Measurement errors in body size of sea scallops (Placopecten magellanicus) and their effect on stock assessment models

Body-size measurement errors are usually ignored in stock assessments, but may be important when body-size data (e.g., from visual sur veys) are imprecise. We used experiments and models to quantify measurement errors and their effects on assessment models for sea scallops (Placopecten magellanicus). Errors in size data obscured modes from strong year classes and increased frequency and size of the largest and smallest sizes, potentially biasing growth, mortality, and biomass estimates. Modeling techniques for errors in age data proved useful for errors in size data. In terms of a goodness of model fit to the assessment data, it was more important to accommodate variance than bias. Models that accommodated size errors fitted size data substantially better. We recommend experimental quantification of errors along with a modeling approach that accommodates measurement errors because a direct algebraic approach was not robust and because error parameters were diff icult to estimate in our assessment model. The importance of measurement errors depends on many factors and should be evaluated on a case by case basis.

Evaluation of the capture efficiency and size selectivity of four pot types in the prospective fishery for North Pacific giant octopus (Enteroctopus dofleini)

Over 230 metric tons of octopus is harvested as bycatch annually in Alaskan trawl, long-line, and pot fisheries. An expanding market has fostered interest in the development of a directed fishery for North Pacific giant octopus (Enteroctopus dofleini). To investigate the potential for fishery development we examined the efficacy of four different pot types for capture of this species. During two surveys in Kachemak Bay, Alaska, strings of 16 –20 sablefish, Korean hair crab, shrimp, and Kodiak wooden lair pots were set at depths ranging between 62 and 390 meters. Catch per-unit-of-ef for t estimates were highest for sablefish and lair pots. Sablefish pots caught significantly heavier North Pacific giant octopuses but also produced the highest bycatch of commercially important species, such as halibut (Hippoglossus stenolepis), Pacific cod (Gadus macrocephalus), and Tanner crab (Chionoecetes bairdi).

Reconstruction of original body size and estimation of allometric relationships for the longfin inshore squid (Loligo pealeii) and northern shortfin squid (Illex illecebrosus)

Quantification of predator-prey body size relationships is essential to understanding trophic dynamics in marine ecosystems. Prey lengths recovered from predator stomachs help determine the sizes of prey most influential in supporting predator growth and to ascertain size-specific effects of natural mortality on prey populations (Bax, 1998; Claessen et al., 2002). Estimating prey size from stomach content analyses is often hindered because of the degradation of tissue and bone by digestion. Furthermore, reconstruction of original prey size from digested remains requires species-specific reference materials and techniques. A number of diagnostic guides for freshwater (Hansel et al., 1988) and marine (Watt et al., 1997; Granadeiro and Silva, 2000) prey species exist; however they are limited to specific geographic regions (Smale et al., 1995; Gosztonyi et al., 2007). Predictive equations for reconstructing original prey size from diagnostic bones in marine fishes have been developed in several studies of piscivorous fishes of the Northwest Atlantic Ocean (Scharf et al., 1998; Wood, 2005). Conversely, morphometric relationships for cephalopods in this region are scarce despite their importance to a wide range of predators, such as finfish (Bowman et al., 2000 ; Staudinger, 2006), elasmobranchs (Kohler, 1987), and marine mammals (Gannon et al., 1997; Williams, 1999).

A 4500-year time series of Pacific cod (Gadus macrocephalus) size and abundance: archaeology, oceanic regime shifts, and sustainable fisheries

A 4500-year archaeological record of Pacific cod (Gadus macrocephalus) bones from Sanak Island, Alaska, was used to assess the sustainability of the modern fishery and the effects of this fishery on the size of fish caught. Allometric reconstructions of Pacific cod length for eight prehistoric time periods indicated that the current size of the nearshore, commercially fished Pacific cod stocks is statistically unchanged from that of fish caught during 4500 years of subsistence harvesting. This finding indicates that the current Pacific cod fishery that uses selective harvesting technolog ies is a sustainable commercial fishery. Variation in relative Pacific cod abundances provides further insights into the response of this species to punctuated changes in ocean climate (regime shifts) and indicates that Pacific cod stocks can recover from major environmental perturbations. Such palaeofisheries data can extend the short time-series of fisheries data (<50 yr) that form the basis for fisheries management in the Gulf of Alaska and place current trends within the context of centennial- or millennial-scale patterns.

Distribution of red deepsea crab (Chaceon quinquedens) by size and sex in the Gulf of Mexico

The red deepsea crab (Chaceon quinquedens (Smith, 1879)) has supported a commercial fishery off the coast of New England since the 1970s (Wigley et al., 1975) and has had annual harvests from 400 metric tons (t) (1996) to 4000 t (2001) (NEFMC, 2002). In 2002, a fishery management plan for the northeast fishery on the Atlantic coast was implemented and total allowable catch was reduced to approximately 2500 t (NEFMC, 2002). Although there are management plans for the golden crab (C. fenneri) and the red deep sea crab for Atlantic coast regions, there is no fishery management plan for red deepsea crabs in the Gulf of Mexico. Successful management for sustainable harvests should be based on a knowledge of the life history of the species, but C. quinquedens has been a difficult species for which to obtain life history and abundance information because of its deep distribution.

No evidence of bias from fish behavior in the selectivity of size and sex of the protogynous red porgy (Pagrus pagrus, Sparidae) by hook-and-line gear

Most fisheries select the size of fish to be caught (are size selective), and many factors, including gear, market demands, species distributions, fishery laws, and the behavior of both fishermen and fish, can contribute to that selectivity. Most fishing gear is size-selective and some, such as gill nets, are more so than others. The targeting behavior of fishermen is another key reason commercial and recreational fisheries tend to be size-selective. The more successful fishermen constantly seek areas and methods that yield larger or more profitable sizes of fish. Fishery regulations, especially size limits, produce size-selective harvests. Another factor with the potential to cause selectivity in a hook-and-line fishery is the different behavioral responses of fish to the bait or lure, whether the different responses arise among different fish sizes or between the sexes.

The role of mate guarding, Male Size and Male Investment on Individual Reproductive Success in the Blue Crab, Callinectes Sapidus.

Male blue crabs, Callinectes Sapidus, guard their mates before and after mating, suggesting that the conditions regulating both types of mate guarding dictate individual reproductive success. I tested the hypothesis that large male blue crabs have advantages in sexual competition using experimental manipulations, a simulation model, and field data on crabs from mid-Chesapeake Bay between 1991-1994.

Estimating species and size composition of rockfishes to verify targets in acoustic surveys of untrawlable areas

Rockfish (Sebastes spp.) biomass is difficult to assess with standard bottom trawl or acoustic surveys because of their propensity to aggregate near the seafloor in highrelief areas that are inaccessible to sampling by trawling. We compared the ability of a remotely operated vehicle (ROV), a modified bottom trawl, and a stereo drop camera system (SDC) to identify rockfish species and estimate their size composition. The ability to discriminate species was highest for the bottom trawl and lowest for the SDC. Mean lengths and size distributions varied among the gear types, although a larger number of length measurements could be collected with the bottom trawl and SDC than with the ROV. Dusky (S. variabilis), harlequin (S. variegatus), and northern rockfish (S. polyspinis), and Pacific ocean perch (S. alutus) were the species observed in greatest abundance. Only dusky and northern rockfish regularly occurred in trawlable areas, whereas these two species and many more occurred in untrawlable areas. The SDC was able to resolve the height of fish off the seafloor, and some of the rockfish species were observed only near the seafloor in the acoustic dead zone. This finding is important, in that fish found exclusively in the acoustic dead zone cannot be assessed acoustically. For these species, methods such as bottom trawls, long-lines, or optical surveys using line transect or area swept methods will be the only adequate means to estimate the abundance of these fishes. Our results suggest that the selection of appropriate methods for verifying targets will depend on the habitat types and species complexes to be examined.

Evaluating methods for estimating rare events with zero-heavy data: a simulation model estimating sea turtle bycatch in the pelagic longline fishery

Estimating rare events from zero-heavy data (data with many zero values) is a common challenge in fisheries science and ecology. For example, loggerhead sea turtles (Caretta caretta) and leatherback sea turtles (Dermochelys coriacea) account for less than 1% of total catch in the U.S. Atlantic pelagic longline fishery. Nevertheless, the Southeast Fisheries Science Center (SEFSC) of the National Marine Fisheries Service (NMFS) is charged with assessing the effect of this fishery on these federally protected species. Annual estimates of loggerhead and leatherback bycatch in a fishery can affect fishery management and species conservation decisions. However, current estimates have wide confidence intervals, and their accuracy is unknown. We evaluate 3 estimation methods, each at 2 spatiotemporal scales, in simulations of 5 spatial scenarios representing incidental capture of sea turtles by the U.S. Atlantic pelagic longline fishery. The delta-log normal method of estimating bycatch for calendar quarter and fishing area strata was the least biased estimation method in the spatial scenarios believed to be most realistic. This result supports the current estimation procedure used by the SEFSC.

Área de vida do lagarto saxícola Tropidurus semitaeniatus (Squamata: Tropiduridae) em área de Caatinga, Nordeste do Brasil

A área de vida pode ser definida como o espaço físico necessário para um animal desempenhar as atividades essenciais para sua sobrevivência, desenvolvimento e reprodução. O conhecimento sobre área de vida é essencial para a compreensão dos processos que regem o uso do espaço e a organização social em populações animais. Neste estudo, investigamos aspectos das áreas de vida do lagarto saxícola, endêmico da Caatinga, Tropidurus semitaeniatus, avaliando possíveis variações intersexuais, ontogenéticas e sazonais nos tamanhos das áreas de vida, bem como elementos da organização social da espécie. A área de estudo consistiu em uma área típica de Caatinga stricto sensu, localizada no município de Pentecoste - Ceará. Realizamos coletas em dois afloramentos rochosos, nos quais demarcamos pontos de referência a cada cinco metros. Coletamos os lagartos residentes nestes afloramentos, registrando, para cada indivíduo, o sexo e o tamanho rostro-cloacal (mm), e posteriormente, identificando-o com marcação única. Vistoriamos cada afloramento durante 20 dias em cada estação (chuvosa e seca), respectivamente em junho e dezembro de 2011, realizando recapturas visuais e coletando registros de posições espaciais de cada indivíduo. Estimamos as áreas de vida pelo método do Polígono Convexo Mínimo, para os indivíduos recapturados pelo menos seis vezes. Obtivemos 56 áreas de vida, das quais 10 foram de machos, 20 de fêmeas e 26 de jovens. Não existiu relação entre os tamanhos das áreas de vida e os comprimentos rostro-cloacais dos indivíduos. Não houve diferenças sexuais, ontogenéticas ou sazonais nos tamanhos das áreas de vida. Contudo, o espaçamento entre as áreas de vida foi menor durante a estação chuvosa e a maioria das sobreposições entre áreas de vida também ocorreu neste período. Ao todo, registramos 81 sobreposições de áreas de vida, sendo estas mais frequentes entre fêmeas e jovens e menos frequentes entre pares de machos. A proporção da área de vida total sobreposta com outro indivíduo foi maior entre pares de fêmeas e menor entre pares de machos. Os machos estiveram associados em média com 1,5 fêmeas, possuindo de zero a sete áreas de vida de fêmeas sobrepostas com suas áreas de vida. O número de áreas de vida de fêmeas sobrepostas às áreas de vida de machos esteve positivamente associado ao tamanho dos machos. Por outro lado, não houve associação entre o número de áreas de vida de fêmeas sobrepostas às áreas de vida de machos e os tamanhos das áreas de vida dos machos correspondentes. Em suma, à luz do conhecimento acumulado sobre a história natural do organismo de estudo, acreditamos que sua extrema especificidade por ambientes rochosos e a disponibilidade limitada de habitats adequados à ocupação constituem fatores preponderantes na determinação dos padrões singulares de uso do espaço e organização social em T. semitaeniatus.

New Nuclear SNP Markers Unravel the Genetic Structure and Effective Population Size of Albacore Tuna (Thunnus alalunga)

In the present study we have investigated the population genetic structure of albacore (Thunnus alalunga, Bonnaterre 1788) and assessed the loss of genetic diversity, likely due to overfishing, of albacore population in the North Atlantic Ocean. For this purpose, 1,331 individuals from 26 worldwide locations were analyzed by genotyping 75 novel nuclear SNPs. Our results indicated the existence of four genetically homogeneous populations delimited within the Mediterranean Sea, the Atlantic Ocean, the Indian Ocean and the Pacific Ocean. Current definition of stocks allows the sustainable management of albacore since no stock includes more than one genetic entity. In addition, short-and long-term effective population sizes were estimated for the North Atlantic Ocean albacore population, and results showed no historical decline for this population. Therefore, the genetic diversity and, consequently, the adaptive potential of this population have not been significantly affected by overfishing.

Degradação de corante por partículas de ferro zero suportadas em sílica

A água é um bem essencial a todos os seres vivos. Porém, o homem não tem dado o valor e atenção necessários para a preservação dessa riqueza. Por mais que o ser humano não faça a água desaparecer do planeta, ele tem contribuído e muito para o decréscimo de sua qualidade. Dentre as várias atividades antropogênicas, que tem contribuído para a poluição das águas, destaca-se a atividade industrial. A indústria têxtil, por exemplo, libera enormes volumes de dejetos, destacando-se os corantes, além deles prejudicarem a ocorrência de fotossíntese, apresentam elevada toxicidade ao meio marinho. Com isso, este trabalho visa estudar a degradação do corante Alaranjado de Metila via catálise heterogênea. Neste estudo, foram realizadas a preparação e a caracterização de partículas metálicas estabilizadas em sílica, sendo essas partículas com diferentes teores de ferro (50 %wt, 25 %wt e 5 %wt) aderido ao suporte. Após o preparo dos catalisadores realizou-se o estudo de sua eficiência frente a diferentes parâmetros como: quantidade de catalisador, temperatura e pH. Por meio dos testes realizados foi possível observar que a quantidade do catalisador influência a reação de redução do corante Alaranjado de Metila. Porém, quando se atinge o ponto de saturação, mesmo que se adicione mais catalisador não é possível aumentar a degradação. Através da variação da temperatura, observou-se que quanto maior a temperatura maior a degradação do corante. Isso pode ser explicado devido o aumento do número de colisões entre os sítios ativos do catalisador e as moléculas do corante. E por meio da variação de pH, concluiu-se que pHs ácidos permitem que a reação de redução do corante ocorra mais rápido e pHs elevados tornam a reação de degradação do corante mais lenta, porém ainda assim ocorrem de forma satisfatória. O catalisador pôde ser reutilizado por até 3 vezes, sem nenhum tratamento prévio. Os catalisadores a 50 %wt, assim como, a 25 %wt foram capazes de degradar o corante de forma eficiente, porém o catalisador a 5 %wt não se mostrou ser eficaz. Foram realizados testes sob radiação microondas e a reação de redução ocorreu de forma muito eficaz, apresentando 100% de degradação em apenas 2 minutos. Além disso, realizou-se o estudo cinético, onde segundo dados experimentais, as reações foram classificadas como sendo de primeira ordem

Population structure and variance effective size of red snapper (Lutjanus campechanus) in the northern Gulf of Mexico*

We assayed allelic variation at 19 nuclear-encoded microsatellites among 1622 Gulf red snapper (Lutjanus campechanus) sampled from the 1995 and 1997 cohorts at each of three offshore localities in the northern Gulf of Mexico (Gulf). Localities represented western, central, and eastern subregions within the northern Gulf. Number of alleles per microsatellite per sample ranged from four to 23, and gene diversity ranged from 0.170 to 0.917. Tests of conformity to Hardy-Weinberg equilibrium expectations and of genotypic equilibrium between pairs of micro-satellites were generally nonsignificant following Bonferroni correction. Significant genic or genotypic heterogeneity (or both) among samples was detected at four microsatellites and over all microsatellites. Levels of divergence among samples were low (FST ≤0.001). Pairwise exact tests revealed that six of seven “significant” comparisons involved temporal rather than spatial heterogeneity. Contemporaneous or variance effective size (NeV) was estimated from the temporal variance in allele frequencies by using a maximum-likelihood method. Estimates of NeV ranged between 1098 and >75,000 and differed significantly among localities; the NeV estimate for the sample from the northcentral Gulf was >60 times as large as the estimates for the other two localities. The differences in variance effective size could ref lect differences in number of individuals successfully reproducing, differences in patterns and intensity of immigration, or both, and are consistent with the hypothesis, supported by life-history data, that different “demographic stocks” of red snapper are found in the northern Gulf. Estimates of NeV for red snapper in the northern Gulf were at least three orders of magnitude lower than current estimates of census size (N). The ratio of effective to census size (Ne/N) is far below that expected in an ideal population and may reflect high variance in individual reproductive success, high temporal and spatial variance in productivity among subregions or a combination of the two.

Patterns of growth, mortality, and size of the tropical damselfish Acanthochromis polyacanthus across the continental shelf of the Great Barrier Reef

Age-based analyses were used to demonstrate consistent differences in growth between populations of Acanthochromis polyacanthus (Pomacentridae) collected at three distance strata across the continental shelf (inner, mid-, and outer shelf) of the central Great Barrier Reef (three reefs per distance stratum). Fish had significantly greater maximum lengths with increasing distance from shore, but fish from all distances reached approximately the same maximum age, indicating that growth is more rapid for fish found on outer-shelf reefs. Only one fish collected from inner-shelf reefs reached >100 mm SL, whereas 38−67% of fish collected from the outer shelf were >100 mm SL. The largest age class of adult-size fish collected from inner and mid-shelf locations comprised 3−4 year-olds, but shifted to 2-year-olds on outer-shelf reefs. Mortality schedules (Z and S) were similar irrespective of shelf position (inner shelf: 0.51 and 60.0%; mid-shelf: 0.48 and 61.8%; outer shelf: 0.43 and 65.1%, respectively). Age validation of captive fish indicated that growth increments are deposited annually, between the end of winter and early spring. The observed cross-shelf patterns in adult sizes and growth were unlikely to be a result of genetic differences between sample populations because all fish collected showed the same color pattern. It is likely that cross-shelf variation in quality and quantity of food, as well as in turbidity, are factors that contribute to the observed patterns of growth. Similar patterns of cross-shelf mortality indicate that predation rates varied little across the shelf. Our study cautions against pooling demographic parameters on broad spatial scales without consideration of the potential for cross-shelf variabil