Porting and performance analysis of EC-Earth System on the BSC-MareNostrum Supercomputer

Earth System Models (ESM) have been successfuly developed over past few years, and are currently beeing used for simulating present day-climate, seasonal to interanual predictions of climate change. The supercomputer performance plays an important role in climate modeling since one of the challenging issues for climate modellers is to efficiently and accurately couple earth System components on present day computers architectures. At the Barcelona Supercomputing Center (BSC), we work with the EC- Earth System Model. The EC- Earth is an ESM, which currently consists of an atmosphere (IFS) and an ocean (NEMO) model that communicate with each other through the OASIS coupler. Additional modules (e.g. for chemistry and vegetation ) are under development. The EC-Earth ESM has been ported successfully over diferent high performance computin platforms (e.g, IBM P6 AIX, CRAY XT-5, Intelbased Linux Clusters, SGI Altix) at diferent sites in Europ (e.g., KNMI, ICHEC, ECMWF). The objective of the first phase of the project was to identify and document the issues related with the portability and performance of EC-Earth on the MareNostrum supercomputer, a System based on IBM PowerPC 970MP processors and run under a Linux Suse Distribution. EC-Earth was successfully ported to MareNostrum, and a compilation incompatibilty was solved by a two step compilation approach using XLF version 10.1 and 12.1 compilers. In addition, the EC-Earth performance was analyzed with respect to escalability and trace analysis with the Paravear software. This analysis showed that EC-Earth with a larger number of IFS CPUs (<128) is not feasible at the moment since some issues exists with the IFS-NEMO balance and MPI Communications.

Size-dependent predation by Dugesia lugubris (Turbellaria) on Physa acuta (Gastropoda): experiments and model

1. We investigated experimentally predation by the flatworm Dugesia lugubris on the snail Physa acuta in relation to predator body length and to prey morphology [shell length (SL) and aperture width (AW)]. 2. SL and AW correlate strongly in the field, but display significant and independent variance among populations. In the laboratory, predation by Dugesia resulted in large and significant selection differentials on both SL and AW. Analysis of partial effects suggests that selection on AW was indirect, and mediated through its strong correlation with SL. 3. The probability P(ij) for a snail of size category i (SL) to be preyed upon by a flatworm of size category j was fitted with a Poisson-probability distribution, the mean of which increased linearly with predator size (i). Despite the low number of parameters, the fit was excellent (r2 = 0.96). We offer brief biological interpretations of this relationship with reference to optimal foraging theory. 4. The largest size class of Dugesia (>2 cm) did not prey on snails larger than 7 mm shell length. This size threshold might offer Physa a refuge against flatworm predation and thereby allow coexistence in the field. 5. Our results are further discussed with respect to previous field and laboratory observations on P acuta life-history patterns, in particular its phenotypic variance in adult body size.

Archaeospicularia, new radiolarian order; a new step for the classification of the Lower Paleozoic Radiolaria.

A new radiolarian order - Archaeospicularia - is proposed for some Lower Paleozoic radiolarians previously considered to belong to Spumellaria and to Collodaria. It is characterized by a globular shell made of several spicules which can be free, interlocked, or fused to formed a latticed wall. The present paper gives the definition of this order and proposes a first classification. It is supposed that the Archaeospicularia represents the oldest radiolarian group and that in the Lower Paleozoic it gave rise to the orders Entactinaria, Albaillellaria, and probably Spumellaria by the reduction of the number of initial spicules. The origin of this order and its relationships with other groups of organisms with siliceous skeletons are also briefly discussed. (C) 2000 Academie des sciences / Editions scientifiques et medicales Elsevier SAS.

Family Kungalariidae, n. fam., new Mesozoic entactinarian Radiolaria with a nassellarian-type initial spicule

Based on internal structure, a new family of entactinarian radiolarians, the Kungalariidae, is described with three new genera and four species: Kungalaria newcombi, Cachecreekaria californiensis, Transylvanaria devaensis, and T. hattorii. Members of this family have an eccentric internal, nassellarian-type initial spicule with bar MB, rays A, V, L, I, and spine Ax; a medullary shell built above the plane of lateral rays as in the cephalis of many nassellarians; and a spherical to subspherical cortical shell around the medullary shell. This new family is part of a group of Triassic entactinarians structurally intermediate between Entactinaria, or spicule-bearing Spumellaria, and Nassellaria. The new genera and species described occur in the Rhaetian of Queen Charlotte Islands, British Columbia, Aalenian to early-mid Bajocian of central Japan, Cenomanian of California, and Coniacian of Romania.

Registro, centralización y análisis de eventos en un entorno corporativo multiplataforma

Trabajo final de carrera sobre el uso del software libre para la construcción de un sistema para el registro, centralización y análisis de eventos en un entorno corporativo multiplataforma.

Cognitive stimulation through task-oriented telerobotics

The project presented, iCognos, consists of a flexible platform to assist end-users in performing a series of mental tasks with a sensitized mobile telerobotic platform aimed at mitigating the problems associated to cognitive disorders with an ecological cognition approach.

PEG-b-PPS diblock copolymer aggregates for hydrophobic drug solubilization and release: cyclosporin A as an example

Micelles formed from amphiphilic block copolymers have been explored in recent years as carriers for hydrophobic drugs. In an aqueous environment, the hydrophobic blocks form the core of the micelle, which can host lipophilic drugs, while the hydrophilic blocks form the corona or outer shell and stabilize the interface between the hydrophobic core and the external medium. In the present work, mesophase behavior and drug encapsulation were explored in the AB block copolymeric amphiphile composed of poly(ethylene glycol) (PEG) as a hydrophile and poly(propylene sulfide) PPS as a hydrophobe, using the immunosuppressive drug cyclosporin A (CsA) as an example of a highly hydrophobic drug. Block copolymers with a degree of polymerization of 44 on the PEG and of 10, 20 and 40 on the PPS respectively (abbreviated as PEG44-b-PPS10, PEG44-b-PPS20, PEG44-b-PPS40) were synthesized and characterized. Drug-loaded polymeric micelles were obtained by the cosolvent displacement method as well as the remarkably simple method of dispersing the warm polymer melt, with drug dissolved therein, in warm water. Effective drug solubility up to 2 mg/mL in aqueous media was facilitated by the PEG- b-PPS micelles, with loading levels up to 19% w/w being achieved. Release was burst-free and sustained over periods of 9-12 days. These micelles demonstrate interesting solubilization characteristics, due to the low glass transition temperature, highly hydrophobic nature, and good solvent properties of the PPS block

Combates Pela História

Este livro é composto por artigos e ensaios. Os artigos, alinhados na primeira parte, aparecem sob o signo de "Pensar com a História", ao passo que os ensaios constam na segunda sob rubrica de "Pensar a História". Por sumária, esta arrumação-classificação requer uma explicação mais desdobrada. De dimensão variável, os artigos são intervenções cívicas, assumidamente marcadas por preocupação do presente. Preocupações que não hesitaria em qualificar de militantes, se não pesasse sobre esta palavra um viés de sentido provocado pela vossa vivência excessivamente partidarizada. Neles – dizia – a História figura menos como objecto de estudo do que como instrumento com o qual se trata a compreensão das estruturas da sociedade presente. Compreensão esta que potencia impulsos de intervenção social de natureza eminentemente crítica. Este último aspecto é crucial. Afinal de contas, o que define o papel do intelectual nas sociedades modernas não será justamente a utilização do conhecimento e da criação para fins de intervenção crítica?

A species delimitation approach in the Trochulus sericeus/hispidus complex reveals two cryptic species within a sharp contact zone.

BACKGROUND: Mitochondrial DNA sequencing increasingly results in the recognition of genetically divergent, but morphologically cryptic lineages. Species delimitation approaches that rely on multiple lines of evidence in areas of co-occurrence are particularly powerful to infer their specific status. We investigated the species boundaries of two cryptic lineages of the land snail genus Trochulus in a contact zone, using mitochondrial and nuclear DNA marker as well as shell morphometrics. RESULTS: Both mitochondrial lineages have a distinct geographical distribution with a small zone of co-occurrence. In the same area, we detected two nuclear genotype clusters, each being highly significantly associated to one mitochondrial lineage. This association however had exceptions: a small number of individuals in the contact zone showed intermediate genotypes (4%) or cytonuclear disequilibrium (12%). Both mitochondrial lineage and nuclear cluster were statistically significant predictors for the shell shape indicating morphological divergence. Nevertheless, the lineage morphospaces largely overlapped (low posterior classification success rate of 69% and 78%, respectively): the two lineages are truly cryptic. CONCLUSION: The integrative approach using multiple lines of evidence supported the hypothesis that the investigated Trochulus lineages are reproductively isolated species. In the small contact area, however, the lineages hybridise to a limited extent. This detection of a hybrid zone adds an instance to the rare reported cases of hybridisation in land snails.

Sistema operatiu ThinClient

Creació d'una plataforma thin client per a una empresa.

Melanin-based colouration predicts aggressiveness and boldness in captive eastern Hermann's tortoises

Although body colouration is often used in social interactions, few studies have tested whether colouration is linked to a suite of behavioural traits. In the present study, we examined whether among captive adult male Eastern Hermann's tortoises (Eurotestudo boettgeri) behavioural patterns covary with eumelanic colouration of the shell. Dark eumelanic males were more aggressive in male-male confrontations and bolder towards humans. These relationships were independent of body size and ambient temperature. Activity level and exploration were not significantly associated with colouration. We conclude that at least in captivity shell colouration predicts agonistic behaviour towards conspecifics and fearfulness towards human (i.e. boldness).

Implantació de la telefonia IP en un entorn empresarial

L’objectiu d’aquest treball és dissenyar un model general d’un sistema de telefonia IP per a una petita o mitjana empresa. El model ha de tenir en compteles característiques actuals de la xarxa de l’empresa i proposar una solució adient. Un altre requeriment és la utilització de software de lliure distribució, des del sistema operatiu fins al relatiu a VoIP, i més concretament, el software de centraleta VoIP Asterisk sobre GNU/Linux.En primer lloc s’estudiaran els conceptes bàsics de la telefonia IP (protocols,codificadors, servidors, etc.). En segon lloc, s’analitzaran els diferents escenarispossibles i es proposaran solucions adequades per cadascun d’ells. Després s’estudiarà el funcionament de les centraletes Asterisk i la seva configuració encada escenari. Finalment s’aplicarà aquest estudi a una empresa concreta

Large-scale evolutionary trends of Acrochordiceratidae Arthaber, 1911 (Ammonoidea, Middle Triassic) and Cope's rule

Directed evolution of life through millions of years, such as increasing adult body size, is one of the most intriguing patterns displayed by fossil lineages. Processes and causes of such evolutionary trends are still poorly understood. Ammonoids (externally shelled marine cephalopods) are well known to have experienced repetitive morphological evolutionary trends of their adult size, shell geometry and ornamentation. This study analyses the evolutionary trends of the family Acrochordiceratidae Arthaber, 1911 from the Early to Middle Triassic (251228 Ma). Exceptionally large and bed-rock-controlled collections of this ammonoid family were obtained from strata of Anisian age (Middle Triassic) in north-west Nevada and north-east British Columbia. They enable quantitative and statistical analyses of its morphological evolutionary trends. This study demonstrates that the monophyletic clade Acrochordiceratidae underwent the classical evolute to involute evolutionary trend (i.e. increasing coiling of the shell), an increase in its shell adult size (conch diameter) and an increase in the indentation of its shell suture shape. These evolutionary trends are statistically robust and seem more or less gradual. Furthermore, they are nonrandom with the sustained shift in the mean, the minimum and the maximum of studied shell characters. These results can be classically interpreted as being constrained by the persistence and common selection pressure on this mostly anagenetic lineage characterized by relatively moderate evolutionary rates. Increasing involution of ammonites is traditionally interpreted by increasing adaptation mostly in terms of improved hydrodynamics. However, this trend in ammonoid geometry can also be explained as a case of Copes rule (increasing adult body size) instead of functional explanation of coiling, because both shell diameter and shell involution are two possible paths for ammonoids to accommodate size increase.

On the immature stages and natural history of Gonioterma exquisita Duckworth (Lepidoptera, Elachistidae, Stenomatinae)

In the present work the natural history and immature stages of Gonioterma exquisita Duckworth, 1964 of the Brazilian cerrado region are described. The caterpillars are external folivorous feeders and present a diet restricted to pubescent-leaved host plants of the genus Byrsonima Rich. (Malpighiaceae). They are solitary caterpillars and they build a hard individual shelter that looks like a planorbid shell, made from silk and frass, covered with trichomes and silk, where they develop until the last larval instar on the host plant, and remain inside it until the adult emergence on herbaceous stratum. The larval development presented eight instars. Egg, larval head capsules, instar duration, pupa, shelter, and behavior are also described. Diapause is mentioned for the first time in this species.

Sistema de controlo e reservas de salas da Universidade do Mindelo

Este trabalho tem como objetivo apresentar um projeto para o desenvolvimento de um sistema de informação web, visando automatizar o processo de controlo de reservas de salas da Universidade do Mindelo. O acesso ao sistema será feito através do site da Universidade onde os utilizadores poderão cadastrar, controlar, reservar e consultar o uso das salas da Universidade. Além disso, através do uso de padrões de projetos e de conceitos da engenharia e arquitetura de software, este trabalho tem por objetivo a construção do sistema através da tecnologia PHP – Personal Home Page e Javascript. As tecnologias utilizadas para o desenvolvimento do sistema são gratuitas, tais como, servidor web Apache, base de dados MySQL, Microsoft Office Visio, DBDesigner, Toad for MySQL, sendo portáveis para qualquer sistema operativo, como: Linux, Windows, entre outros.