Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip

Background: Recent studies in pigs have detected copy number variants (CNVs) using the Comparative Genomic Hybridization technique in arrays designed to cover specific porcine chromosomes. The goal of this study was to identify CNV regions (CNVRs) in swine species based on whole genome SNP genotyping chips. Results: We used predictions from three different programs (cnvPartition, PennCNV and GADA) to analyze data from the Porcine SNP60 BeadChip. A total of 49 CNVRs were identified in 55 animals from an Iberian x Landrace cross (IBMAP) according to three criteria: detected in at least two animals, contained three or more consecutive SNPs and recalled by at least two programs. Mendelian inheritance of CNVRs was confirmed in animals belonging to several generations of the IBMAP cross. Subsequently, a segregation analysis of these CNVRs was performed in 372 additional animals from the IBMAP cross and its distribution was studied in 133 unrelated pig samples from different geographical origins. Five out of seven analyzed CNVRs were validated by real time quantitative PCR, some of which coincide with well known examples of CNVs conserved across mammalian species. Conclusions: Our results illustrate the usefulness of Porcine SNP60 BeadChip to detect CNVRs and show that structural variants can not be neglected when studying the genetic variability in this species.

Metabolic responses of guava trees irrigated withdifferent N and K levels in São Francisco Valley

The guava (Psidium guajava L.) cv. Paluma has been cultivated in São Francisco Valley, Northeastern of Brazil, for in natura consumption and processing purposes. In spite of its importance, there are few scientific knowledge regarding guava physiology, nutrition, irrigation and fertigation. The objective of this work was to evaluate the effect of weather conditions and different concentrations of N and K applied by fertigation in foliar contents of reducing sugars, total soluble sugars, starch, sucrose, amino acids, and proteins. The field experiment was carried out at Bebedouro Experimental Field and the biochemical evaluations at the Laboratory of Seed and Plant Physiology, both located at Embrapa Semi-Árido, Petrolina-PE. The doses of 200 g N and 100 g K2O; 400 g N and 200 g K2O; 600 g N and 300 g K2O; and 800 g N and 400 g K2O per plant were applied in an experiment field. The experimental design was totally randomized blocks, with four treatments and five blocks. The weather conditions influenced the plant photosynthesis, which affects the plants metabolism. Guava presented specific responses to N and K fertigation for each parameter evaluated. The weather conditions during the evaluation period influenced guava responses to N and K fertigation.

Is the adiposity-associated FTO gene variant related to all-cause mortality independent of adiposity? Meta-analysis of data from 169,551 Caucasian adults.

Previously, a single nucleotide polymorphism (SNP), rs9939609, in the FTO gene showed a much stronger association with all-cause mortality than expected from its association with body mass index (BMI), body fat mass index (FMI) and waist circumference (WC). This finding implies that the SNP has strong pleiotropic effects on adiposity and adiposity-independent pathological pathways that leads to increased mortality. To investigate this further, we conducted a meta-analysis of similar data from 34 longitudinal studies including 169,551 adult Caucasians among whom 27,100 died during follow-up. Linear regression showed that the minor allele of the FTO SNP was associated with greater BMI (n = 169,551; 0.32 kg m(-2) ; 95% CI 0.28-0.32, P < 1 × 10(-32) ), WC (n = 152,631; 0.76 cm; 0.68-0.84, P < 1 × 10(-32) ) and FMI (n = 48,192; 0.17 kg m(-2) ; 0.13-0.22, P = 1.0 × 10(-13) ). Cox proportional hazard regression analyses for mortality showed that the hazards ratio (HR) for the minor allele of the FTO SNPs was 1.02 (1.00-1.04, P = 0.097), but the apparent excess risk was eliminated after adjustment for BMI and WC (HR: 1.00; 0.98-1.03, P = 0.662) and for FMI (HR: 1.00; 0.96-1.04, P = 0.932). In conclusion, this study does not support that the FTO SNP is associated with all-cause mortality independently of the adiposity phenotypes.

Enraizamento de estacas herbáceas de diferentes espécies de maracujazeiro

O trabalho foi realizado na Área de Propagação de Fruteiras do Departamento de Produção Vegetal da Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista (FCAV/UNESP), em Jaboticabal-SP, com o objetivo de verificar a possibilidade de obtenção de mudas por estaquia de maracujá (Passiflora spp.), nas espécies comerciais P. edulis Sims f. flavicarpa Degener e P. alata Dryander, e nos porta-enxertos P. giberti N.E.Brown, P. nitida H.B.K. e P. setacea D.C. O experimento foi realizado no período de junho de 2000 a junho de 2001, em câmara de nebulização intermitente, em condições de telado (50% de sombreamento). As estacas foram coletadas de plantas adultas, oriundas do Banco de Germoplasma Ativo (BAG) do Departamento de Produção Vegetal da FCAV/UNESP e de pomares comerciais, no caso a espécie P. edulis f. flavicarpa, coletando-se a parte intermediária de ramos em estádio de crescimento vegetativo, preparando-se estacas herbáceas com, aproximadamente, 15cm de comprimento, três nós e duas folhas reduzidas ao meio, coletadas em junho e outubro de 2000, e abril de 2001. As estacas foram tratadas com ácido indolbutírico (IBA) nas concentrações de 500; 1.000 e 2.000mg.L-1, por cinco segundos, e sem tratamento (testemunha), e plantadas em bandejas plásticas (40x30x10cm), com vermiculita de textura média, por 60 dias. A percentagem de enraizamento foi maior na espécie P. edulis f. flavicarpa (76,7%), na primavera. A P. giberti e a P. nitida enraizaram na primavera e no inverno, e a P. alata em todas as épocas estudadas. A P. setacea não enraizou. A sobrevivência, o número e o comprimento de raízes foram maiores na primavera.

Fertirrigação da bananeira cv. Prata-Anã com N e K em um argissolo vermelho-amarelo

O Nordeste brasileiro é a principal região produtora de banana, responsável por cerca de 35,80% da produção nacional. Apesar das condições favoráveis ao seu cultivo, a produtividade tem sido muito abaixo do seu potencial. Geralmente, isso se deve a problemas de suprimento hídrico e nutricional. Dentre os nutrientes, o nitrogênio (N) e o potássio (K) são requeridos em maiores quantidades pela bananeira. Com o objetivo de estudar o efeito de quatro doses de N (0; 117; 235 e 352 kg ha-1 de N) e de K (0; 157; 313 e 470 kg ha-1 de K2O), aplicados via fertirrigação, avaliaram-se características produtivas de um 2º ciclo de cultivo da banana cv. Prata-Anã, em um Argissolo Vermelho-Amarelo dos tabuleiros costeiros do Nordeste brasileiro. O N não influenciou na produção de banana, enquanto a resposta ao K foi linear. O nível crítico de K pelo Mehlich-1, na profundidade de 0,20- 0,40 m, foi 0,71 mmol c kg-1.

Prevalence of cerebral amyloid pathology in persons without dementia: a meta-analysis.

IMPORTANCE: Cerebral amyloid-β aggregation is an early pathological event in Alzheimer disease (AD), starting decades before dementia onset. Estimates of the prevalence of amyloid pathology in persons without dementia are needed to understand the development of AD and to design prevention studies. OBJECTIVE: To use individual participant data meta-analysis to estimate the prevalence of amyloid pathology as measured with biomarkers in participants with normal cognition, subjective cognitive impairment (SCI), or mild cognitive impairment (MCI). DATA SOURCES: Relevant biomarker studies identified by searching studies published before April 2015 using the MEDLINE and Web of Science databases and through personal communication with investigators. STUDY SELECTION: Studies were included if they provided individual participant data for participants without dementia and used an a priori defined cutoff for amyloid positivity. DATA EXTRACTION AND SYNTHESIS: Individual records were provided for 2914 participants with normal cognition, 697 with SCI, and 3972 with MCI aged 18 to 100 years from 55 studies. MAIN OUTCOMES AND MEASURES: Prevalence of amyloid pathology on positron emission tomography or in cerebrospinal fluid according to AD risk factors (age, apolipoprotein E [APOE] genotype, sex, and education) estimated by generalized estimating equations. RESULTS: The prevalence of amyloid pathology increased from age 50 to 90 years from 10% (95% CI, 8%-13%) to 44% (95% CI, 37%-51%) among participants with normal cognition; from 12% (95% CI, 8%-18%) to 43% (95% CI, 32%-55%) among patients with SCI; and from 27% (95% CI, 23%-32%) to 71% (95% CI, 66%-76%) among patients with MCI. APOE-ε4 carriers had 2 to 3 times higher prevalence estimates than noncarriers. The age at which 15% of the participants with normal cognition were amyloid positive was approximately 40 years for APOE ε4ε4 carriers, 50 years for ε2ε4 carriers, 55 years for ε3ε4 carriers, 65 years for ε3ε3 carriers, and 95 years for ε2ε3 carriers. Amyloid positivity was more common in highly educated participants but not associated with sex or biomarker modality. CONCLUSIONS AND RELEVANCE: Among persons without dementia, the prevalence of cerebral amyloid pathology as determined by positron emission tomography or cerebrospinal fluid findings was associated with age, APOE genotype, and presence of cognitive impairment. These findings suggest a 20- to 30-year interval between first development of amyloid positivity and onset of dementia.

Extração de nutrientes pelos ramos frutíferos de caquizeiro cultivar giombo durante um ciclo de produção

A literatura brasileira apresenta poucos dados para subsidiar a recomendação de adubação para a cultura do caquizeiro, portanto o objetivo deste trabalho foi estudar o acúmulo de massa seca e macronutrientes nos órgãos que compõem o ramo produtivo, ao longo dos estádios fenológicos da cultura de caqui cultivar Giombo e quantificar as necessidades de nutrientes para a produção. O estudo foi realizado em pomar localizado no município de Faxinal-PR, e as amostragens de ramos frutíferos foram iniciadas três semanas após o início da brotação, repetidas a cada três semanas, durante 45 semanas. Foram realizadas análises químicas dos materiais coletados e determinada a extração de nutrientes ao longo do estádio de desenvolvimento. O total de macronutrientes exportados pela colheita dos frutos foram: 25,47; 5.72; 51.53; 6.76; 2.79 e 5,09, respectivamente, para N, P, K, Ca, Mg e S em kg por ha, para produtividade de 27.7 toneladas por ha de fruto, e os exportados pela retirada de ramos podados para fora do pomar, por questões fitossanitárias, foram: 2,1; 0,3; 1,1; 5,8; 0,5 e 0,4 kg de N, P, K, Ca, Mg e S em kg por ha.

Being Small for Gestational Age: Does it Matter for the Neurodevelopment of Premature Infants? A Cohort Study.

BACKGROUND: Whether being small for gestational age (SGA) increases the risk of adverse neurodevelopmental outcome in premature infants remains controversial. OBJECTIVE: to study the impact of SGA (birthweight < percentile 10) on cognition, behavior, neurodevelopmental impairment and use of therapy at 5 years old. METHODS: This population-based prospective cohort included infants born before 32 weeks of gestation. Cognition was evaluated with the K-ABC, and behavior with the Strengths and Difficulties Questionnaire (SDQ). Primary outcomes were cognitive and behavioral scores, as well as neurodevelopmental impairment (cognitive score < 2SD, hearing loss, blindness, or cerebral palsy). The need of therapy, an indirect indicator of neurodevelopmental impairment, was a secondary outcome. Linear and logistic regression models were used to analyze the association of SGA with neurodevelopment. RESULTS: 342/515 (76%) premature infants were assessed. SGA was significantly associated with hyperactivity scores of the SDQ (coefficient 0.81, p < 0.04), but not with cognitive scores, neurodevelopmental impairment or the need of therapy. Gestational age, socio-economic status, and major brain lesions were associated with cognitive outcome in the univariate and multivariate model, whereas asphyxia, sepsis and bronchopulmonary dysplasia were associated in the univariate model only. Severe impairment was associated with fetal tobacco exposition, asphyxia, gestational age and major brain lesions. Different neonatal factors were associated with the use of single or multiple therapies: children with one therapy were more likely to have suffered birth asphyxia or necrotizing enterocolitis, whereas the need for several therapies was predicted by major brain lesions. DISCUSSION: In this large cohort of premature infants, assessed at 5 years old with a complete panel of tests, SGA was associated with hyperactive behavior, but not with cognition, neurodevelopmental impairment or use of therapy. Birthweight <10th percentile alone does not appear to be an independent risk factor of neurodevelopmental adverse outcome in preterm children.