Inter-comparison and performance evaluation of chemistry transport models over Indian region

Aerosol loading over the South Asian region has the potential to affect the monsoon rainfall, Himalayan glaciers and regional air-quality, with implications for the billions in this region. While field campaigns and network observations provide primary data, they tend to be location/season specific. Numerical models are useful to regionalize such location-specific data. Studies have shown that numerical models underestimate the aerosol scenario over the Indian region, mainly due to shortcomings related to meteorology and the emission inventories used. In this context, we have evaluated the performance of two such chemistry-transport models: WRF-Chem and SPRINTARS over an India-centric domain. The models differ in many aspects including physical domain, horizontal resolution, meteorological forcing and so on etc. Despite these differences, both the models simulated similar spatial patterns of Black Carbon (BC) mass concentration, (with a spatial correlation of 0.9 with each other), and a reasonable estimates of its concentration, though both of them under-estimated vis-a-vis the observations. While the emissions are lower (higher) in SPRINTARS (WRF-Chem), overestimation of wind parameters in WRF-Chem caused the concentration to be similar in both models. Additionally, we quantified the under-estimations of anthropogenic BC emissions in the inventories used these two models and three other widely used emission inventories. Our analysis indicates that all these emission inventories underestimate the emissions of BC over India by a factor that ranges from 1.5 to 2.9. We have also studied the model simulations of aerosol optical depth over the Indian region. The models differ significantly in simulations of AOD, with WRF-Chem having a better agreement with satellite observations of AOD as far as the spatial pattern is concerned. It is important to note that in addition to BC, dust can also contribute significantly to AOD. The models differ in simulations of the spatial pattern of mineral dust over the Indian region. We find that both meteorological forcing and emission formulation contribute to these differences. Since AOD is column integrated parameter, description of vertical profiles in both models, especially since elevated aerosol layers are often observed over Indian region, could be also a contributing factor. Additionally, differences in the prescription of the optical properties of BC between the models appear to affect the AOD simulations. We also compared simulation of sea-salt concentration in the two models and found that WRF-Chem underestimated its concentration vis-a-vis SPRINTARS. The differences in near-surface oceanic wind speeds appear to be the main source of this difference. In-spite of these differences, we note that there are similarities in their simulation of spatial patterns of various aerosol species (with each other and with observations) and hence models could be valuable tools for aerosol-related studies over the Indian region. Better estimation of emission inventories could improve aerosol-related simulations. (C) 2015 Elsevier Ltd. All rights reserved.

Ischaemic concentrations of lactate increase TREK1 channel activity by interacting with a single histidine residue in the carboxy terminal domain

Key points The physiological metabolite, lactate and the two-pore domain leak potassium channel, TREK1 are known neuroprotectants against cerebral ischaemia. However, it is not known whether lactate interacts with TREK1 channel to provide neuroprotection. In this study we show that lactate increases TREK1 channel activity and hyperpolarizes CA1 stratum radiatum astrocytes in hippocampal slices. Lactate increases open probability and decreases longer close time of the human (h)TREK1 channel in a concentration dependent manner. Lactate interacts with histidine 328 (H328) in the carboxy terminal domain of hTREK1 channel to decrease its dwell time in the longer closed state. This interaction was dependent on the charge on H328. Lactate-insensitive mutant H328A hTREK1 showed pH sensitivity similar to wild-type hTREK1, indicating that the effect of lactate on hTREK1 is independent of pH change. AbstractA rise in lactate concentration and the leak potassium channel TREK1 have been independently associated with cerebral ischaemia. Recent literature suggests lactate to be neuroprotective and TREK1 knockout mice show an increased sensitivity to brain and spinal cord ischaemia; however, the connecting link between the two is missing. Therefore we hypothesized that lactate might interact with TREK1 channels. In the present study, we show that lactate at ischaemic concentrations (15-30mm) at pH7.4 increases TREK1 current in CA1 stratum radiatum astrocytes and causes membrane hyperpolarization. We confirm the intracellular action of lactate on TREK1 in hippocampal slices using monocarboxylate transporter blockers and at single channel level in cell-free inside-out membrane patches. The intracellular effect of lactate on TREK1 is specific since other monocarboxylates such as pyruvate and acetate at pH7.4 failed to increase TREK1 current. Deletion and point mutation experiments suggest that lactate decreases the longer close dwell time incrementally with increase in lactate concentration by interacting with the histidine residue at position 328 (H328) in the carboxy terminal domain of the TREK1 channel. The interaction of lactate with H328 is dependent on the charge on the histidine residue since isosteric mutation of H328 to glutamine did not show an increase in TREK1 channel activity with lactate. This is the first demonstration of a direct effect of lactate on ion channel activity. The action of lactate on the TREK1 channel signifies a separate neuroprotective mechanism in ischaemia since it was found to be independent of the effect of acidic pH on channel activity. Key points The physiological metabolite, lactate and the two-pore domain leak potassium channel, TREK1 are known neuroprotectants against cerebral ischaemia. However, it is not known whether lactate interacts with TREK1 channel to provide neuroprotection. In this study we show that lactate increases TREK1 channel activity and hyperpolarizes CA1 stratum radiatum astrocytes in hippocampal slices. Lactate increases open probability and decreases longer close time of the human (h)TREK1 channel in a concentration dependent manner. Lactate interacts with histidine 328 (H328) in the carboxy terminal domain of hTREK1 channel to decrease its dwell time in the longer closed state. This interaction was dependent on the charge on H328. Lactate-insensitive mutant H328A hTREK1 showed pH sensitivity similar to wild-type hTREK1, indicating that the effect of lactate on hTREK1 is independent of pH change.

Structural studies on tobacco streak virus coat protein: Insights into the pleomorphic nature of ilarviruses

Tobacco streak virus (TSV), the type member of Ilarvirus genus, is a major plant pathogen. TSV purified from infected plants consists of a ss-RNA genome encapsidated in spheroidal particles with diameters of 27, 30 and 33 nm constructed from multiple copies of a single species of coat protein (CP) subunits. Apart from protecting the viral genome, CPs of ilarviruses play several key roles in the life cycle of these viruses. Unlike the related bromo and cucumoviruses, ilarvirus particles are labile and pleomorphic, which has posed difficulties in their crystallization and structure determination. In the current study, a truncated TSV-CP was crystallized in two distinct forms and their structures were determined at resolutions of 2.4 angstrom and 2.1 angstrom, respectively. The core of TSV CP was found to possess the canonical beta-barrel jelly roll tertiary structure observed in several other viruses. Dimers of CP with swapped C-terminal arms (C-arm) were observed in both the crystal forms. The C-arm was found to be flexible and is likely to be responsible for the polymorphic and pleomorphic nature of TSV capsids. Consistent with this observation, mutations in the hinge region of the C-arm that reduce the flexibility resulted in the formation of more uniform particles. TSV CP was found to be structurally similar to that of Alfalfa mosaic virus (AMV) accounting for similar mechanism of genome activation in alfamo and ilar viruses. This communication represents the first report on the structure of the CP from an ilarvirus. (C) 2015 Elsevier Inc. All rights reserved.

Region-of-interest diffuse optical tomography system

Diffuse optical tomography (DOT) using near-infrared light is a promising tool for non-invasive imaging of deep tissue. This technique is capable of quantitative reconstruction of absorption (mu(a)) and scattering coefficient (mu(s)) inhomogeneities in the tissue. The rationale for reconstructing the optical property map is that the absorption coefficient variation provides diagnostic information about metabolic and disease states of the tissue. The aim of DOT is to reconstruct the internal tissue cross section with good spatial resolution and contrast from noisy measurements non-invasively. We develop a region-of-interest scanning system based on DOT principles. Modulated light is injected into the phantom/tissue through one of the four light emitting diode sources. The light traversing through the tissue gets partially absorbed and scattered multiple times. The intensity and phase of the exiting light are measured using a set of photodetectors. The light transport through a tissue is diffusive in nature and is modeled using radiative transfer equation. However, a simplified model based on diffusion equation (DE) can be used if the system satisfies following conditions: (a) the optical parameter of the inhomogeneity is close to the optical property of the background, and (b) mu(s) of the medium is much greater than mu(a) (mu(s) >> mu(a)). The light transport through a highly scattering tissue satisfies both of these conditions. A discrete version of DE based on finite element method is used for solving the inverse problem. The depth of probing light inside the tissue depends on the wavelength of light, absorption, and scattering coefficients of the medium and the separation between the source and detector locations. Extensive simulation studies have been carried out and the results are validated using two sets of experimental measurements. The utility of the system can be further improved by using multiple wavelength light sources. In such a scheme, the spectroscopic variation of absorption coefficient in the tissue can be used to arrive at the oxygenation changes in the tissue. (C) 2016 AIP Publishing LLC.

Anthropogenic aerosol fraction over the Indian region: model simulations versus multi-satellite data analysis

Anthropogenic aerosols play a crucial role in our environment, climate, and health. Assessment of spatial and temporal variation in anthropogenic aerosols is essential to determine their impact. Aerosols are of natural and anthropogenic origin and together constitute a composite aerosol system. Information about either component needs elimination of the other from the composite aerosol system. In the present work we estimated the anthropogenic aerosol fraction (AF) over the Indian region following two different approaches and inter-compared the estimates. We espouse multi-satellite data analysis and model simulations (using the CHIMERE Chemical transport model) to derive natural aerosol distribution, which was subsequently used to estimate AF over the Indian subcontinent. These two approaches are significantly different from each other. Natural aerosol satellite-derived information was extracted in terms of optical depth while model simulations yielded mass concentration. Anthropogenic aerosol fraction distribution was studied over two periods in 2008: premonsoon (March-May) and winter (November-February) in regard to the known distinct seasonality in aerosol loading and type over the Indian region. Although both techniques have derived the same property, considerable differences were noted in temporal and spatial distribution. Satellite retrieval of AF showed maximum values during the pre-monsoon and summer months while lowest values were observed in winter. On the other hand, model simulations showed the highest concentration of AF in winter and the lowest during pre-monsoon and summer months. Both techniques provided an annual average AF of comparable magnitude (similar to 0.43 +/- 0.06 from the satellite and similar to 0.48 +/- 0.19 from the model). For winter months the model-estimated AF was similar to 0.62 +/- 0.09, significantly higher than that (0.39 +/- 0.05) estimated from the satellite, while during pre-monsoon months satellite-estimated AF was similar to 0.46 +/- 0.06 and the model simulation estimation similar to 0.53 +/- 0.14. Preliminary results from this work indicate that model-simulated results are nearer to the actual variation as compared to satellite estimation in view of general seasonal variation in aerosol concentrations.

Load-Unload Response Ratio and Accelerating Moment/Energy Release Critical Region Scaling and Earthquake Prediction

The main idea of the Load-Unload Response Ratio (LURR) is that when a system is stable, its response to loading corresponds to its response to unloading, whereas when the system is approaching an unstable state, the response to loading and unloading becomes quite different. High LURR values and observations of Accelerating Moment/Energy Release (AMR/AER) prior to large earthquakes have led different research groups to suggest intermediate-term earthquake prediction is possible and imply that the LURR and AMR/AER observations may have a similar physical origin. To study this possibility, we conducted a retrospective examination of several Australian and Chinese earthquakes with magnitudes ranging from 5.0 to 7.9, including Australia's deadly Newcastle earthquake and the devastating Tangshan earthquake. Both LURR values and best-fit power-law time-to-failure functions were computed using data within a range of distances from the epicenter. Like the best-fit power-law fits in AMR/AER, the LURR value was optimal using data within a certain epicentral distance implying a critical region for LURR. Furthermore, LURR critical region size scales with mainshock magnitude and is similar to the AMR/AER critical region size. These results suggest a common physical origin for both the AMR/AER and LURR observations. Further research may provide clues that yield an understanding of this mechanism and help lead to a solid foundation for intermediate-term earthquake prediction.

Diagnostico de hemoparasitos en equinos en la region del Pacifico de Nicaragua utilizando frotis sanguineo

Con el objetivo de conocer la presencia de agentes Etiológicos causantes de homoparásitosis en equinos se realizó un estudio en la faja del Pacifico de Nicaragua durante los meses de Abril a Noviembre del 2006, en los Departamentos de Carazo, Chinandega, Granada, León, Managua, Masaya y Rivas. Esta zona geográfica del país presenta una temperatura media anual en el rango de 30ºC a 32ºC y una humedad relativa de 76% ± 78 5%; precipitación pluvial media anual en el rango de 1483.9 a 1970.0 mm; la altitud osciló entre 82.97 msnm a 580.13 msnm. Se realizo un muestreo de 150 equinos mayores de dos años, correspondiente al 1.30 % de la población muestradas, en los cuales se tomo 3cc de sangre de la vena yugular, mediante una punción, a las muestras de sangre se les realizo dos frotis sanguíneos, y se obtuvo el hematocrito de la misma , tiñéndose los frotis sanguíneos por el método de Giemsa, posteriormente se observaron los frotis sanguíneos por cada equino muestrado, se utilizo microscopia óptica de inmersión para identificar lo hemoparásitos haciendo uso de los parámetros morfológicos de sus clasificación taxonómica. Se encontraron 58 equinos positivos de Babesia ssp correspondiente al 38.66 % de los 150 equinos muestrados y 92 casos de equinos negativos de Babesia ssp correspondiente al 61.33 % de los 150 equinos muestrados. Además se encontró prevalencia de Babesia de 5.92% en toda la faja del pacifico, encontrando para cada uno de los Departamentos muestrados son: a Managua con un 7.14 %, Masaya 6.43%, Granada 5.71%, Rivas 7.14%, Carazo 3,57%, León 3,57%, Chinandega 7,86% de Babesia ssp.

Caracterizacion del comportamiento de la estomatitis vesicular en animales domesticos de pezuña hendida en la sexta region (Jinotega y Matagalpa) en el periodo 2008

El presente trabajo se realizó con el fin de contribuir al conocimiento dando a conocer la Caracterización del comportamiento de la estomatitis Vesicular en animales domésticos de pezuña hendida en la región VI (Jinotega y Matagalpa) en el periodo 2008, debido a su gran poder de difusión considerando que en Nicaragua no existe un programa de erradicación o control de la estomatitis vesicular, aunque los humanos también pueden contraer estomatitis vesicular. Se hizo necesario realizar un monitoreo de la enfermedad en esta región, determinar el tipo de cepa que es mas prevalente en la especie de pezuña hendida y el lugar anatómico que más afecta , se tomaron muestras en conjunto con técnicos del MAGFOR y fueron enviadas al Laboratorio de Diagnóstico de Enfermedades Vesiculares (LADIVES) ,localizado en Panamá, se llevó a cabo un análisis estadístico descriptivo, para este análisis se utilizó la información que se colectó en los casos atendidos entre el mes de Julio a Diciembre 2008 y la información retrospectiva de Enero a Junio, con apoyo de la base de datos de Enfermedades Vesiculares que lleva la oficina del Convenio Bilateral Antiaftosa (CAB) del MAGFOR Se elaboraron distribuciones de frecuencia, para las variables; diagnóstico, prevalencia, especie animal y región anatómica, lo que nos accedió informarnos sobre los valores concretos que adoptaron las variables a analizar y sobre el número(o porcentaje) de veces que se repite cada uno de esos valores y nos permitió construir los diagramas con los resultados, concluyendo que de un total de 132 muestras enviadas al laboratorio 82 resultaron positivas a Estomatitis Vesicular, 44 de ellas resultaron al serotipo New Jersey en la zona de Matagalpa y 33 en Jinotega, 5 resultaron positivas al serotipo Indian a en Matagalpa y en la región de Jinotega no se presentó ninguna positiva a este serotipo, la especie más afectada fue el bovino, de las 132 muestras enviadas 129 fueron tomadas en esta especie, siendo las pezuñas el lugar anatómico de mayor predilección para el virus, del total de muestras 91 se tomaran esta región, manifestándose con mayor frecuencia en épocas de lluvia sobre todo en los meses de mayo a octubre.

Fluctuacion poblacional de la broca del fruto del cafeto hypothenemus hampei Ferr. (Coleoptera: Scolytidae) en tres localidades de la VI region, Nicaragua

Durante el período de los meses de junio 1989 a febrero 1990, se estudió la fluctuación poblacional de la broca del fruto del cafeto Hypothenemus hampei Ferr. en alturas de 950,1000 y 11SO m.s.n.m en la Región VI de Nicaragua. La temperatura en las localidades del estudio oscila entre 18 y 212 C. Las mayores precipitaciones se registran de junio a noviembre y la menor de diciembre a febrero. Los niveles máximos de infestación de broca oscilaron entre 0.5 y 1.55% de frutos brocados encontrandose mayores niveles en las menores alturas donde se observa que el incremento de la población ocurre entre los 107 y 246 días después de la floración principal (ddfp). En las alturas superiores a 1000 m.s.n.m las infestaciones comienzan incrementarse en fechas tardías (141 ddfp). Sin embargo, dichos niveles decrecen al momento de la cosecha. El desarrollo de los diferentes estadíos de H. hampei resultó diferentes en las localidades estudiadas. La producción de huevos se inicia más temprano en las zonas de menor altitude (78 ddfp) en comparación con zonas de mayor altitud (141 ddfp). Las poblaciones de huevos, larvas y pupas aumentan posteriormente con al número de adultos, alcanzando los máximos valores durante la maduración del fruto y disminuyendo al momento final de la cosecha. H. hampei se reproduce en frutos semiconsistentes, consistentes y maduros, sin embargo, se puede encontrar adultos de broca en los canales de penetración en los frutos en estado lechoso.

Determinacion de la relacion entre la satisfaccion hidrica y los rendimientos del maiz (Zea mays L.) en la cuarta region

El presente trabajo de investigación se llevó a cabo en la IV región del pais con el fin de obtener una relación entre los diferentes grados de abastecimiento hídrico y los rendimientos del cultivo del maiz, variedad NB-6, para asi poder dar un mejor uso de los recursos hidricos (en nuestro caso las precipitaciones) mediante la determinación de fechas de siembra con el menor riesgo posible de pérdidas económicas. Nos encontramos con la limitante de trabajar con un número no muy grande de muestras debido a perdida de información (registros incompletos) y además de trabajar con solamente un ciclo de producción disminuyendo esto la variabilidad de los datos. Se logró validar efectivamente un modelo de balance hidríco para las condiciones especificas del año en estudio < 1989) y se encontró una relación clara, aunque no rígida, entre el indice de satisfacción hidrica del cultivo y los rendimientos obtenidos en ese año. Sin embargo, se recomienda utilizar modelos mas precisos para este tipo de investigación y repetirlo sobre una serie mayor de años. Por ahora, solo contamos con esta relación obtenida y de utilización reservada.

Defensa de la vida física del paciente en estado terminal : entre la dignidad y la autonomía

Resumen: Proponemos un análisis crítico de los fundamentos que sustentan la llamada “Ley de Muerte Digna” incorporada en la Ley que consagra la regulación de los derechos del paciente, historia clínica, consentimiento informado, (Art. 2º, inc. “e” párr. 2º de la Ley 26.529 modificada por la Ley 26.742), que introduce en nuestro país la existencia real de un sistema eutanásico formal sin fundamentos de orden científico, éticos e incluso jurídicos. ¿Es moralmente lícito suprimir la vida del enfermo terminal?, ¿la legalización de esta práctica eutanásica es la primera piedra de una nueva “cultura” de la vida? Entendemos que la llamada “tesis de la autonomía”, fundante de la reforma legislativa en cuestión, desde una óptica Bioética personalista, merece serias objeciones bioéticas ya que puede distorsionar gravemente el ejercicio de la medicina y la relación médico paciente.

A generalized wave action conservative equation for the dissipative dynamical system in the nearshore region

To describe the various complex mechanisms of the dissipative dynamical system between waves, currents, and bottoms in the nearshore region that induce typically the wave motion on large-scale variation of ambient currents, a generalized wave action equation for the dissipative dynamical system in the nearshore region is developed by using the mean-flow equations based on the Navier-Stokes equations of viscous fluid, thus raising two new concepts: the vertical velocity wave action and the dissipative wave action, extending the classical concept, wave action, from the ideal averaged flow conservative system into the real averaged flow dissipative system (that is, the generalized conservative system). It will have more applications.

The MBA-LBA I period in the Kourion region : new evidences from Erimi- Laonin tou Porakou (Lemesos, Cyprus)

The evidence from Erimi-Laonin tou Porakou within the Kouris valley settlement system can offer further new data to outline a picture of the development trends from MBA to LBA I periods in the Kourion region. As to this area, such a “transitional” phase could be particularly relevant to better understand the development process of the mature LBA II–III urban centers (in Alassa as well as the most recent discovered in Erimi-Pitharka). In 2008–2009 a focus investigation (an intensive survey, geoperspections and excavations) within the Kouris Valley Project has been addressed to the site of Erimi-Laonin tou Porakou, which lies on one of the highest hilltops facing southward the Kouris dam. The excavations evidenced a double circuit wall which surrounds the top mound and the lower terrace. The top mound (Area A) has been widely occupied by a complex workshop, directly linked with a storage area. The natural limestone bedrock has been worked out to arrange a system of carved deep basins connected each other by a series of flow channels. Southward from the workshop, a large storage area has been cleared, with a relevant assemblage of big pithoi and storage devices. The first lower terrace area (Area B) has been possibly occupied by a domestic quarter; a cemetery area (Area E) has been also evidenced outside the external circuit wall, where a series of five rock-cut tombs (Tombs 228– 232) with single chamber and small incoming dromoi has been excavated.

Estatuto antropológico de la enfermedad y el dolor en el enfermo terminal

Resumen: Los conceptos de dolor, enfermedad y enfermedad terminal exceden plenamente el ámbito meramente biológico y solo pueden abordarse acabadamente desde una perspectiva hilemorfista de persona humana. El enfoque integral de estos conceptos permite descubrir un significado antropológico de los mismos. Su comprensión adecuada constituye un imperativo moral en el cuidado del paciente terminal. En este sentido, es posible rescatar el valor de los cuidados paliativos como una modalidad de atención integral del paciente. En este contexto surge el proyecto de la Casa de la Bondad Salta, que pertenece a la Fundación Manos Abiertas. La Casa de la Bondad tiene como objetivo implementar cuidados paliativos a enfermos terminales. Se parte de la necesidad de realizar un abordaje integral del enfermo desde un enfoque transdisciplinar.