Surface plasmon fluorescence spectroscopy and microscopy studies for biomolecular interaction studies

ABSTARCT Biotechnology has enabled the modification of agricultural materials in a very precise way. Crops have been modified through the insertion of new traits or the inhibition of existing gene functions, named Genetically Modified Organism (GMO), and resulted in improved tolerance of herbicide and/or increased resistance against pests, viruses and fungi. Commercial cultivation of GMO started in 1996 and increased rapidly in 2003 according to a recently released report by the International Service for the Acquisition of Agri-Biotech Applications (ISAAA), depicted continuing consumer resistance in Europe and other part of the world. Upon these developments, the European Union regulations mandated labeling of GMOs containing food and as a consequence, the labeling of GMO containing product in the case of exceeding the1% threshold of alien DNA is required. The aim of the study is to be able to detect and quantify the GMO from the mixture of natural food components. The surface plasmon resonance (SPR) technique combined with fluorescence was used for this purpose. During the presented studies, two key issues are addressed and tried to solve; what is the best strategy to design and built an interfacial architecture of a probe oligonucletide layer either on a two dimensional surface or on an array platform; and what is the best detection method allowing for a sensitive monitoring of the hybridisation events. The study includes two parts: first part includes characterization of different PNAs on a 2D planar surface by defining affinity constants using the very well established optical method “Surface Plasmon Fluorescence Spectroscopy”(SPFS) and on the array platform by “Surface Plasmon Fluorescence Microscopy” (SPFM), and at the end comparison of the sensitivity of these two techniques. The second part is composed of detection of alien DNA in food components by using DNA and PNA catcher probes on the array platform in real-time by SPFM.

Progetto ed implementazione di protocolli a basso consumo energetico per reti wireless

"I computer del nuovo millennio saranno sempre più invisibili, o meglio embedded, incorporati agli oggetti, ai mobili, anche al nostro corpo. L'intelligenza elettronica sviluppata su silicio diventerà sempre più diffusa e ubiqua. Sarà come un'orchestra di oggetti interattivi, non invasivi e dalla presenza discreta, ovunque". [Mark Weiser, 1991] La visione dell'ubiquitous computing, prevista da Weiser, è ormai molto vicina alla realtà e anticipa una rivoluzione tecnologica nella quale l'elaborazione di dati ha assunto un ruolo sempre più dominante nella nostra vita quotidiana. La rivoluzione porta non solo a vedere l'elaborazione di dati come un'operazione che si può compiere attraverso un computer desktop, legato quindi ad una postazione fissa, ma soprattutto a considerare l'uso della tecnologia come qualcosa di necessario in ogni occasione, in ogni luogo e la diffusione della miniaturizzazione dei dispositivi elettronici e delle tecnologie di comunicazione wireless ha contribuito notevolmente alla realizzazione di questo scenario. La possibilità di avere a disposizione nei luoghi più impensabili sistemi elettronici di piccole dimensioni e autoalimentati ha contribuito allo sviluppo di nuove applicazioni, tra le quali troviamo le WSN (Wireless Sensor Network), ovvero reti formate da dispositivi in grado di monitorare qualsiasi grandezza naturale misurabile e inviare i dati verso sistemi in grado di elaborare e immagazzinare le informazioni raccolte. La novità introdotta dalle reti WSN è rappresentata dalla possibilità di effettuare monitoraggi con continuità delle più diverse grandezze fisiche, il che ha consentito a questa nuova tecnologia l'accesso ad un mercato che prevede una vastità di scenari indefinita. Osservazioni estese sia nello spazio che nel tempo possono essere inoltre utili per poter ricavare informazioni sull'andamento di fenomeni naturali che, se monitorati saltuariamente, non fornirebbero alcuna informazione interessante. Tra i casi d'interesse più rilevanti si possono evidenziare: - segnalazione di emergenze (terremoti, inondazioni) - monitoraggio di parametri difficilmente accessibili all'uomo (frane, ghiacciai) - smart cities (analisi e controllo di illuminazione pubblica, traffico, inquinamento, contatori gas e luce) - monitoraggio di parametri utili al miglioramento di attività produttive (agricoltura intelligente, monitoraggio consumi) - sorveglianza (controllo accessi ad aree riservate, rilevamento della presenza dell'uomo) Il vantaggio rappresentato da un basso consumo energetico, e di conseguenza un tempo di vita della rete elevato, ha come controparte il non elevato range di copertura wireless, valutato nell'ordine delle decine di metri secondo lo standard IEEE 802.15.4. Il monitoraggio di un'area di grandi dimensioni richiede quindi la disposizione di nodi intermedi aventi le funzioni di un router, il cui compito sarà quello di inoltrare i dati ricevuti verso il coordinatore della rete. Il tempo di vita dei nodi intermedi è di notevole importanza perché, in caso di spegnimento, parte delle informazioni raccolte non raggiungerebbero il coordinatore e quindi non verrebbero immagazzinate e analizzate dall'uomo o dai sistemi di controllo. Lo scopo di questa trattazione è la creazione di un protocollo di comunicazione che preveda meccanismi di routing orientati alla ricerca del massimo tempo di vita della rete. Nel capitolo 1 vengono introdotte le WSN descrivendo caratteristiche generali, applicazioni, struttura della rete e architettura hardware richiesta. Nel capitolo 2 viene illustrato l'ambiente di sviluppo del progetto, analizzando le piattaforme hardware, firmware e software sulle quali ci appoggeremo per realizzare il progetto. Verranno descritti anche alcuni strumenti utili per effettuare la programmazione e il debug della rete. Nel capitolo 3 si descrivono i requisiti di progetto e si realizza una mappatura dell'architettura finale. Nel capitolo 4 si sviluppa il protocollo di routing, analizzando i consumi e motivando le scelte progettuali. Nel capitolo 5 vengono presentate le interfacce grafiche utilizzate utili per l'analisi dei dati. Nel capitolo 6 vengono esposti i risultati sperimentali dell'implementazione fissando come obiettivo il massimo lifetime della rete.

Wireless Sensor Networks for Monitoring Applications

Wireless Sensor Networks (WSNs) are getting wide-spread attention since they became easily accessible with their low costs. One of the key elements of WSNs is distributed sensing. When the precise location of a signal of interest is unknown across the monitored region, distributing many sensors randomly/uniformly may yield with a better representation of the monitored random process than a traditional sensor deployment. In a typical WSN application the data sensed by nodes is usually sent to one (or more) central device, denoted as sink, which collects the information and can either act as a gateway towards other networks (e.g. Internet), where data can be stored, or be processed in order to command the actuators to perform special tasks. In such a scenario, a dense sensor deployment may create bottlenecks when many nodes competing to access the channel. Even though there are mitigation methods on the channel access, concurrent (parallel) transmissions may occur. In this study, always on the scope of monitoring applications, the involved development progress of two industrial projects with dense sensor deployments (eDIANA Project funded by European Commission and Centrale Adritica Project funded by Coop Italy) and the measurement results coming from several different test-beds evoked the necessity of a mathematical analysis on concurrent transmissions. To the best of our knowledge, in the literature there is no mathematical analysis of concurrent transmission in 2.4 GHz PHY of IEEE 802.15.4. In the thesis, experience stories of eDIANA and Centrale Adriatica Projects and a mathematical analysis of concurrent transmissions starting from O-QPSK chip demodulation to the packet reception rate with several different types of theoretical demodulators, are presented. There is a very good agreement between the measurements so far in the literature and the mathematical analysis.

Modellazione e analisi energetica di tecnologie wireless per reti di sensori

Nella tesi viene svolto un lavoro di modellazione del protocollo MAC 802.15.4 Wireless Personal Area Network (WPAN), per reti di sensori; dopodiché esso viene sottoposto ad una serie di analisi energetiche attraverso simulazioni nell'ambiente OMNeT++. Numerosi sono i parametri che sono stati considerati per caratterizzare al meglio le analisi effettuate, nonché le diverse condizioni iniziali. Il profilo energetico ottenuto è stato messo a confronto con quello del protocollo 802.15.4m per TVWS. I dati ottenuti sono stati elaborati con un algoritmo power control con l'obiettivo di raggiungere la massima ottimizzazione energetica.

Simulation of visible light communications in vehicular networks

The rapid development in the field of lighting and illumination allows low energy consumption and a rapid growth in the use, and development of solid-state sources. As the efficiency of these devices increases and their cost decreases there are predictions that they will become the dominant source for general illumination in the short term. The objective of this thesis is to study, through extensive simulations in realistic scenarios, the feasibility and exploitation of visible light communication (VLC) for vehicular ad hoc networks (VANETs) applications. A brief introduction will introduce the new scenario of smart cities in which visible light communication will become a fundamental enabling technology for the future communication systems. Specifically, this thesis focus on the acquisition of several, frequent, and small data packets from vehicles, exploited as sensors of the environment. The use of vehicles as sensors is a new paradigm to enable an efficient environment monitoring and an improved traffic management. In most cases, the sensed information must be collected at a remote control centre and one of the most challenging aspects is the uplink acquisition of data from vehicles. My thesis discusses the opportunity to take advantage of short range vehicle-to-vehicle (V2V) and vehicle-to-roadside (V2R) communications to offload the cellular networks. More specifically, it discusses the system design and assesses the obtainable cellular resource saving, by considering the impact of the percentage of vehicles equipped with short range communication devices, of the number of deployed road side units, and of the adopted routing protocol. When short range communications are concerned, WAVE/IEEE 802.11p is considered as standard for VANETs. Its use together with VLC will be considered in urban vehicular scenarios to let vehicles communicate without involving the cellular network. The study is conducted by simulation, considering both a simulation platform (SHINE, simulation platform for heterogeneous interworking networks) developed within the Wireless communication Laboratory (Wilab) of the University of Bologna and CNR, and network simulator (NS3). trying to realistically represent all the wireless network communication aspects. Specifically, simulation of vehicular system was performed and introduced in ns-3, creating a new module for the simulator. This module will help to study VLC applications in VANETs. Final observations would enhance and encourage potential research in the area and optimize performance of VLC systems applications in the future.

Mac protocols for linear wireless (sensor) networks

Wireless sensor networks (WSNs) consist of a large number of sensor nodes, characterized by low power constraint, limited transmission range and limited computational capabilities [1][2].The cost of these devices is constantly decreasing, making it possible to use a large number of sensor devices in a wide array of commercial, environmental, military, and healthcare fields. Some of these applications involve placing the sensors evenly spaced on a straight line for example in roads, bridges, tunnels, water catchments and water pipelines, city drainages, oil and gas pipelines etc., making a special class of these networks which we define as a Linear Wireless Network (LWN). In LWNs, data transmission happens hop by hop from the source to the destination, through a route composed of multiple relays. The peculiarity of the topology of LWNs, motivates the design of specialized protocols, taking advantage of the linearity of such networks, in order to increase reliability, communication efficiency, energy savings, network lifetime and to minimize the end-to-end delay [3]. In this thesis a novel contention based Medium Access Control (MAC) protocol called L-CSMA, specifically devised for LWNs is presented. The basic idea of L-CSMA is to assign different priorities to nodes based on their position along the line. The priority is assigned in terms of sensing duration, whereby nodes closer to the destination are assigned shorter sensing time compared to the rest of the nodes and hence higher priority. This mechanism speeds up the transmission of packets which are already in the path, making transmission flow more efficient. Using NS-3 simulator, the performance of L-CSMA in terms of packets success rate, that is, the percentage of packets that reach destination, and throughput are compared with that of IEEE 802.15.4 MAC protocol, de-facto standard for wireless sensor networks. In general, L-CSMA outperforms the IEEE 802.15.4 MAC protocol.

Progettazione ed implementazione di un prototipo per la geolocalizzazione indoor dei device wifi in ambito aeroportuale.

Nel documento vengono trattate le principali tecniche di geolocalizzazione basate sull'elaborazione dei segnali elettromagnetici ricevuti. E' altresì introdotto un sistema di remote positioning basato su test di prossimità rafforzato tramite machine learning tramite un approccio simulativo ed una implementazione reale.

Reti wi-fi e sicurezza

Descrizione dei vari standard 802.11 e della loro evoluzione, analisi dei protocolli di sicurezza e possibili attacchi alle reti wireless.

Differences in Demographic Characteristics and Risk Factors in Patients With Spontaneous Vertebral Artery Dissections With and Without Ischemic Events

Spontaneous vertebral artery dissection (sVADs) mainly cause cerebral ischemia, with or without associated local symptoms and signs (headache, neck pain, or cervical radiculopathy), or with local symptoms and signs only.

Quantitative analysis of O(6)-methylguanine DNA methyltransferase (MGMT) promoter methylation in patients with low-grade gliomas

Methylation of the MGMT promoter is supposed to be a predictive and prognostic factor in glioblastoma. Whether MGMT promoter methylation correlates with tumor response to temozolomide in low-grade gliomas is less clear. Therefore, we analyzed MGMT promoter methylation by a quantitative methylation-specific PCR in 22 patients with histologically verified low-grade gliomas (WHO grade II) who were treated with temozolomide (TMZ) for tumor progression. Objective tumor response, toxicity, and LOH of microsatellite markers on chromosomes 1p and 19q were analyzed. Histological classification revealed ten oligodendrogliomas, seven oligoastrocytomas, and five astrocytomas. All patients were treated with TMZ 200 mg/m2 on days 1-5 in a 4 week cycle. The median progression-free survival was 32 months. Combined LOH 1p and 19q was found in 14 patients; one patient had LOH 1p alone and one patient LOH 19q alone. The LOH status could not be determined in two patients and was normal in the remaining four. LOH 1p and/or 19q correlated with longer time to progression but not with radiological response to TMZ. MGMT promoter methylation was detectable in 20 patients by conventional PCR and quantitative analysis revealed the methylation status was between 12 and 100%. The volumetric response to chemotherapy analyzed by MRI and time to progression correlated with the level of MGMT promoter methylation. Therefore, our retrospective case series suggests that quantitative methylation-specific PCR of the MGMT promoter predicts radiological response to chemotherapy with TMZ in WHO grade II gliomas.

Smoking negatively impacts renal cell carcinoma overall and cancer-specific survival

Tobacco use is a leading cause of premature death, yet few studies have investigated the effect of tobacco exposure on the outcome of patients with renal cell carcinoma (RCC). The authors of this report retrospectively studied the impact of smoking on clinicopathologic factors, survival outcomes, and p53 expression status in a large cohort of patients with RCC.

Life Transitions and Aging: Implications for Counseling Older Adults

Presents a conceptual framework for counseling older adults and their families, asserting that the pace of development varies across individuals and that within the same individual, different biological and psychological functions age at different rates. The normative changes of aging can be viewed as life-event/life-transition processes and categorized into 4 interrelated major areas: biological, psychological, environmental, and social/cultural. The counselor's tasks include assisting the older client in differentiating the normal aging process from abnormal processes, assessing the role of self-labeling and stereotyping, and focusing on preventive work with older adults and their families.

UAVNet: A Mobile Wireless Mesh Network Using Unmanned Aerial Vehicles

We developed UAVNet, a framework for the autonomous deployment of a flying Wireless Mesh Network using small quadrocopter-based Unmanned Aerial Vehicles (UAVs). The flying wireless mesh nodes are automatically interconnected to each other and building an IEEE 802.11s wireless mesh network. The implemented UAVNet prototype is able to autonomously interconnect two end systems by setting up an airborne relay, consisting of one or several flying wireless mesh nodes. The developed software includes basic functionality to control the UAVs and to setup, deploy, manage, and monitor a wireless mesh network. Our evaluations have shown that UAVNet can significantly improve network performance.