PCR-based assay for detection of four coral pathogens

Several microorganisms have been identified as pathogenic agents responsible for various outbreaks of coral disease. Little has been learned about the exclusivity of a pathogen to given disease signs. Most pathogens have only been implicated within a subset of corals, leaving gaps in our knowledge of the host range and geographic extent of a given pathogen. PCR-based assays provide a rapid and inexpensive route for detection of pathogens. Pathogen-specific 16S rDNA primer sets were designed to target four identified coral pathogens: Aurantimonas coralicida, Serratia marcescens, Vibrio shilonii, and Vibrio coralliilyticus. Assays detected the presence of targets at concentrations of less than one cell per microliter. The assay was applied to 142 coral samples from the Florida Keys, Puerto Rico, and U.S. Virgin Islands as an in situ specificity test. Assays displayed a high-level of specificity, seemingly limited only by the resolution of the 16S rDNA.

Coral reef activity book

An activity book for children highlighting coral reef issues. The book includes coral reef information, fun facts, drawings to color, connect the dots, find a word, images, matching, etc. Target audience is K-6th graders.

Status of coral reef ecosystems in a marine managed area in St. Croix, USVI [poster]

This poster presents information on the status and trends of coral reef ecosystems in St. Croix, US Virgin Islands (USVI). Data were collected by NOAA’s Center for Coastal Monitoring and Assessment Biogeography Branch (CCMA-BB) from 2001-2006 at 1,275 random locations in and around Buck Island Reef National Monument (BIRNM). The main objective was to quantify changes in fish species and assemblage diversity, abundance, biomass and size structure; to provide spatially explicit information on the distribution of key species or groups of species; and to compare community structure inside versus outside of BIRNM.

Mesophotic coral ecosystems research strategy: international workshop to prioritize research and management needs for mesophotic coral ecosystems, Jupiter, Florida, 12-15 July 2008

On July 12-15, 2008, researchers and resource managers met in Jupiter, Florida to discuss and review the state of knowledge regarding mesophotic coral ecosystems, develop a working definition for these ecosystems, identify critical resource management information needs, and develop a Mesophotic Coral Ecosystems Research Strategy to assist the U.S. National Oceanic and Atmospheric Administration (NOAA) and other agencies and institutions in their research prioritization and strategic planning for mesophotic coral ecosystems. Workshop participants included representatives from international, Federal, and state governments; academia; and nongovernmental organizations. The Mesophotic Coral Ecosystems Workshop was hosted by the Perry Institute for Marine Science (PIMS) and organized by NOAA and the U.S. Geological Survey (USGS). The workshop goals, objectives, schedule, and products were governed by a Steering Committee consisting of members from NOAA (National Centers for Coastal Ocean Science’s Center for Sponsored Coastal Ocean Research, the Office of Ocean Exploration and Research’s NOAA Undersea Research Program, and the National Marine Fisheries Service), USGS, PIMS, the Caribbean Coral Reef Institute, and the Bishop Museum.

Resiliencia en crestas de arrecifes coralinos del este del golfo de Batabanó, Cuba, y factores determinantes probables

RESUMEN Se comparó el grado de resiliencia de seis crestas arrecifales del este del golfo de Batabanó, Cuba. Tres fueron del norte del golfo de Cazones (Tramo Norte) y las restantes, del oeste de Cayo Largo (Tramo Sur). Las del primer tramo fueron las de faro Cazones, Norte de la cresta de cayo Diego Pérez y de faro Diego Pérez. Las otras tres fueron las de cayo Rico, arrecifes Los Ballenatos y arrecifes Hijos de Los Ballenatos. Se emplearon los indicadores biológicos del Protocolo AGRRA. El Tramo Norte presentó las crestas más resilientes, sobre todo la de faro Cazones. Las del Tramo Sur no exhibieron resiliencia. Fueron varios e interrelacionados, los factores aparentemente más determinantes en la resiliencia. Entre estos, cuatro se consideraron como fuerzas motrices: resguardo contra el oleaje, circulación habitual giratoria ciclónica en la ensenada de Cazones, entrada de nutrientes provenientes tanto de la ciénaga de Zapata como de aguas profundas, y abundancia del erizo herbívoro Diadema antillarum. Los demás factores, desencadenados por los anteriores y también interrelacionados, fueron, al parecer la menor afectación por oleaje y sedimentos, estabilización de fragmentos vivos de coral, índices favorables de macroalgas bentónicas, cierta retención de nutrientes y plancton, más alimentación heterotrófica de los corales, mayor auto reclutamiento de corales y del erizo Diadema; mejores condiciones para el asentamiento y viabilidad de los reclutas, y para el recapamiento de corales; mayor crecimiento y recuperación de los corales y mejores condiciones térmicas contra el blanqueamiento de corales ABSTRACT The degree of resilience of six reef crest sites was compared at the east of the Gulf of Batabano, Cuba. Three of them were located north of the Gulf of Cazones (Northern Stretch), while the remaining ones were west of Cayo Largo (Southern Stretch). Those of the Northern Stretch were “Faro Cazones”, north of the crest of cayo Diego Pérez and “Faro Diego Pérez”. The remaining sites were those of the cayo Rico, Los Ballenatos reefs, and Hijos de Los Ballenatos reefs. The AGRRA biological indicators were applied. The Northern Stretch presented the most resilient crests, mainly that of “Faro Cazones”. Those of the Southern Stretch did not reveal signs of resilience. Several interrelated factors were apparently more linked to resilience. Four of them were considered as driving forces: shelter from waves, usual cyclonic revolving water circulation in the Ensenada de Cazones, nutrient input from the Zapata swamp and deep water, and the abundance of the herbivore sea urchin Diadema antillarum. Triggered by these driving forces, the remaining factors apparently were less effect of waves and sediments, stabilization of live coral fragments, favorable benthic macro-algae indices, some retention of nutrient and plankton, increased coral heterotrophic feeding; better conditions for recruit settlement and viability, and for coral re-sheeting; faster coral growth and recuperation and better thermal conditions against coral bleaching.

Age and size composition, growth rate, reproductive biology, and habitats of the West Australian dhufish (Glaucosoma hebraicum) and their relevance to the management of this species

Samples of the commercially and recreationally important West Australian dhufish (Glaucosoma hebraicum) were obtained from the lower west coast of Australia by a variety of methods. Fish <300 mm TL were caught over flat, hard substrata and low-lying limestone reefs, whereas larger fish were caught over larger limestone and coral reef formations. Maximum total lengths, weights, and ages were 981 mm, 15.3 kg, and 39 years, respectively, for females and 1120 mm, 23.2 kg, and 41 years, respectively, for males. The von Bertalanffy growth curves for females and males were significantly different. The values for L∞, k, and t0 in the von Bertalanffy growth equations were 929 mm, 0.111/year, and –0.141 years, respectively, for females, and 1025 mm, 0.111/year, and –0.052 years, respectively, for males. Preliminary estimates of total mortality indicated that G. hebraicum is now subjected to a level of fishing pressure that must be of concern to fishery managers. Glaucosoma hebraicum, which spawns between November and April and predominantly between December and March, breeds at a wide range of depths and is a multiple spawner. The L50’s for females and males at first maturity, i.e. 301 and 320 mm, respectively, were attained by about the end of the third year of life and are well below the minimum legal length (MLL) of 500 mm. Because females and males did not reach the MLL until the end of their seventh and sixth years of life, respectively, they would have had, on average, the opportunity of spawning during four and three spawning seasons, respectively, before they reached the MLL. However, because G. hebraicum caught in water depths >40 m typically die upon release, a MLL is of limited use for conserving this species. Alternative approaches, such as restricting fishing activity in highly fished areas, reducing daily bag limits for recreational fishermen, introducing quotas or revising specific details of certain commercial hand-line licences (or doing both) are more likely to provide effective conservation measures.

Current velocity and catch efficiency in sampling settlement-stage larvae of coral-reef fishes

Light traps and channel nets are fixed-position devices that involve active and passive sampling, respectively, in the collection of settlement-stage larvae of coral-reef fishes. We compared the abundance, taxonomic composition, and size of such larvae caught by each device deployed simultaneously near two sites that differed substantially in current velocity. Light traps were more selective taxonomically, and the two sampling devices differed significantly in the abundance but not size of taxa caught. Most importantly, light traps and channel nets differed greatly in their catch efficiency between sites: light traps were ineffective in collecting larvae at the relatively high-current site, and channel nets were less efficient in collecting larvae at the low-current site. Use of only one of these sampling methods would clearly result in biased and inaccurate estimates of the spatial variation in larval abundance among locations that differ in current velocity. When selecting a larval sampling device, one must consider not only how well a particular taxon may be represented, but also the environmental conditions under which the device will be deployed.

A modern pollen record from the central Gulf of California

As one facet of an effort to tie the pollen record of central Gulf of California deep cores to modern analogs, pollen was analyzed in the uppermost 150-200 years of varved core 7807-1410 taken nearby. Sampling at 2- to 8-year resolution yielded a noncomplacent record, suggesting pollen in these sediments may be a potential high resolution proxy record of short-term climatic events. The pollen spectrum as a whole matches that of upper-most DSDP Site 480 (means of all samples). Lack of a ratio or influx shift following damming of local rivers and a surplus of low-spine Compositae pollen relative to mainland sites support Baumgartner's theory that terrigenous influx to the site is largely aeolian and also suggest that a significant fraction of the pollen influx may come from Baja California.