Rapid detection of porcine circovirus type 2 by loop-mediated isothermal amplification

A method of loop-mediated isothermal amplification (LAMP) was employed to develop a rapid and simple detection system for porcine circovirus type 2 (PCV2). The amplification could be finished in 60 min under isothermal condition at 64 degrees C by employing a set of four primers targeting the cap gene of PCV2. The LAMP assay showed higher sensitivity than the conventional PCR, with a detection limit of five copies per tube of purified PCV2 genomic DNA. No cross-reactivity was observed from the samples of other related viruses including porcine circovirus type 1 (PCV1), porcine parvovirus (PPV), porcine pseudorabies virus (PRV) and porcine reproductive and respiratory syndrome virus (PRRSV). The detection rate of PCV2 LAMP for 86 clinical samples was 96.5% and appeared greater than that of the PCR method. The LAMP assay reported can provide a rapid yet simple test of PCV2 suitable for laboratory diagnosis and pen-side detection due to ease of operation and the requirement of only a regular water bath or heat block for the reaction. (c) 2008 Elsevier B.V. All rights reserved.

Decomposition of Noncommutative U(1) Gauge Potential

We investigate the decomposition of noncommutative gauge potential (A) over cap (i), and find that it has inner structure, namely, (A) over cap (i) can he decomposed in two parts, (b) over cap (i) and (a) over cap (i), where (b) over cap (i) satisfies gauge transformations while (a) over cap (i) satisfies adjoint transformations, so close the Seiberg-Witten mapping of noncommutative, U(1) gauge potential. By, means of Seiberg-Witten mapping, we construct a mapping of unit vector field between noncommutative space and ordinary space, and find the noncommutative U(1) gauge potential and its gauge field tensor can be expressed in terms of the unit vector field. When the unit vector field has no singularity point, noncommutative gauge potential and gauge field tensor will equal ordinary gauge potential and gauge field tensor

LAS对菲在土壤(柱)中的迁移影响

The migration of phenanthrene and factors affecting its migration in soil in presence of LAS are studied through the simulation of soil column. Results show that:① Through 180 days of leaching, when the LAS concentration is 0.5 or 5mg·L *.1, the phenanthrene residual rate is less than 10 percent and the residue distributes mainly in surface soil(0-5cm);② When LAS concentration is 0.5mg·L *.1, the phenanthrene residual rate in soil is 3-8 times that of LAS concentration being 5mg·L *.1;③ The phenanthrene residual rate in soil is 2.5-6 times that of soil that with organic matter removed.It's shown that the LAS concentration has obvious effect for the phenanthrene residual rate in soil and the organic matter in soil has good cap ability in keeping phenanthrene.

基于传统生态足迹方法和能值生态足迹方法的黑龙江省可持续发展状态比较

运用传统生态足迹方法及其改进方法——能值生态足迹方法,对2005年黑龙江省可持续发展状态进行了分析.结果表明:2005年,采用能值生态足迹方法和传统生态足迹方法计算的黑龙江省生态赤字分别为1.919和0.6256hm2.cap-1.2种方法得到的研究区生态足迹均超过生态承载力,表明该区域经济社会发展处于一种不可持续的发展状态.能值生态足迹方法从能量角度探讨了人类物质需求与生态系统资源供应的关系,并采用能值转换率、能值密度等更加稳定的参数进行计算,一定程度上克服了传统生态足迹方法的缺陷.

Climate change, sea level rise and integrated coastal zone management: An IPCC approach

Expansion of economic activities, urbanisation, increased resource use and population growth are continuously increasing the vulnerability of the coastal zone. This vulnerability is now further raised by the threat of climate change and accelerated sea level rise. The potentially severe impacts force policy-makers to also consider long-term planning for climate change and sea level rise. For reasons of efficiency and effectiveness this long-term planning should be integrated with existing short-term plans, thus creating an Integrated Coastal Zone Management programme. As a starting point for coastal zone management, the assessment of a country's or region's vulnerability to accelerated sea level rise is of utmost importance. The Intergovernmental Panel on Climate Change has developed a common methodology for this purpose. Studies carried out according to this Common Methodology have been compared and combined, from which general conclusions on local, regional and global vulnerability have been drawn, the latter in the form of a Global Vulnerability Assessment. In order to address the challenge of coping with climate change and accelerated sea level rise, it is essential to foresee the possible impacts, and to take precautionary action. Because of the long lead times needed for creating the required technical and institutional infrastructures, such action should be taken in the short term. Furthermore, it should be part of a broader coastal zone management and planning context. This will require a holistic view, shared by the different institutional levels that exist, along which different needs and interests should be balanced.

Genomic organization, nucleotide sequence analysis of the core histone genes cluster in Chlamys farreri and molecular evolution assessment of the H2A and H2B

This work represents the nucleotide sequence of the core histone gene cluster from scallop Chlamys farreri. The tandemly repeated unit of 5671 bp containing a copy of the four core histone genes H4, H2B, H2A and H3 was amplified and identified by the techniques of homology cloning and genomic DNA walking. All the histone genes in the cluster had the structures in their 3' flanking region which related to the evolution of histone gene expression patterns throughout the cell cycle, including two different termination signals, the hairpin structure and at least one AATAAA polyadenylation signal. In their 5' region, the transcription initiation sites with a conserved sequence of 5'-PyATTCPu-3' known as the CAP site were present in all genes except to H2B, generally 37-45 bp upstream of the start code. Canonical TATA and CAAT boxes were identified only in certain histone genes. In the case of the promoters of H2B and H2A genes, there was a 5'-GATCC-3' element, which had been found to be essential to start transcription at the appropriate site. After this element, in the promoter of H2B, there was another sequence, 5'-GGATCGAAACGTTC-3', which was similar to the consensus sequence of 5'-GGAATAAACGTATTC-3' corresponding to the H2B-specific promoter element. The presence of enhancer sequences (5'-TGATATATG-3') was identified from the H4 and H3 genes, matching perfectly with the consensus sequence defined for histone genes. There were several slightly more complex repetitive DNA in the intergene regions. The presence of the series of conserved sequences and reiterated sequences was consistent with the view that mollusc histone gene cluster arose by duplicating of an ancestral precursor histone gene, the birth-and-death evolution model with strong purifying selection enabled the histone cluster less variation and more conserved function. Meanwhile, the H2A and the H2B were demonstrated to be potential good marks for phylogenetic analysis. All the results will be contributed to the characterization of repeating histone gene families in molluscs.

拓扑异构酶的结构、功能与进化的结构生物信息学研究

拓扑异构酶（topoisomerase）是一类控制和修改双螺旋DNA复制和转录过程中的拓扑结构的酶，是生命活动中最重要的酶。以IA类和II类拓扑异构酶中共存的toprim以及CAP-like结构域为研究对象，对拓扑异构酶中的三大类酶的分子进化情况进行了分析。结果显示在IA类和II类酶之间序列保守性很低，但是具有两个保守的结构域，在IIB类拓扑异构酶中toprim结构域中存在着和其他toprim结构域相同的四个保守位点，而在CAP-like结构域中IA类和II类中存在较大差异，没有明显的序列保守性，IIB类和IIA类的CAP-like结构域在二级结构上非常相似。从toprim结构域系统进化研究中我们发现IIA类和皿类中toprim结构域的进化关系很近，两类酶的toprim结构域在亲缘关系上和primase较远，而以上三者和IA类的进化关系最远。CAP-like结构域的系统进化研究发现IIA类以及IA类的domain4的CAP-like结构域进化关系比较近，IIB类和他们之间关系稍微远一些，IA类的domain3和以上几个结构域的关系较远，这也与他们的二级结构上的一致性是相同的。通过分析，IIA、IIB类起源于类似IA类的古老的拓扑异构酶，'在IA类进化中经过基因复制产生了两个不同的CAP-like结构域。然后祖先拓扑异构酶发生了变化，N'端加入了ATPase结构域和DNAgyrase/Mutlsecond结构域，形成了严格依赖ATP供能的真核生物IIA类，在细菌中断开成为两个亚基的细菌中IIA类。IIB类是祖先细胞的IIA类的一个或者是两个亚单位在古细菌以及真核生物中通过复制、重组和缺失造成的，IIB类中的toprim结构域很接近IIA类，可以认为，llB类中的toPrim结构域直接由IIA类转移而来，而IIB类中的cAP一1汰e结构域较IIA类中产生更早一些，应该是由拓扑异构酶祖先中产生的二级结构为aβaaββ的CAP-like结构域直接进化而来。然而，两个结构域的基因在连接到一起时候发生了不同于一般顺序的拼接，于是nB类中两个结构域形成了不同于现在的IA类和IIA类的顺序。

Synthesis, crystal structure, and magnetic properties of {[Cu(oxbe)]Mn(H2O)[Cu(oxbe)(DMF)]}(n)center dot nDMF center dot nH(2)O: From dissymmetrical mononuclear entities to a 3D heterometallic supramolecular coordination polymer

Self-assembly of the building block [Cu(oxbe)](-) with Mn(II) led to a novel coordination polymer {[Cu(oxbe)]Mn(H2O)(Cu(oxbe)(DMF)]}(n).nDMF.nH(2)O, where H(3)oxbe is a new dissymmetrical ligand N-benzoato-N'-(2-aminoethyl)-oxamido and DMF = dimethylformamide. The crystal forms in the triclinic system, space group P(1)over-bar, with a = 9.260(4) angstorm, b = 12.833(5) angstrom, c = 15.274(6) angstrom , alpha = 76.18(3)degrees, beta = 82.7(3)degrees, gamma = 82.31(3)degrees, and Z = 2. The crystal structure of the title complex reveals that the two-dimensional bimetallic layers are constructed of (CuMnII)-Mn-II-Cu-II chains linked together by carboxylate bridge and hydrogen bonds help to produce a novel three-dimensional channel-like structure. The magnetic susceptibility measurements (5-300 K) were analyzed by means of the Hamiltonian (H)over-cap = -2J(S)over-cap (Mn)((S)over-cap(Cu1) + (S)over-cap(Cu2)), leading to J = -17.4 cm(-1).

Active components and mechanism of isobutane alkylation with butenes in the catalytic system of HPAs plus AcOH

The catalytic active phase (CAP) of a novel liquid catalyst for isobutane alkylation with butenes was investigated, the composition of the CAP was analysized, The components of the catalytic active phase were separated and examined by the methods of FTIR, UV and NMR etc., On the basis of these results, a reaction mechanism based on the formation of protonated heteropolyacid as an intial stage in the isobutane alkylation with butenes was postulated, which is in agreement with the experimental results.

Topographic changes in nascent and early mesoderm in amphioxus embryos studied by Dil labeling and by in situ hybridization for a Brachyury gene

In amphioxus embryos, the nascent and early mesoderm (including chorda-mesoderm) was visualized by expression of a Brachyury gene (AmBra-2). A band of mesoderm is first detected encircling the earliest (vegetal plate stage) gastrula sub-equatorially. Soon thereafter, the vegetal plate invaginates. resulting in a cap-shaped gastrula with the mesoderm localized at the blastoporal lip and completely encircling the blastopore. As the gastrula stage progresses, DiI (a vital dye) labeling demonstrates that the entire mesoderm is internalized by a slight involution of the epiblast into the hypoblast all around the perimeter of the blastopore. Subsequently. during the early neurula stage, the internalized mesoderm undergoes anterior extension mid-dorsally (as notochord) and dorsolaterally (in paraxial regions when segments will later form). By the late neurula stage, AmBra-2 is no longer transcribed throughout the mesoderm as a whole; instead. expression is detectable only in the posterior mesoderm and in the notochord, but not in par axial mesoderm where definitive somites have formed.

Effective properties of graded elliptical cylindrical composites

The effective property has been investigated theoretically in graded elliptical cylindrical composite's consisting of inhomogeneous graded elliptical cylinders and an isotropic matrix under external uniform electric field. As a theoretical model, the dielectric gradient profile in the elliptical cylinder is modeled by a power-law function of short semi-axis variable parameter (xi(2) - 1) in the elliptical cylindrical coordinates, namely epsilon(i)(xi) = c(k) (xi(2) - 1)(k), where c(k) and k are the parameters, and xi is the long semi-axis space variable in an elliptical cylindrical inclusion region. In the dilute limit, the local analytical potentials in inclusion and matrix regions are derived exactly by means of the hyper-geometric function, and the formulas are given for estimating the effective dielectric responses under the external lfield along (x) over cap- and (y) over cap -directions, respectively. Furthermore, we have demonstrated that our effective response formulas can be reduced to the well-known results of homogeneous isotropic elliptical cylindrical composites if we take the limit k -> 0 in graded elliptical cylindrical composites. (c) 2006 Elsevier B.V. All rights reserved.

渤海湾盆地济阳坳陷东部走滑构造特征及其对油气成藏的影响研究

研究区位于郯庐断裂中段与济阳坳陷的构造结合部，区内走滑构造广泛发育，主要的走滑断裂有7条，分别是郯庐断裂带的东西两支、垦东断层、孤东断层、长堤断层、埕东断层和发育于垦东凸起中部的浅层走滑构造带。走滑构造带与油气富集带有着明显的对应关系。 通过对研究区内二维、三维地震测线和平面构造图的精细解释和分析，分别揭示了各走滑断裂在平面、剖面和三维空间上的构造形态。根据走滑断裂及其伴生构造的平面和剖面上的几何学特征，将研究区内的走滑断裂划分为三种类型：成熟型走滑断裂、隐伏型走滑断裂、不连续型的走滑断裂。 从理论模式研究入手，推导了拉分盆地中盆地的走滑速率与沉降速率之间的关系，证实了走滑速率同盆地的几何形状参数、最大沉降深度和盆地的沉降速率存在着稳定的数值关系。通过对莱州湾地区潍北凹陷基底沉降历史的分析，建立了潍北凹陷沉降速率与郯庐断裂中段走滑速率之间的经验关系式，进而求出郯庐断裂中段新生代右行走滑位移量的大小为40km。 运用2DMove软件，对研究区内四条典型剖面进行构造复原，计算出了各条剖面每个时期的伸展参数，对研究区构造活动强度进行了定量分析，揭示了研究区的构造演化规律。通过运用Ansys软件进行有限元模拟，恢复了晚白垩世晚期-古近纪早期研究区内的构造应力场和应变场，揭示了扭张作用是研究区内走滑断层开始走滑的主要原因。 通过上述分析，结合对究区内近几年勘探开发成功和失败的实例分析，全面探讨了走滑活动对于油气成藏“生”、“储”、“盖”、“圈”、“运”、“保”各因素的影响。

栉孔扇贝核心组蛋白的基因结构及H2A抗菌活性的研究

栉孔扇贝是我国传统的海水养殖品种，但自1997 年以来，养殖扇贝陆续爆发的大规模死亡，不但造成了巨大的经济损失，而且严重影响了该产业的健康发展。目前，虽然针对扇贝养殖环境、病原以及养殖技术等方面开展了大量的研究工作，提出了许多防病治病的措施，并取得了一定的成效。但由于引起养殖扇贝病害的病原和发病原因的多样性，大量使用抗菌素和农药后造成病原微生物抗药性的提高以及对环境造成的严重破坏，贝类养殖业要摆脱病害的困扰，必须开辟新的疾病防治途径。 从扇贝自身的免疫防御因子入手，筛选和克隆参与免疫防御的功能基因，尤其是一些新颖的具有抗菌活性的分子，对于深入探讨扇贝的免疫防御机制，指导扇贝的遗传改良和抗病品系的培育具有重要的意义；另一方面，可对抗菌效应物实现重组表达，开发新型的病害预防治疗制剂，取代目前普遍使用的抗生素和化学药物。抗菌效应物是机体在免疫应答过程中产生的多肽类物质，对侵入生物体内的细菌、病毒具有很强的免疫杀灭作用，对抗菌效应物的研究有助于深入了解机体先天性免疫防御的机制。 本研究在同源克隆策略的基础上，从利用构建的Genome Walking 文库中克隆到了栉孔扇贝核心组蛋白群的全长序列，该串联重复序列全长5671bp，包括各一个拷贝的组蛋白H4, H2B, H2A 和 H3。所有的核心组蛋白在3’侧翼序列均具有与其在细胞周期进化模式相关的特征结构，即两个不同的终止信号：发卡结构和至少一个多聚腺苷酸信号序列（AATAAA）。在5’区域的起始密码子上游37–45 bp处的保守的CAP位点（5’-PyCATTCPu-3’）存在于除H2B外的每一个基因中；规则的TATA 和CAAT元件也在核心组蛋白群中的个别的基因中找到。在H2B 和H2A基因的启动子区域，对于定位转录起始位点非常重要的元件（5’-GATCC-3’）也相对保守； 在H2B启动子区域存在着与其特征序列（5’-GGAATAAACGTATTC-3’）相似性很高的序列结构5’-GGATCGAAACGTTC-3’。增强子序列只发现存在于H4 和 H3基因中，其序列结构与组蛋白增强子序列(5’-TGATATATG-3’)基本匹配。在组蛋白基因群中存在着一些保守的序列和重复结构表明组蛋白基因的进化是采取“生与死的进化模 式”并伴随着强的纯化选择压力，使得该基因群变异较少以保持其基本功能。同时，利用18S rRNA做参照，探讨了H2A 和H2B作为分子系统进化分析的潜在分子标记，表明组蛋白H2A 和H2B可以作为分子系统进化分析得候选分子，它们在区分近缘种的分辨率上表现出了更高的灵敏度。该研究结果为进一步定性软体动物组蛋白重复单位提供了基础。 在脊椎动物中，组蛋白H2A通过特异性剪切其N末端产生新颖的抗菌肽的形式来参与宿主的免疫应答反应，在软体动物中是否存在同样的机制还未有研究报道。本研究利用上述克隆的H2A基因研究了其在病原胁迫下的表达变化规律并对其N末端39aa进行了重组表达和抗菌活性分析，以期为开发和利用软体动物的新颖的抗菌肽提供理论依据。半定量RT-PCR发现血细胞中H2A 的mRNA 在微生物感染前后的表达量没有任何显著的变化，表明H2A本身并不直接参与对病原的清除过程或者说病原微生物并不能诱导H2A的表达。因此，我们推测该基因可能象脊椎动物一样以前体形式存在，经剪切后参与宿主的免疫应答过程，为此我们研究了H2A的N末端的抗菌活性。通过将与脊椎动物buforin I同源的H2A的N末端39aa克隆到毕赤酵母表达载体pPIC9K实现了该基因N末端的重组表达。抑菌实验表明，重组产物具有广谱的抗菌活性，其对供试的革兰氏阳性菌藤黄微球菌表现出显著的抗菌活性，而对革兰氏阴性菌（鳗弧菌、亮弧菌）的抑菌活性则相对较弱；此外，重组产物对毕赤酵母GS115也表现出一定的杀菌活性，证明其具有抗真菌活性。上述研究结果证明组蛋白H2A的N末端是一种潜在的抗菌肽，但该抗菌肽是否参与机体的免疫应答过程需要进一步的深入研究。

长江口水文、泥沙过程与圆桩冲刷的数值模拟

本文主要利用ECOMSED模式对长江口及邻近海域的水文、泥沙过程进行三维数值模拟，并结合实测资料分析其水动力、泥沙输运、底床冲淤等特征；然后利用欧拉二相流模型模拟小尺度条件下长江口底床上圆桩周围的水流和泥沙冲刷、输运规律。 通过资料分析和ECOMSED数值模拟结果比较，我们得出：长江口口门内为非正规半日潮流区，潮流运动形式多为往复流，落潮流占优。落潮流速大于涨潮流速，流速垂向分布从表层到底层递减。悬沙浓度与流速关系密切，一般来说，流速越大，悬沙浓度越高；一个潮周期过程中会出现两次、三次或四次泥沙再悬浮，分别是涨急、落急、涨转落、落转涨时刻；盐水楔结构对粘性与非粘性悬沙浓度的分布起决定性作用，转流时泥沙再悬浮主要是由于这时会出现盐水楔，并形成垂向环流，使床面大量未被固结的泥沙再悬浮，形成峰值。悬浮泥沙垂向分布可分为垂线型，斜线型，抛物线型和L型。流场和底床冲淤变化与水深关系密切：深水区，流速较大，底床冲淤变化也较大。其中，受径流影响区表现为淤积，受潮流影响区表现为冲刷；浅水区基本表现为淤积。 从模式运行结果和实测资料比较可以看出，该模型可以较好的模拟长江口水流、悬浮泥沙分布与变化；能够再现在径流入海口处，盐水楔结构及其诱生的垂向环流从形成到发展，又到消失的完整过程；也能够展示底床的冲淤变化。对于我们模拟长江口背景流场，了解该区域内水动力变化、悬浮泥沙输运、底床冲淤等有重要意义。 在欧拉二相流模型对长江口底床上圆桩周围的水流和局部冲刷数值模拟过程中，我们不仅考虑水流和泥沙之间的作用，还引入泥沙颗粒之间的相互影响。模拟结果较合理的展示了圆桩周围的流场类型和底床冲刷变化：在圆桩前方，流速减小并形成垂向涡旋，从而产生局部冲刷；在圆桩两侧，水流加速，挟带上游泥沙向下输送，并在内侧堆积；而在圆桩后面，存在流速分离区。在该分离区内流速很小，并且当流速较大时，会产生回流，形成两个对称的漩涡。流速越大，圆桩前由垂向涡旋引起的局部冲刷就越明显；而当底床泥沙粒径变小时，泥沙临界起动流速变小，底床也更容易被冲刷。悬浮泥沙浓度分布受流场的影响，并且当粒径小而流速大时，能悬浮到更高的深度。

Study on steel corrosion in different seabed sediments

A series of simulation experiments on carbon steel (A(3) steel) and low alloy steel (16 Mn steel) in marine atmosphere (MA), seawater (SW) and seabed sediment (SBS) including rough sea sand, fine sea sand and seabed mud were carried out indoors for a year or so by means of individually hanging plates (IHP) and electrically connected hanging plates (ECHP). The corrosion of steels in SBS was mainly due to the macrogalvanic cell effect. The steel plates at the bottom of SBS, as the anode of a macrogalvanic cell, showed the heaviest corrosion with a corrosion rate of up to 0.12 mm/a, approximately equal to that of steel plates in marine atmosphere. The test results showed that the corrosion rates of A(3) and 16 Mn steel in marine environment were in the order: MA > SW > SBS by the IHP method; and MA > SBS > SW by the ECHP method. The corrosion rates of steels in the water/sediment interface were directly proportional to the grain size of the SBS by the ECHP method, but those of steels in the water/sediment interface did not vary with the grain size of SBS by the IHP method. The corrosion rate of low-alloy steel was a little higher than that of carbon steel. The results of this study have important applications for design of offshore steel structures such as oil platform, pier, and port.