewhat similar to those found in the Jandaíra Formation, with the exception of calcareous algae. The subsurface material from the Ponta do Mel Formation is derived from the upper part of the unit, representing marine high-energy carbonates, which also contains ooids and Trocholina. The samples of Jandaíra Formation, collected in outcrops, often contain green algae, mollusks and miliolids, and come from inner shelf and lagoon facies previously described

Physiological performances of two populations of Compsopogon caeruleus (Rhodophyta) to inorganic nitrogen and phosphorus impoverishment

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)