Global Genomic Diversity of Human Papillomavirus 6 Based on 724 Isolates and 190 Complete Genome Sequences.

Human papillomavirus type 6 (HPV6) is the major etiological agent of anogenital warts and laryngeal papillomas and has been included in both the quadrivalent and nonavalent prophylactic HPV vaccines. This study investigated the global genomic diversity of HPV6, using 724 isolates and 190 complete genomes from six continents, and the association of HPV6 genomic variants with geographical location, anatomical site of infection/disease, and gender. Initially, a 2,800-bp E5a-E5b-L1-LCR fragment was sequenced from 492/530 (92.8%) HPV6-positive samples collected for this study. Among them, 130 exhibited at least one single nucleotide polymorphism (SNP), indel, or amino acid change in the E5a-E5b-L1-LCR fragment and were sequenced in full. A global alignment and maximum likelihood tree of 190 complete HPV6 genomes (130 fully sequenced in this study and 60 obtained from sequence repositories) revealed two variant lineages, A and B, and five B sublineages: B1, B2, B3, B4, and B5. HPV6 (sub)lineage-specific SNPs and a 960-bp representative region for whole-genome-based phylogenetic clustering within the L2 open reading frame were identified. Multivariate logistic regression analysis revealed that lineage B predominated globally. Sublineage B3 was more common in Africa and North and South America, and lineage A was more common in Asia. Sublineages B1 and B3 were associated with anogenital infections, indicating a potential lesion-specific predilection of some HPV6 sublineages. Females had higher odds for infection with sublineage B3 than males. In conclusion, a global HPV6 phylogenetic analysis revealed the existence of two variant lineages and five sublineages, showing some degree of ethnogeographic, gender, and/or disease predilection in their distribution. IMPORTANCE: This study established the largest database of globally circulating HPV6 genomic variants and contributed a total of 130 new, complete HPV6 genome sequences to available sequence repositories. Two HPV6 variant lineages and five sublineages were identified and showed some degree of association with geographical location, anatomical site of infection/disease, and/or gender. We additionally identified several HPV6 lineage- and sublineage-specific SNPs to facilitate the identification of HPV6 variants and determined a representative region within the L2 gene that is suitable for HPV6 whole-genome-based phylogenetic analysis. This study complements and significantly expands the current knowledge of HPV6 genetic diversity and forms a comprehensive basis for future epidemiological, evolutionary, functional, pathogenicity, vaccination, and molecular assay development studies.

Polypes et cancers colo-rectaux par sous-localisation: données épidémiologiques genevoises et vaudoises [Colorectal polyps and cancers by sub-site: epidemiologic findings in Geneva and Vaud].

The present study is a comparative analysis of the adenomatous polyps and colorectal cancers, registered during a determined period within the population of the cantons of Geneva and Vaud. The analysis is particularly based on the polyp/cancer ratio by sub-site. Histological type as well as age and sex of the patient are taken into consideration.

Long-range transport of Saharan dust to northern Europe: The 11-16 October 2001 outbreak observed with EARLINET

The spread of mineral particles over southwestern, western, and central Europeresulting from a strong Saharan dust outbreak in October 2001 was observed at10 stations of the European Aerosol Research Lidar Network (EARLINET). For the firsttime, an optically dense desert dust plume over Europe was characterized coherentlywith high vertical resolution on a continental scale. The main layer was located abovethe boundary layer (above 1-km height above sea level (asl)) up to 3–5-km height, andtraces of dust particles reached heights of 7–8 km. The particle optical depth typicallyranged from 0.1 to 0.5 above 1-km height asl at the wavelength of 532 nm, andmaximum values close to 0.8 were found over northern Germany. The lidar observationsare in qualitative agreement with values of optical depth derived from Total OzoneMapping Spectrometer (TOMS) data. Ten-day backward trajectories clearly indicated theSahara as the source region of the particles and revealed that the dust layer observed,e.g., over Belsk, Poland, crossed the EARLINET site Aberystwyth, UK, and southernScandinavia 24–48 hours before. Lidar-derived particle depolarization ratios,backscatter- and extinction-related A ° ngstro¨m exponents, and extinction-to-backscatterratios mainly ranged from 15 to 25%, 0.5 to 0.5, and 40–80 sr, respectively, within thelofted dust plumes. A few atmospheric model calculations are presented showing the dustconcentration over Europe. The simulations were found to be consistent with thenetwork observations.

1.° M. T. Ciceronis de oratore libri tres ad Quintum fratrem : sub finem tertii nonnulla desiderantur. — 2.° Luc. Ann. Flori historiae Romanae epitome. — 3.° Titi Livii historiarum periochae, sive summaria. — 4.° Caii Plinii Secundi historiae naturalis liber primus : sub finem nonnulla desiderantur. — 5.° Probae Falconiae versus litteris Longobardicis. — Is codex, si Falconiae versiculos excipias, decimo tertio saeculo videtur exaratus.

Puteanus

Old ferricrete landscape dismantling in Central Africa rain forest zone: formation of the present downslope iron accumulations.

Present downslope iron accumulations were investigated in the rainforest zone in southern Cameroon. Six clay and Fe-hydroxide dominated patterns have been identified and occur on the lower part of hill slopes. They can be subdivided in three different sequences, related to gentle, moderate or steep slopes. They are discontinuous with respect to the dismantling zone of the old ferricrete cap formed at Cretaceous period. They show a gradual development from a soft Fe-crust (carapace) to a vesicular facies that will, with time, cover the whole landscape again.

CD4(+) T cell count decreases by ethnicity among untreated patients with HIV infection in South Africa and Switzerland.

BACKGROUND: Estimates of the decrease in CD4(+) cell counts in untreated patients with human immunodeficiency virus (HIV) infection are important for patient care and public health. We analyzed CD4(+) cell count decreases in the Cape Town AIDS Cohort and the Swiss HIV Cohort Study. METHODS: We used mixed-effects models and joint models that allowed for the correlation between CD4(+) cell count decreases and survival and stratified analyses by the initial cell count (50-199, 200-349, 350-499, and 500-750 cells/microL). Results are presented as the mean decrease in CD4(+) cell count with 95% confidence intervals (CIs) during the first year after the initial CD4(+) cell count. RESULTS: A total of 784 South African (629 nonwhite) and 2030 Swiss (218 nonwhite) patients with HIV infection contributed 13,388 CD4(+) cell counts. Decreases in CD4(+) cell count were steeper in white patients, patients with higher initial CD4(+) cell counts, and older patients. Decreases ranged from a mean of 38 cells/microL (95% CI, 24-54 cells/microL) in nonwhite patients from the Swiss HIV Cohort Study 15-39 years of age with an initial CD4(+) cell count of 200-349 cells/microL to a mean of 210 cells/microL (95% CI, 143-268 cells/microL) in white patients in the Cape Town AIDS Cohort > or =40 years of age with an initial CD4(+) cell count of 500-750 cells/microL. CONCLUSIONS: Among both patients from Switzerland and patients from South Africa, CD4(+) cell count decreases were greater in white patients with HIV infection than they were in nonwhite patients with HIV infection.

Biodiversity study of arthropods collected on rat carrion in Yaounde, Cameroon: first study on forensic entomology in Central Africa

The first investigation of arthropods associated with carrion in Cameroon was carried out within the campus of the University of Yaounde I (Cameroon) from 17thJanuary to 3rd April 2008. Carcasses of rats (Rattus norvegicus Berkenhout, 1769 var WISTAR) were exposed to colonization by the local fauna of arthropods. The invading organisms were collected daily during the study period. 2287 individuals of arthropod belonging to 3 classes, 16 orders, 37 families and 7 subfamilies were identified. The insects assessed were mainly Diptera, Coleoptera and Acari. This study illustrates the high diversity of the necroentomofauna in Cameroon and provides an insight approximation into the succession pattern of invading insect and a weekly estimation of the time of death.

Aptidão para reflorestamento das sub-bacias dos canais do Mangue e do Cunha, município do Rio de Janeiro

Avaliou-se a aptidão para reflorestamento das terras das partes não edificadas da vertente norte do maciço da Tijuca, sub-bacias dos canais do Mangue e do Cunha, com o intuito de subsidiar ações do Programa Mutirão Reflorestamento da Secretaria Municipal de Meio Ambiente do Rio de Janeiro. A avaliação da aptidão das terras estimou graus de limitação dos parâmetros: deficiência de nutrientes, deficiência de água, susceptibilidade à erosão e impedimentos ao manejo. Estes graus de limitação foram estimados para os componentes das unidades de mapeamento de solos, considerando as informações de solos e paisagens do mapeamento existente. Para a digitalização e organização das informações geradas, foram utilizados sistemas de informações geográficas. As seguintes classes de aptidão para reflorestamento foram determinadas: 11,2 % de Regular, 81,5 % de Restrita e 7,3 % de Inapta. A declividade representa o fator limitante de maior importância para as terras da classe de aptidão restrita, seguida da presença de rochosidade.

Measures of health and disease in Africa: are current methods giving us useful information about trends in cardiovascular diseases?

An enormous burst of interest in the public health burden from chronic disease in Africa has emerged as a consequence of efforts to estimate global population health. Detailed estimates are now published for Africa as a whole and each country on the continent. These data have formed the basis for warnings about sharp increases in cardiovascular disease (CVD) in the coming decades. In this essay we briefly examine the trajectory of social development on the continent and its consequences for the epidemiology of CVD and potential control strategies. Since full vital registration has only been implemented in segments of South Africa and the island nations of Seychelles and Mauritius - formally part of WHO-AFRO - mortality data are extremely limited. Numerous sample surveys have been conducted but they often lack standardization or objective measures of health status. Trend data are even less informative. However, using the best quality data available, age-standardized trends in CVD are downward, and in the case of stroke, sharply so. While acknowledging that the extremely limited available data cannot be used as the basis for inference to the continent, we raise the concern that general estimates based on imputation to fill in the missing mortality tables may be even more misleading. No immediate remedies to this problem can be identified, however bilateral collaborative efforts to strength local educational institutions and governmental agencies rank as the highest priority for near term development.

Diabetische Neuropathien: Klinische Manifestationsformen, Früherkennung und Zuweisung zu einem Neurologen [Diabetic Neuropathies: Clinical sub-Types, Early Detection, and Asking Help from Neurologist].

In diabetes mellitus, it is expected to see a common, mainly sensitive, distal symmetrical polyneuropathy (DPN) involving a large proportion of diabetic patients according to known risk factors. Several other diabetic peripheral neuropathies are recognized, such as dysautonomia and multifocal neuropathies including lumbosacral radiculoplexus and oculomotor palsies. In this review, general aspects of DPN and other diabetic neuropathies are examined, and it is discussed why and how the general practionner has to perform a yearly examination. At the present time, some consensuses emerge to ask help from neurologist when faced to other forms of peripheral neuropathies than distal symmetrical DPN.

Simulação da variabilidade espacial da erosão hídrica em uma sub-bacia hidrográfica de Latossolos no sul de Minas Gerais

A simulação da distribuição espacial da erosão do solo consiste em uma ferramenta poderosa para o planejamento conservacionista em bacias hidrográficas, sendo uma importante aplicação da Equação Universal de Perdas de Solo (EUPS) associada a princípios de interpolação espacial, principalmente a geoestatística. Este trabalho objetivou simular a distribuição espacial da erosão hídrica numa sub-bacia hidrográfica da região do Alto Rio Grande (MG), aplicando ferramentas geoestatísticas para distribuição espacial e mapeamento. Diferentes cenários de uso do solo foram analisados. A erosão foi estimada com base na EUPS aplicada a células, considerando as unidades pedológicas e diferentes usos em cada célula. O fator topográfico (LS) das células foi obtido com base no Modelo Digital de Elevação da sub-bacia, identificando comprimento e direção principal do escoamento. A erosividade média anual da região é de 8.030 MJ mm ha-1 h-1 ano-1, e a erodibilidade dos solos foi extraída da literatura. A EUPS foi aplicada a cada célula, levando-se em conta a situação atual do solo, áreas degradadas plantadas com eucalipto, pastagem plantada e plantio convencional de milho, considerando a ocupação de toda a sub-bacia hidrográfica. Na situação atual, a sub-bacia apresenta taxas de erosão inferiores aos limites de tolerância para os respectivos solos, com exceção das áreas degradadas ocupadas por eucalipto e pastagem em Cambissolo. No entanto, em todas as situações analisadas, seu lado leste apresentou as maiores perdas de solo, especialmente para os cenários de eucalipto nas condições atuais e plantio convencional de milho em Cambissolo e Latossolo Vermelho-Amarelo, sendo necessária a aplicação de técnicas conservacionistas.

Reliure de : Notitia utraque cum Orientis tum Occidentis ultra Arcadii Honoriique Caesarum tempora... Praecedit autem D. Andreae Alciati libellus De magistratib. civilibusque ac militaribus officiis... Cui succedit descriptio urbis Romae quae sub titulo Pub. Victoris circumfertur, et altera urbis Constantinopolitanae incerto auctore, nunquam antequam typis excusa... Subjungitur Notitiis vetustus liber de rebus bellicis ad Theodosium Aug. et filios ejus Arcadium atque Honorium, ut videtur, scriptus, incerto autore. Item... Disputatio Adriani Aug. et Epicteti philosophi

[Notitia dignitatum omnium tam civilium quam militarium (latin). 1552]

Calibração de modelo para a simulação de vazão e de fósforo total nas sub-bacias dos Rios Conrado e Pinheiro - Pato Branco (PR)

O desenvolvimento de modelos hidrológicos capazes de predizer o impacto de fontes difusas de poluição e do uso e ocupação do solo na qualidade das águas superficiais e subterrâneas tem auxiliado o estudo de agroecossistemas. Com esse objetivo, foi utilizado o modelo SWAT 2005 (Soil and Water Assessment Tool) para avaliar sua sensibilidade na predição da vazão e do fluxo de massa do P total. O estudo foi realizado em duas microbacias hidrográficas contíguas, dos rios Conrado e Pinheiro, afluentes do rio Pato Branco, localizadas nos municípios de Pato Branco e Mariópolis, no Estado do Paraná. Foram utilizados dados climatológicos do período 1979/2006 e dados observados de vazão e concentração de P total dos anos 2004/2005 de duas estações de monitoramento, localizadas na parte inferior do curso principal dos rios Conrado e Pinheiro. Utilizou-se a interface AvSWAT-X, com o SIG ArcView 3.3® e a extensão Spatial Analyst 2.0®, para entrada e manipulação dos dados. As médias anuais e mensais observadas de vazão e P total foram comparadas aos dados simulados. O Coeficiente de Eficiência de Nash-Sutcliffe (COE) foi utilizado para avaliar a eficiência do modelo. A modelagem foi melhorada com a associação de análise de sensibilidade, autocalibração e calibração manual, verificando-se que, com frequência de amostragem regular, o modelo SWAT 2005 realizou de forma aceitável as simulações de vazão e de exportação de P total. Já com frequência de amostragem irregular e pequeno número de dados, os procedimentos de análise de sensibilidade e de autocalibração não foram eficientes na calibração do modelo SWAT 2005 para a simulação de vazão e exportação de P total. Foram encontrados diferentes níveis de sensibilidade entre as duas estações, refletindo as desigualdades entre as Unidades de Resposta Hidrológica. A distribuição mensal simulada das exportações de P mostrou a heterogeneidade da aplicação do nutriente ao longo do ano.