Efeito de armadilha das passagens em grelha sobre os anfíbios

As passagens em grelha são infra-estruturas largamente utilizadas para impedir a deslocação do gado, mas que permitem a circulação de viaturas. Porém, também resultam numa armadilha de fosso onde pequenos animais terrestres podem cair inadvertidamente. O principal objectivo deste estudo foi verificar o efeito que as passagens em grelha têm sobre as populações de anfíbios, aquando das suas deslocações sazonais. Estudaram-se 18 passagens em grelha localizadas em duas zonas de amostragem - Elvas e Alandroal - no Alto Alentejo (Portugal). Esta investigação revelou que a principal espécie encarcerada nestas infra-estruturas é o sapo-de-unha-negra (Pelobates cultripes). Em termos gerais, os anfíbios mais terrestres são significativamente (teste do x2) mais afectados do que os anfíbios marcadamente aquáticos. O teste de Mantel mostrou que não existe correlação entre o tipo de passagem em grelha e os anfíbios encontrados nessas infra-estruturas. Para mitigar o aprisionamento de anfíbios nas passagens em grelha, são propostas cinco medidas. ABSTRACT; Cattle grids are infrastructures widely used to avoid the movement of cattle along a road, though allowing the circulation of vehicles. However, they also result in a pit trap where small terrestrial animals may inadvertently fall. The main objective of this study was to check the effect that cattle grids have on amphibian populations, during their seasonal migrations. 18 cattle grids, located in two sampling zones - Elvas and Alandroal- in Alto Alentejo (Portugal), were studied. This investigation showed that the main species imprisoned in these devices is the iberian spadefoot toad (Pelobates cultripes). Generally, the more terrestrial amphibians are significantly (x2 test) more affected than markedly aquatic amphibians. Mantel test showed that there is no correlation between different kinds of cattle grids and the amphibians found in these infrastructures. To mitigate the imprisonment of amphibians in cattle grids, five measures are proposed.

Estudo da mortalidade de anfíbios em duas estradas rurais próximas: efeito do tráfego rodoviário

As rodovias podem contribuir para a diminuição de populações de anfíbios de várias formas, sendo a mais visível a mortalidade por atropelamento. Neste trabalho procurou-se observar a forma como o tráfego pode afectar a mortalidade de anfíbios. A recolha de dados foi efectuada em duas estradas rurais próximas onde foram registadas as espécies observadas e se estas estavam vivas ou mortas, entre outros. Os resultados comprovaram não haver diferenças significativas em relação ao número de indivíduos ou à proporção das espécies que atravessam as vias e confirmaram que uma das estradas possui uma percentagem de mortalidade muito superior à outra. Os testes estatísticos também revelaram existir uma diferença significativa entre o tráfego nas duas estradas. Desta forma, na estrada com mais trânsito foi observado um número muito superior de mortos. Foi, portanto, possível relacionar os resultados e concluir que os anfíbios são negativamente afectados pela intensidade do trânsito rodoviário. ABSTRACT; The roads can contribute to the amphibian populations decline in many ways, being the most visible the roadkills. The purpose of this study was to observe how the traffic can affect the amphibian mortality. The data collection was conducted in two rural roads, near to each other, where the species observed were recorded, and if they were alive or dead, among other information. The results showed no significant differences in the number of individual or in the proportion of species that cross the roads and confirmed that one of the road has a much higher mortality percentage than the other. Statistical tests also revealed a significant difference between the traffic of the two roads. Thus, on the road with more traffic was observed a much higher number of deaths. It was therefore possible to relate the results and conclude that the amphibians are negatively affected by the traffic intensity.

Community- and population-level effects of chytridiomycosis in a Neotropical amphibian community

As the number of fungal pathogen outbreaks become more frequent worldwide across taxa, so have the number of species extirpations and communities persisting with the pathogen. This phenomenon raises questions, such as: “what leads to host extinction during an outbreak?” and “how are hosts persisting once the pathogen establishes?.” But the data on host populations and communities across life stages before and after pathogen arrival rarely exist to answer these questions. Over the past three to four decades, the amphibian-killing fungus Batrachochytrim dendrobatidis (Bd) spread in a wave-like manner across Central America, leading to rapid species extirpations and population declines. I collected data on tadpole and adult amphibians in El Copé, Panama before, during, and after the Bd outbreak to answer these questions. I used Bayesian statistical approaches to account for imperfect host and pathogen detection of marked and unmarked individuals. In the tadpole community, within 11 months of Bds arrival, density and occupancy rapidly declined. Species losses were phylogenetically correlated, with glass frogs disappearing first, and tree frogs and poison-dart frogs remaining. I found that tadpole communities resembled one another more strongly after the outbreak than they did before Bd invasion. I found no tadpoles within 22 months of the outbreak and limited signs of recovery within 10 years. In contrast, at the same site, for a population of male glass frogs, Espadarana prosopleon, I found that 10 years post-outbreak, the population was consistently half its historic abundance, and that the lack of recruits to the population explained why the population had not rebounded, rather than high pathogen-induced mortality. And finally, examining the entire amphibian community, I found high pathogen prevalence, low infection intensities, and high survival rates of uninfected and infected hosts. Bd transmission risk, i.e., the probability a susceptible host becomes infected, did not relate to host density, pathogen prevalence, or infection intensity– Bd transmission risk was uniform across the study area. My results are especially relevant to conservation biologists aiming to predict the future impacts of Bd outbreaks, those trying to manage persisting populations, and those interested in reintroducing species back into wild amphibian communities.

Comércio de répteis exóticos: as suas implicações para a conservação da natureza

O comércio de espécies selvagens tem crescido bastante ao longo das últimas décadas. Atualmente é considerado o quarto maior tráfico ilegal no mundo, logo seguido da transação de drogas, de armas e de humanos. Estima-se que o comércio de espécies selvagens pode ultrapassar os 12 milhões de euros por ano na UE. Abrange tanto as plantas como os animais vivos; mas, nestes últimos, incluem-se também os seus derivados, tais como sejam as peles, os ossos, alimento, entre outros. O uso das espécies selvagens é bastante vastos, as espécies são utilizadas para alimentação, uso medicinal, investigação científica, comércio de peles, alimentação e o mais comum é para animais de estimação. As espécies exóticas muitas vezes tornam-se espécies exóticas invasoras, começam a ser um perigo para a biodiversidade e para as espécies nativas. O processo de invasão apresenta-se por quatro fases: dispersão ou transporte, estabelecimento, naturalização e por fim dispersão geográfica e/ou invasão. Vários são os mecanismos para combater as espécies exóticas invasoras, sendo que o mecanismo mais radical a erradicação de espécimes. Em Lisboa, estão descritas três espécies exóticas invasoras: a tartaruga da Florida Trachemys scripta, a tartaruga de Nelson Pseudemys nelsoni e a tartaruga corcunda do Mississipi Graptemys pseudogeographica; ABSTRACT: The wildlife trade is growing fast over the last decades. It is now considered the fourth largest illegal trade in the world, followed by the drugs, weapons and humans. It is estimated that trade with species can exceed 12 million € per year in the EU. This trade comprises plants or live animals; but also is derivatives, such as skins, bones, food, and others. The use of wildlife is diverse, can be for food, medical, scientific research, trade of skins, but the most common is for pets. Alien species can become invasive alien species and so they become a threat to biodiversity and for native species. The process of invasion has four phases: dispersion or transport, establishment, naturalization and geographic dispersion and/or invasion. There are several mechanisms to combat such invasive alien species: the most radical mechanism is eradication of specimens. In Lisbon, are described three invasive alien species: the red-eared slider turtle Trachemys Florida, the Florida red-bellied turtle Pseudemys nelsoni and the false map turtle Graptemys psedogeographica.

Evaluación de los problemas dermatológicos de origen infeccioso no viral de las tortugas hicoteas (Trachemys sp.) del Zoológico Jaime Duque

Tesis (Médico Veterinario). -- Universidad de La Salle. Facultad de Ciencias Agropecuarias. Programa de Medicina Veterinaria, 2014

Síntese química e avaliação das propriedades antibacterianas e antiparasitárias de análogos de peptídeos antimicrobianos de anuros

Tese (doutorado)—Universidade de Brasília, Instituto de Ciências Biológicas, Programa de Pós-Graduação em Biologia Molecular, 2015.

Crystallization, preliminary X-ray analysis and molecular-replacement solution of haemoglobin-II from the fish matrinxa (Brycon cephalus)

Haemoglobins constitute a set of proteins with interesting structural and functional properties, especially when the two large animal groups reptiles and fishes are focused on. Here, the crystallization and preliminary X-ray analysis of haemoglobin-II from the South American fish matrinxa (Brycon cephalus) is reported. X-ray diffraction data have been collected to 3.0 Angstrom resolution using synchrotron radiation (LNLS). Crystals were determined to belong to space group P2(1) and preliminary structural analysis revealed the presence of two tetramers in the asymmetric unit. The structure was determined using the standard molecular-replacement technique.

Identification of Hotspots in the European Union for the Introduction of Four Zoonotic Arboviroses by Live Animal Trade

Live animal trade is considered a major mode of introduction of viruses from enzootic foci into disease-free areas. Due to societal and behavioural changes, some wild animal species may nowadays be considered as pet species. The species diversity of animals involved in international trade is thus increasing. This could benefit pathogens that have a broad host range such as arboviruses. The objective of this study was to analyze the risk posed by live animal imports for the introduction, in the European Union (EU), of four arboviruses that affect human and horses: Eastern and Western equine encephalomyelitis, Venezuelan equine encephalitis and Japanese encephalitis. Importation data for a five-years period (2005-2009, extracted from the EU TRACES database), environmental data (used as a proxy for the presence of vectors) and horses and human population density data (impacting the occurrence of clinical cases) were combined to derive spatially explicit risk indicators for virus introduction and for the potential consequences of such introductions. Results showed the existence of hotspots where the introduction risk was the highest in Belgium, in the Netherlands and in the north of Italy. This risk was higher for Eastern equine encephalomyelitis (EEE) than for the three other diseases. It was mainly attributed to exotic pet species such as rodents, reptiles or cage birds, imported in small-sized containments from a wide variety of geographic origins. The increasing species and origin diversity of these animals may have in the future a strong impact on the risk of introduction of arboviruses in the EU.

An experimental study of gill net and trammel net 'ghost fishing' off the Algarve (southern Portugal)

Four 100 m lengths of both monofilament gill nets and trammel nets were deployed at depths between 15 and 18 m off the coast of the Algarve (south of Portugal) between April 1995 and June 1996. The nets were set on a natural rocky bottom with one end cut loose to simulate lost nets. Changes in net structure (net height, effective fishing area, movement, colonisation, wear and tear) and their catches (species, sizes, numbers, and biomass) were monitored by divers. Similar patterns were observed in all the nets, with a sharp decrease in net height and effective fishing area, and an increase in visibility within the first few weeks. Net movement was negligible except in the case of interference from other fishing gears. Catch rates were initially comparable to normally fished gill nets and trammel nets in this area, but decreased steadily over time. No sea birds, reptiles or mammals were caught in any of the 8 nets. Catches were dominated by fish (89 % by number, at least 27 species), in particular by sea breams (Sparidae) and wrasses (Labridae). Under the conditions experienced throughout the study the fishing Lifetime of a 'lost' net is between 15 and 20 wk. Based on an exponential model, we estimated that 100 m lengths of gill net and trammel net will catch 314 and 221 fish respectively over a 17 wk period. However, we consider this to be an underestimate due to high rates of predation and scavenging by octopuses, cuttlefish, moray eels, conger eels, and other fish such as the wrasse Coris julis. When the nets were surveyed in the following spring, 8 to 11 mo after being deployed, they were found to be completely destroyed or heavily colonised by algae and had become incorporated into the reef.

Distinguishing the distributions of two cryptic frogs (Anura: Discoglossidae) using molecular data and environmental modeling

Currently, the identification of two cryptic Iberian amphibians, Discoglossus galganoi Capula, Nascetti, Lanza, Bullini and Crespo, 1985 and Discoglossus jeanneae Busack, 1986, relies on molecular characterization. To provide a means to discern the distributions of these species, we used 385-base-pair sequences of the cytochrome b gene to identify 54 Spanish populations of Discoglossus. These data and a series of environmental variables were used to build up a logistic regression model capable of probabilistically designating a specimen of Discoglossus found in any Universal Transverse Mercator (UTM) grid cell of 10 km × 10 km to one of the two species. Western longitudes, wide river basins, and semipermeable (mainly siliceous) and sandstone substrates favored the presence of D. galganoi, while eastern longitudes, mountainous areas, severe floodings, and impermeable (mainly clay) or basic (limestone and gypsum) substrates favored D. jeanneae. Fifteen percent of the UTM cells were predicted to be shared by both species, whereas 51% were clearly in favor of D. galganoi and 34% were in favor of D. jeanneae, considering odds of 4:1. These results suggest that these two species have parapatric distributions and allow for preliminary identification of potential secondary contact areas. The method applied here can be generalized and used for other geographic problems posed by cryptic species.

Assessing the conservation status of Mediterranean temporary ponds using biodiversity: a new tool for practitioners

The assessment of the habitat condition is the first step of conservation actions and several tools are available to assess wetlands. However, only a few tools are adapted to the priority habitat Mediterranean temporary ponds. Thus, our objectives were (i) to identify biological indicators associated with the different conservation status of Mediterranean tem- porary ponds and (ii) to create an efficient evaluation tool for non-experts using indicators of conservation status. A total of 87 ponds were sampled in southwest Portugal to assess the presence of plants, large branchiopods, amphibians, threatened voles and bats. Ponds with favourable conservation status showed higher species richness of plants, large branchiopods and amphibians. We identified eighteen indicators for favourable ponds: 15 plants, one large branchiopod and two amphibian taxa. We propose a new tool to assess the conservation status of Mediterranean tem- porary ponds based on the presence of these indicators. This tool is an alternative to other common, but time- consuming, methods and can be readily used by trained practitioners. The replication and adaptation of this tool to other regions and habitats enables the collection of comparable data and the geographical scaling-up of the assessments.

Clínica de animais exóticos

Este relatório de estágio descreve as atividades desenvolvidas no estágio curricular e desenvolve o tema ―Inseminação artificial em Python regius‖. O estágio de seis meses foi realizado na Exoclinic – clínica veterinária de aves e exóticos, permitindo consolidar conhecimentos através da prática clínica e agregar-lhes a área da medicina de animais exóticos, dedicando especial atenção à medicina de répteis. Desenvolvem-se os casos mais frequentes: medicina preventiva nas várias classes de animais, patologia dentária em roedores e lagomorfos, doença do bico e das penas dos psitacídeos e anorexia em répteis. Na monografia aborda-se a anatomofisiologia e o comportamento reprodutivos das cobras e a sua influência no maneio reprodutivo em cativeiro, métodos de avaliação de reprodutores e técnicas de inseminação artificial. Realizou-se um ensaio prático com seis animais, realizando colheitas de sémen, avaliação de alguns parâmetros do sémen, controlo folicular por ecografia e inseminação artificial. Apresentam-se os métodos, os resultados e respetiva discussão; Abstract: Exotic animal medicine This traineeship report describes the activities during the traineeship and develops the theme "Artificial insemination in Python regius." The six-month internship was held in Exoclinic - clínica veterinária de aves e exóticos, consolidating knowledge through clinical practice and adding the medical field of exotic animals, with special attention to reptiles. The most frequent clinical cases are developed: preventive medicine in the various classes of animals, dental pathology in rodents and lagomorphs, Psittacine Beak and Feather Disease in birds and anorexia in reptile. The monograph addresses the anatomy, physiology and reproductive behavior of snakes and their influence on reproductive management in captivity, methods for reproductors selection and evaluation and artificial insemination techniques. Implementation of a field trial with six animals, performing semen crops and evaluation of some of its parameters, follicular monitoring by ultrasound and artificial insemination. Methods and results are presented and discussed.

Assessing the conservation status of Mediterranean temporary ponds using biodiversity: a new tool for practitioners

The assessment of the habitat condition is the first step of conservation actions and several tools are available to assess wetlands. However, only a few tools are adapted to the priority habitat Mediterranean temporary ponds. Thus, our objectives were (i) to identify biological indicators associated with the different conservation status of Mediterranean temporary ponds and (ii) to create an efficient evaluation tool for non-experts using indicators of conservation status. A total of 87 ponds were sampled in southwest Portugal to assess the presence of plants, large branchiopods, amphibians, threatened voles and bats. Ponds with favourable conservation status showed higher species richness of plants, large branchiopods and amphibians. We identified eighteen indicators for favourable ponds: 15 plants, one large branchiopod and two amphibian taxa. We propose a new tool to assess the conservation status of Mediterranean temporary ponds based on the presence of these indicators. This tool is an alternative to other common, but time consuming, methods and can be readily used by trained practitioners. The replication and adaptation of this tool to other regions and habitats enables the collection of comparable data and the geographical scaling-up of the assessments.

The red swamp crayfish Procambarus clarkii in Europe: Impacts on aquatic ecosystems and human well-being

Procambarus clarkii is currently recorded from 16 European territories. On top of being a vector of crayfish plague, which is responsible for large-scale disappearance of native crayfish species, it causes severe impacts on diverse aquatic ecosystems, due to its rapid life cycle, dispersal capacities, burrowing activities and high population densities. The species has even been recently discovered in caves. This invasive crayfish is a polytrophic keystone species that can exert multiple pressures on ecosystems. Most studies deal with the decline of macrophytes and predation on several species (amphibians, molluscs, and macroinvertebrates), highlighting how this biodiversity loss leads to unbalanced food chains. At a management level, the species is considered as (a) a devastating digger of the water drainage systems in southern and central Europe, (b) an agricultural pest in Mediterranean territories, consuming, for example, young rice plants, and (c) a threat to the restoration of water bodies in north-western Europe. Indeed, among the high-risk species, P. clarkii consistently attained the highest risk rating. Its negative impacts on ecosystem services were evaluated. These may include the loss of provisioning services such as reductions in valued edible native species of regulatory and supporting services, inducing wide changes in ecological communities and increased costs to agriculture and water management. Finally, cultural services may be lost. The species fulfils the criteria of the Article 4(3) of Regulation (EU) No 1143/2014 of the European Parliament (species widely spread in Europe and impossible to eradicate in a cost-effective manner) and has been included in the “Union List”. Particularly, awareness of the ornamental trade through the internet must be reinforced within the European Community and import and trade regulations should be imposed to reduce the availability of this high-risk species.

EVALUACIÓN ECOLÓGICA RÁPIDA DE UN ECOSISTEMA URBANO: EL CASO DE LA ICROCUENCA DEL RÍO PIRRO, HEREDIA, COSTA RICA.

Los sistemas naturales tienen un valor único e irrepetible en sí mismos, ya que son los hábitats de la fora y la fauna autóctonos, asimismo, los espacios libres o las zonas verdes en paisajes agropecua-rios o urbanos actúan como equilibradores de las disfunciones ecológicas que la actividad humana introduce. El modelo de crecimiento urbano implementado en las últimas décadas en la Gran Área Metropolitana de Costa Rica (GAM), carece de sensibilidad y responsabilidad ecológica y ambien-tal, así lo demuestran los resultados del estudio de caso de un pequeño territorio localizado dentro de la GAM, la microcuenca del río Pirro. De acuerdo con los resultados de la Evaluación Ecológica Rápida (EER), los ecosistemas urbanos presentes en el área de estudio se encuentran entre degra-dados y severamente degradados; desaparición completa del bosque natural ripario, así como del bosque húmedo y muy húmedo premontano, niveles severos de contaminación de  la calidad del agua superfcial, reducción en la biodiversidad de la fauna (aves, anfbios y reptiles) y alteraciones de la dinámica fuvial del río. Se requiere de estudios más profundos y de mayor temporalidad que permitan evaluar la resiliencia del ecosistema y las posibilidades de una recuperación a mediano y largo plazo. Es necesario además, un cambio en el modelo de desarrollo urbano tradicional, de tal manera que la planifcación territorial incorpore la variable ambiental en el ordenamiento, así como una cultura ambiental de responsabilidad con los ecosistemas naturales.