Molecular cloning, characterization and expression of heat shock protein 90 gene in the haemocytes of bay scallop Argopecten irradians

Heat shock protein 90 (HSP90) is a highly conserved molecular chaperone that plays key roles in the folding, maintenance of structural integrity and regulation of a subset of cytosolic proteins. In the present study, the cDNA of Argopecten irradians HSP90 (designated AiHSP90) was cloned by the combination of homology cloning and rapid amplification of cDNA ends (RACE) approaches. The full-length cDNA of AiHSP90 was of 2669 bp, including an open reading frame (ORF) of 2175 bp encoding a polypeptide of 724 amino acids with predicted molecular weight of 83.08 kDa and theoretical isoelectric point of 4.81. BLAST analysis revealed that AiHSP90 shared high similarity with other known HSP90s, and the five conserved amino acid blocks defined as HSP90 protein family signatures were also identified in AiHSP90, which indicated that AiHSP90 should be a cytosolic member of the HSP90 family. Fluorescent real-time quantitative PCR was employed to examine the expression pattern of AiHSP90 mRNA in haemocytes of scallops challenged by Gram-negative bacteria Vibrio anguillarum and Gram-positive bacteria Micrococcus luteus. In both bacterial challenged groups, the relative expression level of AiHSP90 transcript was up-regulated and reached maximal. level at 9 h after injection, and then dropped progressively to the original level at about 48 h post challenge. The results indicated that AiHSP90 was potentially involved in the immune responses against bacteria challenge in scallop A. irradian. (c) 2007 Elsevier Ltd. All rights reserved.

Broader pattern of tandem repeats in the mitochondrial control region of Perciformes

Perciformes, the largest order of vertebrates with 20 suborders, is the most diverse fish order that dominates vertebrate ocean life. The complete mitochondrial control region (CR) of Trichiurus japonicus (Trichiuridae, Scombroidei) and Pampus sp. (Stromateidae, Stromateoidei) were amplified and sequenced. Together with data from GenBank, the tandem repeats in the mitochondrial CR from 48 species, which covered nine suborders of Perciformes, are reported in this study. The tandem repeats tend to be long in the suborder Percoidei and Stromateoidei. The identical repeats in 21 species of Cichlidae suggest a common origin and have existed before species divergence. Larimichthys crocea shows tandem repeats instead of the typical structure of the central conserved sequence blocks, which was first reported in Perciformes and vertebrates. This might have resulted from interruption of the polymerase activity during the H-strand synthesis. The four broader patterns presented here for the tandem repeats, including those in both the 5' and 3' ends, only in the either 5' or 3' end, and in the central conserved domain of the control region, will be useful for understanding the evolution of species.

The complete mitochondrial genome of the mantid shrimp Oratosquilla oratoria (Crustacea: Malacostraca: Stomatopoda): Novel non-coding regions features and phylogenetic implications of the Stomatopoda

The complete mitochondrial (mt) genome sequence of Oratosquilla oratoria (Crustacea: Malacostraca: Stomatopoda) was determined; a circular molecule of 15,783 bp in length. The gene content and arrangement are consistent with the pancrustacean ground pattern. The mt control region of O. oratoria is characterized by no GA-block near the 3' end and different position of [TA(A)]n-blocks compared with other reported Stomatopoda species. The sequence of the second hairpin structure is relative conserved which suggests this region may be a synapomorphic character for the Stomatopoda. In addition, a relative large intergenic spacer (101 bp) with higher A + T content than that in control region was identified between the tRNA(Glu) and tRNA(Phe) genes. Phylogenetic analyses based on the current dataset of complete mt genomes strongly support the Stomatopoda is closely related to Euphausiacea. They in turn cluster with Penaeoidea and Caridea clades while other decapods form a separate group, which rejects the monophyly of Decapoda. This challenges the suitability of Stomatopoda as an outgroup of Decapoda in phylogenetic analyses. The basal position of Stomatopoda within Eumalacostraca according to the morphological characters is also questioned. (C) 2010 Elsevier Inc. All rights reserved.

Evolutionary analysis of phycobiliproteins: Implications for their structural and functional relationships

Phycobiliproteins, together with linker polypeptides and various chromophores, are basic building blocks of phycobilisomes, a supramolecular complex with a light-harvesting function in cyanobacteria and red algae. Previous studies suggest that the different types of phycobiliproteins and the linker polypeptides originated from the same ancestor. Here we retrieve the phycobilisome-related genes from the well-annotated and even unfinished cyanobacteria genomes and find that many sites with elevated d(N)/d(S) ratios in different phycobiliprotein lineages are located in the chromophore-binding domain and the helical hairpin domains (X and Y). Covariation analyses also reveal that these sites are significantly correlated, showing strong evidence of the functional-structural importance of interactions among these residues. The potential selective pressure driving the diversification of phycobiliproteins may be related to the phycobiliprotein-chromophore microenvironment formation and the subunits interaction. Sites and genes identified here would provide targets for further research on the structural-functional role of these residues and energy transfer through the chromophores.

Self-organized Criticality Model for Ocean Internal Waves

In this paper, we present a simple spring-block model for ocean internal waves based on the self-organized criticality (SOC). The oscillations of the water blocks in the model display power-law behavior with an exponent of -2 in the frequency domain, which is similar to the current and sea water temperature spectra in the actual ocean and the universal Garrett and Munk deep ocean internal wave model [Geophysical Fluid Dynamics 2(1972) 225; J. Geophys. REs. 80 (1975) 291]. The influence of the ratio of the driving force to the spring coefficient to SOC behaviors in the model is also discussed.

A new wind vector algorithm for C-band SAR

Ocean wind speed and wind direction are estimated simultaneously using the normalized radar cross sections or' corresponding to two neighboring (25-km) blocks, within a given synthetic aperture radar (SAR) image, having slightly different incidence angles. This method is motivated by the methodology used for scatterometer data. The wind direction ambiguity is removed by using the direction closest to that given by a buoy or some other source of information. We demonstrate this method with 11 EN-VISAT Advanced SAR sensor images of the Gulf of Mexico and coastal waters of the North Atlantic. Estimated wind vectors are compared with wind measurements from buoys and scatterometer data. We show that this method can surpass other methods in some cases, even those with insufficient visible wind-induced streaks in the SAR images, to extract wind vectors.

Nitrous oxide emissions from two alpine meadows in the Qinghai-Tibetan Plateau

Nitrous oxide (N2O) emission was measured in a Kobresia humilis meadow and a Potentilla fruticosa meadow in the Qinghai-Tibet Plateau from June 2003 to July 2006. Five treatments were setup in the two alpine meadows. Two bare soil treatments were setup in the K. humilis meadow (BSK) and in the P. fruticosa meadow (BSP) by removing the above- and belowground plant biomass. Three plant community treatments were setup with one in the K. humilis meadow (herbaceous community in the K. humilis meadow-HCK) and two in the P. fruticosa meadow (herbaceous community in the P. fruticosa meadow-HCP, and shrub community in the P. fruticosa meadow-SCP). Nitrous oxide emission from BSP was estimated to be 38.1 +/- 3.6 mu g m(-2) h(-1), significantly higher than from BSK (30.2 +/- 2.8 mu g m(-2) h(-1)) during the whole experiment period. Rates from the two herbaceous blocks (HCK and HCP) were close to 39.5 mu g m(-2) stop h(-1) during the whole experimental period whereas shrub community (SCP) showed significant high emission rates of N2O. Annual rate of N2O emission was estimated to be 356.7 +/- 8.3 and 295.0 +/- 11.6 mg m(-2) year(-1) from the alpine P. fruticosa meadow and from the alpine K. humilis meadow, respectively. These results suggest that alpine meadows in the Qinghai-Tibetan Plateau are an important source of N2O, contributing an average of 0.3 Tg N2O year(-1). We concluded that N2O emission will decrease, due to a predicted vegetation shift from shrubs to grasses imposed by overgrazing.

The effect of supplementary feeds on the bodyweight of yaks in cold season

The present study was conducted to determine the effects of supplementary feeds, oat hay (OH), highland barley straw (HBS) and multi-nutrient blocks supplementation (UMMB) on reducing liveweight losses of both yak cows and calves grazed on low quality pastures during cold season. The trials of OH and HBS supplementation were conducted by using completely random design on 104 yak cows between 6 and 12 years of age as the following treatments: pure grazing (41 animals, body weight 230 67 kg) as control (CK); grazing+1.5 kg DM of OH per head daily (30 animals, body weight 216 28 kg); gazing. 1.5 kg DM of HBS per head daily (33 animals, body weight 221 34 kg). The trial of UMMB was conducted on three types of yaks, 1-year calves (8-12 months old, body weight 61.1 6.9 kg), 2-year calves (18-24 months old, 98.0 11.3 kg) and yak cows (164.5 27.1 (S.D.) kg) with 20 animals in control group (CK) and 20 animals in supplement group for each type by using completely random design as the following treatments: pure grazing for CK group; grazing+ 150, 250 and 500 g UMMB per day averagely for 1-year calf, 2-year calf and cow at night. The results indicate that the animals supplemented with oat hay received body weight gain (32 20.7 g day(-1)), while those supplemented with highland barley straw still suffered from body weight loss (-56.7 39.3 a day(-1)); UMMB supplementation can decrease the body weight loss by 109.7%, 86.6% and 63.4% for the 1-year calves, 2-year calves and yak cows, respectively, as compared with pure grazing. Around US$1.60 output can be achieved on the basis of US$1 input for UMMB supplementation in the farming systems of the 1-year calves, 2-year calves and yak cows, while US$1 input can produce US$1.55 and 1.14 output for OH and FIBS supplementations, respectively, in yak cows' farming system. It can be preliminary concluded that UMMB supplementation was the most economic way to alleviate body weight loss of grazing yaks over cold season, and the higher productive returns were obtained from OH supplementation for grazing yak cows during winter/spring months. © 2004 Elsevier B.V All rights reserved.

Effect of urea multinutritional molasses block supplementation on liveweight change of yak calves and productive and reproductive performances of yak cows

Using three different types of yaks, 30 head of 1-yr-old calves (liveweight 60.7 +/- 6.3 kg), 30 head of 2-yr-old calves (97.7 +/- 10.2 kg) and 30 head of yak cows (160.2 +/- 15.1 kg) were randomly selected from the same yak herds. Each type of yak herd was divided into control (C) and trial (T) groups using a completely randomized design, with 10 and 20 animals in the C and T groups, respectively. The animals in the C group were grazed on natural rangeland, and the animals in the T group were supplemented with urea multinutritional molasses blocks (UMMB), together with grazing on natural rangeland from January to May of 1998. The objective was to determine the effect of UMMB on productive performance of yak calves and yak cows in the cold season. Live weight loss of 1-yr-old calves, 2-yr-old calves and yak cows was reduced by 1.2, 8.3 and 7.9 kg after UMMB supplementation (P < 0.01). The 1-yr-old calves gained the most in the first month of supplementation, but the 2-yr-old calves and yak cows gained the most both in the first and last supplementation months. Daily milk yield of yak cows increased by 0.21 kg d(-1) when the lactating animals were supplemented with UMMB (P < 0.01), although there was no effect (P < 0.01) of UMMB supplementation on hair and downy hair production. Supplementation with UMMB also improved reproductive performance of yak cows, with 8.8 and 30.9% increments in pregnancy rate and newborn weight, respectively. We conclude that the benefit of UMMB supplementation the 1-yr-old calves was not economical, with only 0.3:1 output to input ratio, but supplementation of the 2-yr-old calves and yak cows may be economical, with 1.8:1 and 1.4:1 output to input ratios, respectively.

VTI各向异性叠前深度偏移及速度分析

Theoretical research, laboratory test and field observation show that most of sediment rock has anisotropic features. It will produce some notable errors when applying isotropic methods such as prestack depth migration and velocity analysis to dada acquired under anisotropic condition; it also has a bad effect on geologic interpretation. Generally speaking, the vertical transverse isotropic media is a good approximation to geologic structure, thus it has an important realistic meaning for anisotropic prestack depth migration theory researching and precise complex geologic imaging if considering anisotropic effect of seismic wave propagation. There are two indispensable parts in prestack depth migration of realistic records, one is proper prestack depth migration algorithm, and the other is velocity analysis using prestack seismic data. The paper consists of the two aspects. Based on implicit finite difference research proposed by Dietrich Ristow et al （1997） about VTI media prestack depth migration, the paper proposed split-step Fourier prestack depth migration algorithm （VTISSF） and Fourier finite difference algorithm （VTIFFD） based on wave equation for VTI media, program are designed and the depth migration method are tested using synthetic model. The result shows that VTISSF is a stable algorithm, it generally gets a good result if the reflector dip is not very steep, while undermigration phenomena appeared in steep dips case; the VTIFFD algorithm bring us better result in steep dips with lower efficiency and frequency dispersion. For anisotropic prestack depth migration velocity analysis of VTI media, The paper discussed the basic hypothesis of VTI model in velocity analysis algorithm, basis of anisotropic prestack depth migration velocity analysis and travel time table calculation of VTI media in integral prestack depth migration. Then , analyzed the P-wave common imaging gather in the case of homogeneous velocity and vertically variable velocity . studied the residual correction in common imaging gather produced by media parameter error, analyzed the condition of flat event and correct depth in common imaging gather . In this case, the anisotropic model parameter vector is , is vertical velocity of a point at top surface, is vertical velocity gradient, and are anisotropic parameter. We can get vertical velocity gradient from seismic data; then the P-wave common imaging gather of VTI media whose velocity varies in vertical and horizontal direction, the relationship between media parameter and event residual time shift of common image gather are studied. We got the condition of flattening common imaging gather with correct depth. In this case the anisotropic model parameter vector is , is velocity gradient in horizontal direction. As a result, the vertical velocity grads can be decided uniquely, but horizontal velocity grads and anisotropic parameter can’t be distinguished if no priori information available, our method is to supply parameter by velocity scanning; then, as soon as is supplied we can get another four parameters of VTI media from seismic data. Based on above analysis, the paper discussed the feasibility of migration velocity analysis in vertically and horizontally varied VTI media, synthetic record of three models are used to test the velocity analysis method . Firstly, anisotropic velocity analysis test is done using a simple model with one block, then we used a model with multiple blocks, thirdly, we analyzed the anisotropic velocity using a part of Marmousi model. The model results show that this velocity analysis method is feasible and correct.

东濮凹陷低阻油层形成机理与评价方法研究

In order to effectively identify and accurately evaluate low resistivity reservoir in Dongpu depression, using various logging data synthetically, geological and logging characteristics are summarized in term of different blocks on the basis of core analysis, cutting logging, oil testing and commissioning data. The formation mechanism of low resistivity reservoir is studied, and the main factors that cause low resistivity reservoir are discovered. The first factor is fine lithology, high shale content and hydrophilic rock. The second factor is high salinity formation water. The third factor is light oil, high gas quantity dissolved and large difference density of oil-water. The last factor is low amplitude structure of reservoir and low differential degree of oil-water. According to the characteristics of low resistivity reservoir, the method of compound lithology, the method of movable fluid, the method of phase permeability and the method of nuclear magnetic resonance logging are put forward. The compound lithology criterion of distinguishing hydrocarbon is founded in term of different blocks on the basis of electrical efficiency. The evaluation models of reservoir parameters are founded; whose core is oil saturation and phase permeability. In order to calculate oil saturation, the compound lithology model on the basis of electrical efficiency theory is chosen on condition that there is only the combination logging data of acoustic and induction; the W-S model is chosen on condition that there is all-around logging data. The calculational precision of oil saturation in low resistivity reservoir of work area is enhanced when the selection method is utilized. There are 1212 layers of reservoir newly added by the old well reexamination in the ten oil areas. The coincidence rate of logging interpretation reaches 83.2 percent according to the 74 well-times of oil testing or commissioning, which indicates that the distinguishing method and evaluation models of low resistivity reservoir above are feasible.By the reexamination, a ten million tons of proved reserves related to the low resistivity reservoir are newly added, consequently, the groundwork is established to increase reserve and production of old oilfields in the east of China and new livingness is added for the petroleum exploration and development in Dongpu depression.

大陆地壳岩石结构重建：方法与实例

The composition of the continental crust has long been a subject of interest to earth scientists as it can provide key information about the crustal growth and evolution of the continents. In this paper we make a comparative study on the lithological discrimination schemes featuring with the use of different seismic attributes, such as P-wave velocity, P- to S-wave velocity ratio, acoustic or elastic impedances, Lame impedances and high-sensitive identification factors. The results demonstrate that Lame impedances have more powerful constrains than other seismic attributes. In order to fully take the advantage of make the best of the different seismic response of crustal rock, we firstly use seismic attribute that have weak distinguish power to construct loose constrained lithological model, then use seismic attributes that have stronger distinguish power to tighten the constrains of lithological discrimination. We propose a joint scheme (chain constrain technique) by combing all available constrains to reduce the non-uniqueness in mapping rock distribution. We adopt chain constrain technique to construct lithological model beneath Tunxi-Wenzhou transect, Southeastern China, Manzhouli-Suifenhe transect, Northeastern China, and geophysical profile in Bohai Bay Basin, North China. The results can be suumarized as the follows: (1) We compare the sensitivity of different seismic factor constraints on rock types, and conclude that Lame impedances have tighter constrains than seismic velocity, Vp/Vs, density. (2) We propose chain constrains to construct lithological model from integrated geophysical data, and reduce the non-uniqueness in mapping rock distribution. (3) We reconstruct crustal lithological model beneath Tunxi-Wenzhou transect, Southeastern China. The results suggested that Jiangshan-Shaoxing fault is a crust-scale, and it is the boundary between Cathaysia and Yanthze blocks. (4) We construct crustal lithological model beneath Manzhouli-Suifenhe transect, Northeastern China. (5) We map the petrologic distribution along a geophysical profile in Bohai Bay Basin, North China, and construct a three-layered petrology model from the depth 2 km to about 10 km, consisted of basalt (the first layer), pelitic siltstone (the second layer), and silty mudstone and fine sandstone (the third layer).

广西合山固体废弃物制备地质聚合物胶凝材料

Geopolymer gelatinous material was prepared by ferroalloy slag (signed with NKT in laboratory) and circulating fluidization bed slag (CFB slag, signed with NM in laboratory) produced from Heshan city, Guangxi zhuang autonomous region, China. The mechanical properties of the geopolymer made of high content ferroalloy slag can reach the standard of 42.5# portland blastfurnace-slag cement, and it’s processing technology is more simple and not need of mill and burn and will not produce harmful gas. By means of chemical and XRD analyses, it is concluded that NKT is a kind of acidity water-granulated slag with better activation and fit to be activated by alkali activators. Low-cost industrial gypsum (signed with NG in laboratory), analytic reagent oxide(signed with NH in laboratory) and sulfate(signed with NS in laboratory) were selected as alkali activation in the experiment. The results showed NH is a good alkali activator for NKT. Both NH and NG can activate ferroally slag’s activities, but NS can’t alone. The activation effect of superimposing activation of NH and NG excel by separateness. Based on those experiments, optimization compounds were carried out: (1) NKT: NH: NG = 80: 10: 10 and (2) NM: NKT: NS: NG: NH = 10: 70: 2: 8: 10。. The soundness of the test blocks is good by boiling examination. Through XRD, SEM, IR, NMR analyses of geopolymer, the reaction mechanism of geopolymer prepared by alkalescent activating in solid wastes was discussed in the thesis first. It is point out, there is difference in reaction mechanism between traditional geopolymer preparation and the preparation of alkalescent activating solid wastes because NG is a industry product. There is the similar process of depolymerization and reunion of Si-O bond. The latter preparation process generate new subtance but the former doesn’t. In the experiment, we found a performance of NKT that the water requirement of normal consistency of geopolymer reduces with increasing content of NKT. The result shows NKT has some ability to reduce water requirement. The performance is worthy of further research and utilization. Making use of solid wastes to prepare geopolymer, not only can settle environment problem caused by a great deal of dump of NKT, but also settle the shortage of natural resources. Moreover it could take economic, environmental and social benefits and settle thoroughly contradiction in the environment protection and regional economy development and promote circulation economy development.

冀东油田柳南地区新近系油藏剩余油形成及分布规律研究

This thesis is based on the research project of Study on the Geological Characteristics and Remaining Oil Distribution Law of Neogene Reservoirs in Liunan Area, which is one of the key research projects set by PetroChina Jidong Oilfield Company in 2006. The determination of remaining oil distribution and its saturation changes are the most important research contents for the development and production modification of oilfields in high water-cut phases. Liunan oilfield, located in Tangshan of Hebei Province geographically and in Gaoliu structural belt of Nanpu sag in Bohai Bay Basin structurally, is one of the earliest fields put into production of Jidong oilfield. Focusing on the development problems encountered during the production of the field, this thesis establishes the fine geological reservoir model through the study of reservoir properties such as fine beds correlation, sedimentary facies, micro structures, micro reservoir architecture, flow units and fluid properties. Using routine method of reservoir engineering and technology of reservoir numerical modeling, remaining oil distribution in the target beds of Liunan area is predicted successfully, while the controling factors of remaining oil distribution are illustrated, and the model of remaining oil distribution for fault-block structure reservoirs is established. Using staged-subdivision reservoir correlation and FZI study, the Strata in Liunan Area is subdivided step by step; oil sand body data-list is recompiled; diagram databases are established; plane and section configuration of monolayer sandstone body, and combination pattern of sandstone bodys are summarized. The study of multi-level staged subdivision for sedimentary micro-facies shows that the Lower member of Minghuazhen formation and the whole Guantao formation in Liunan Area belong to meandering river and braided river sedimentary facies respectively, including 8 micro facies such as after point bar, channel bar, channel, natural levee, crevasse splay, abandoned channel, flood plain and flood basin. Fine 3D geological modeling is performed through the application of advanced software and integration of geological, seismic logging and reservoir engineering data. High resolution numerical simulation is performed with a reserve fitting error less than 3%, an average pressure fitting fluctuation range lower than 2Mpa and an accumulate water cut fitting error less than 5%. In this way, the distribution law of the target reservoir in the study area is basically recognized. Eight major remaining oil distribution models are established after analysis of production status and production features in different blocks and different layers. In addition, fuzzy mathematics method is used to the integreted evaluation and prediction of abundant remaining oil accumulation area in major production beds and key sedimentary time units of the shallow strata in Liunan Area and corresponding modification comments are put forward. In summary, the establishment of fine reservoir geological model, reservoir numerical simulation and distribution prediction of remaining oil make a sound foundation for further stimulation of oilfield development performance.

均衡重力异常计算与综合解释——以黄海地区为例

Petroleum and Natural Gas is an important strategic resources. The reserves of Petroleum and Natural Gas can’t meet the need of our country, which also blocks the development of economy and threatens the safety of national. Therefore, it makes a great sense to bring “the second round of oil & gas exploration” into effect and study the exploration of oil and gas of Pre-Cenozoic residual basins in China. The integrated geophysical exploration is the main way to research the Pre-Cenozoic residual basins. Gravity exploration is one of the most important exploration methods, which has played an important role in oil and gas prospecting, such as compartmentalizing geotectonic elements, delineating the distribution range of sedimentary basins, searching oil and gas structure, abstracting oil and gas information, and so on, from its naissance. The isostatic gravity anomalies is significant for exploration, which can help us research deep crustal structure, the equilibrium state of earth, the geologic structure of shallow crust, the basement shape of sedimentary basins and the genetic evolution of sedimentary basins. In the paper, we stress the implication and physical meanings systemically, and discuss the calculation theory. On the basis of previous work, we test different isostatic compensation models and parameters to find out their influences to the result of isostatic gravity anomalies. In addition, we improve the method of isostatic gravity anomalies calculation and give a system of isostatic gravity anomalies calculation which is proved has satisfying effect. From the research above, we find that the results of Platt model and Airy model are consistent, which have similar form and almost the same value. However, by contrast, the Airy model is proved has better adaptability than Platt model. The two main parameters——crust thickness and density difference of crust and mantle, both have influence to the isostatic gravity anomalies, but the latter have more. Finally, we adopt the regional field extending edge method to make the result more of actual geologic condition. On the methods above, we calculate the isostatic gravity anomalies field in Yellow Sea area from the Bouguer gravity anomalies and the water depth and altitude data. And then the isostatic gravity anomalies character is analyzed and the integrated geological-geophysical interpretation is made on the basis of summarizing the previous research result systemically and analyzing other geophysical data and geological information. From the research, we find that the Yellow Sea area belongs to continental type crust equilibrium regions, where the isostatic gravity anomalies field is placid and has less fluctuation values, which implies that the area is in equilibrium state to different extends.