Métodos de coleta de fezes e determinação dos coeficientes de digestibilidade da fração protéica e da energia de alimentos para o pacu, Piaractus mesopotamicus (Holmberg, 1887)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Ganho genético por diferentes critérios de seleção em populações segregantes de soja

In breeding programs, the complexity of economically outstanding characters, most of which highly influenced by the environment, makes selection difficult. Using genetic parameters, like heritability and gain with selection, it is possible to identify superior genotypes in early generations. Therefore, the aim of the present research was to compare different selection criteria by the estimated gains and the selected progenies, determining the superior and more similar methods. Augmented block design was used with three additional checks. Twelve hundred genotypes were evaluated. The most expressive expected gains were obtained with direct selection. However, the indices have shown to be more appropriate for selecting superior progenies because of their higher total gains, distributed among all the evaluated characters. The Sum of Ranks Index allowed the highest gains in most of the situations analysed.

Apparent digestibility of different ingredients in diets for bullfrog Rana catesbeiana tadpoles

The objective of this study was to determine apparent digestibility of protein and energy of ingredients commonly present in rations fed to bullfrog tadpoles Rana catesbeiana such as corn, soybean meal, wheat meal, rice bran, poultry by-product meal, blood meal, fish meal, corn starch and soybean oil. A completely randomized design was used to test ten experimental diets with four replicates. About 30% of the reference diet was replaced by the test ingredients, except for soybean oil that was used at 10% ratio and 0.5% of chromium oxide as inert marker. The values of apparent digestibility coefficient of crude protein (ADCCP) and gross energy (ADCGE) of the protein ingredients were, respectively: fish meal, 81 and 95%; poultry byproduct meal, 82 and 87%; blood meal, 64 and 53%; and soybean meal, 93 and 90%. While for the energetic ingredients, ADCCP and ADCGE, were, respectively: wheat meal, 100 and 72%; rice bran, 57 and 24%; and corn, 84 and 92%. Soybean oil and cornstarch ADCGE values were 70 and 96%, respectively; cornstarch digestibility is highly dependent on feed processing technique. The results showed that the ing redients of plant origin, except for rice bran, had good digestibility, thus indicating that tadpoles can effectively use plant protein. In this trial, the least digestible ingredients were blood meal and rice bran, thus indicating that the use of such ingredients in bullfrog tadpole diets should be limited. © Copyright by the World Aquaculture Society 2005.

Oil wastes as unconventional substrates for rhamnolipid biosurfactant production by Pseudomonas aeruginosa LBI

Oil wastes were evaluated as alternative low-cost substrates for the production of rhamnolipids by Pseudomonas aeruginosa LBI strain. Wastes obtained from soybean, cottonseed, babassu, palm, and corn oil refinery were tested. The soybean soapstock waste was the best substrate, generating 11.7 g/L of rhamnolipids with a surface tension of 26.9 mN/m, a critical micelle concentration of 51.5 mg/L, and a production yield of 75%. The monorhamnolipid RhaC10C10 predominates when P. aeruginosa LBI was cultivated on hydrophobic substrates, whereas hydrophilic carbon sources form the dirhamnolipid Rha2C10C10 predominantly. © 2005 American Chemical Society and American Institute of Chemical Engineers.

Polymorphisms of DNA repair genes XRCC1 and XRCC3, interaction with environmental exposure and risk of chronic gastritis and grastic cancer

Aim: To evaluate the association between polymorphisms XRCC1 Arg194Trp and Arg399Gln and XRCC3 Thr241Met and the risk for chronic gastritis and gastric cancer, in a Southeastern Brazilian population. Methods: Genotyping by PCR-RFLP was carried out on 202 patients with chronic gastritis (CG) and 160 patients with gastric cancer (GC), matched to 202 (C1) and 150 (C2) controls, respectively. Results: No differences were observed among the studied groups with regard to the genotype distribution of XRCC1 codons 194 and 399 and of XRCC3 codon 241. However, the combined analyses of the three variant alleles (194Trp, 399Gln and 241Met) showed an increased risk for chronic gastritis when compared to the GC group. Moreover, an interaction between the polymorphic alleles and demographic and environmental factors was observed in the CG and GC groups. XRCC1 194Trp was associated with smoking in the CG group, while the variant alleles XRCC1 399Gln and XRCC3 241Met were related with gender, smoking, drinking and H pylori infection in the CG and GC groups. Conclusion: Our results showed no evidence of a rela-tionship between the polymorphisms XRCC1 Arg194Trp and Arg399Gln and XRCC3 Thr241Met and the risk of chronic gastritis and gastric cancer in the Brazilian population, but the combined effect of these variants may interact to increase the risk for chronic gastritis, considered a premalignant lesion. Our data also indicate a gene-environment interaction in the susceptibility to chronic gastritis and gastric cancer. © 2005 The WJG Press and Elsevier Inc. All rights reserved.

Efeitos da dessecação de plantas de soja no potencial fisiológico e sanitário das sementes

The objective of this paper was to verify the ideal moment of application of desiccants on the soybeans crop, to obtain seeds with maximum physiological and sanitary quality. The cultivar IAC-15 was sowed at the experimental area of FE/UNESP - Campus of Ilha Solteira, located in the district of Selvíria, State of Mato Grosso do Sul (20° 22′S, 51° 22′W at approximately 335 m of altitude). The experimental design was a randomized block, with treatments in a factorial scheme of 3×3 and 4×4 (dessicant x application time), in 1996/97 and 1997/98, respectively. The desiccants applied during the season agricultural year 1996/97 were: paraquat, diquat, paraquat+diquat mix at the doses 400; 300; 200+150 e 400 g a.i.ha -1, respectively. In 1997/98 the same desiccants were used, at the same doses, with additional treatment application of ammonium glufosinate at the dose of 400 g a.i.ha -1. The desiccants were applied three times in 1996/97 and four times in 1997/98 with 5 days intervals starting at the R 6 stage. According to the environmental conditions of this research the best desiccation time was when soybean plants had 80% to 90% of pods with yellow and brown coloration and seeds with 45% to 60% of water content. There were no effects of any of the desiccants tested in the physiological and sanitary potential required for commercialization of the seeds.

Eucalyptus ESTs corresponding to the enzyme glutamine synthetase and the protein D1, sites of action of herbicides that cause oxidative stress

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Solubilization of proteins from human lymph node tissue and two-dimensional gel storage.

In the present study, we compared six different solubilization buffers and optimized two-dimensional electrophoresis (2-DE) conditions for human lymph node proteins. In addition, we developed a simple protocol for 2-D gel storage. Efficient solubilization was obtained with lysis buffers containing (a) 8 M urea, 4% CHAPS (3-[(3-cholamidopropyl) dimethylammonio]-1-propanesulfonate), 40 mM Tris base, 65 mM DTT (dithiothreitol) and 0.2% carrier ampholytes; (b) 5 M urea, 2 M thiourea, 2% CHAPS, 2% SB 3-10 (N-decyl-N,N-dimethyl-3-ammonio-1-propanesulfonate), 40 mM Tris base, 65 mM DTT and 0.2% carrier ampholytes or (c) 7 M urea, 2 M thiourea, 4% CHAPS, 65 mM DTT and 0.2% carrier ampholytes. The optimal protocol for isoelectric focusing (IEF) was accumulated voltage of 16,500 Vh and 0.6% DTT in the rehydration solution. In the experiments conducted for the sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), best results were obtained with a doubled concentration (50 mM Tris, 384 mM glycine, 0.2% SDS) of the SDS electrophoresis buffer in the cathodic reservoir as compared to the concentration in the anodic reservoir (25 mM Tris, 192 mM glycine, 0.1% SDS). Among the five protocols tested for gel storing, success was attained when the gels were stored in plastic bags with 50% glycerol. This is the first report describing the successful solubilization and 2D-electrophoresis of proteins from human lymph node tissue and a 2-D gel storage protocol for easy gel handling before mass spectrometry (MS) analysis.

Optimization of xylanase biosynthesis by Aspergillus japonicus isolated from a Caatinga area in the Brazilian state of Bahia

The objective of this research was to investigate the potential of xylanase production by Aspergillus japonicus and to determine the effects of cultivation conditions in the process, aiming toward optimization of enzyme production. The best temperature, as well as the best carbon source, for biomass production was determined through an automated turbidimetric method (Bioscreen-C). The enzyme activity of this fungus was separately evaluated in two solid substrates (wheat and soybean bran) and in Vogel medium, adding other carbon sources. Temperature effects, cultivation time, and spore concentrations were also tested. The best temperature for enzyme and biomass production was 25°C; however, the best carbon source for growth (determined by the Bioscreen C) did not turn out to be a good inducer of xylanase production. Maximum xylanase activity was achieved when the fungus was cultivated in wheat bran (without the addition of any other carbon source) using a spore concentration of 1 × 107 spores/mL (25°C, pH 5.0, 120 h). A. japonicus is a good xylanase producer under the conditions presented in these assays. © 2006 Academic Journals.

Efeito de resíduos vegetais de milheto (Pennisetum americanum) e da calagem em algumas propriedades físicas e químicas de um nitossolo vermelho em sistema de semeadura direta

This work studied alterations of physical properties of a distroferric red nitosol due to millet (Pennisetum americanum) covering, with or without liming, in a no-tillage system during the agricultural years of 1999/2000 and 2000/2001, using soybean and corn as culture succession. 6m×10m plots, with and without millet as vegetal covering, received only one initial superficial application of limestone, 3.1 t ha-1 in the first half of each plot in order to obtain 70% base saturation (V), after the desiccation of the millet. Some physical properties as soil density, aggregate stability, > 2 mm aggregate proportion, macro and micro porosity were analyzed whereas the chemical analysis determined Ca and Mg macro nutrients, organic matter, soil pH and H+Al. Millet vegetal residues and surface liming did not alter soil density nor the average weight diameter (AWD), > 2 mm aggregate, soil macro porosity and organic matter content, twenty-four months after the no-tillage system implantation for studied experimental conditions. Soil micro porosity was significantly affected in layers deeper than 0.20 m, in treatment with millet and limestone. Calcium, magnesium and H + Al contents and the soil pH values suffered significant alterations in superficial layer, between 0-0.05 m.

Intervalo hídrico ótimo e produtividade de cultivares de soja

The objective of this study was to determine the optimal water interval and its relationship with soybean yield. For this study, an experiment was carried out in Jaboticabal, São Paulo State, Brazil, in a Haplustox medium textured soil. The experimental design consisted of a completely randomized with subdivided plots (six compaction levels and four soybean cultivars), with four replications. The soil compaction levels were: T 0 = 0, T 1* = 1, T 1 = 1, T 2 = 2, T 4 = 4 and T 6 = 6 strides of a 11 ton tractor, on the same place, side by side on soil surface. In T 1* the compaction occurred when the soil was dry. In December, 2003 the soybean (Glycine max), cultivars IAC Foscarin 31, MG/BR 46 (Conquista), BRS/MG 68 (Vencedora) and IAC 8 - 2 were sown. After sowing, indeformed soil samples were collected in layers of 0.03-0.06, 0.08-0.11, 0.15-0.18 and 0.22-0.25 m for determination of soil water content and resistance to penetration curve and the optimal water content. According to model, the critical soil bulk density (Dsc) for soybean yield varied between cultivars from 1.56 to 1.64 Mg m -3. The soil bulk density at which the yield of soybean cultivars decreased was greater than the Dsc.

Analysis of combining ability in soybean cultivars

Eight soybean cultivars (Doko, Bossier, Ocepar-4, BR-15, FT-Cometa, Savana, Paraná and Cristalina) were crossed in a diallel design. Plants of the F1 generation and their parents were evaluated under short-day conditions for the determination of the general (GCA) and specific (SCA) combining ability. The estimated GCA and SCA values were significant for the evaluated traits except for the total cycle. Highest GCA effects for the traits days to flowering, plant height, insertion height, number of branches and total cycle were estimated for the cultivars Doko, Cristalina and Savana. The variability observed in the trait days to flowering can, for the most part, be explained by additive effects.

Path analysis and expected response in indirect selection for grain yield in soybean

This study aimed to determine the best auxiliary trait for indirect selection of soybean grain yield, through path analysis and in avoidance of the adverse effects of multicollinearity and expected response. Seventy-nine F5 soybean genotypes from the cross FT-Cometa x Bossier were used. The populations were distributed on the field was the families inserted with replicated controls. Primary and secondary traits of grain yield were evaluated in four phenotypically superior plants per family. The traits number of pods, height and number of nodes were considered as the most important, showing the best combination of direct effect and genotypic correlation. The number of pods achieved the highest expected gain through the estimation method based on the selection differential. On the other hand, plant height, by the method based on selection intensity, was not a good indicator of the most productive plants.

The inhibition of 5-enolpyruvylshikimate-3-phosphate synthase as a model for development of novel antimicrobials

EPSP synthase (EPSPS) is an essential enzyme in the shikimate pathway, transferring the enolpyruvyl group of phosphoenolpyruvate to shikimate-3-phosphate to form 5-enolpyruvyl-3-shikimate phosphate and inorganic phosphate. This enzyme is composed of two domains, which are formed by three copies of βαβαββ-folding units; in between there are two crossover chain segments hinging the nearly topologically symmetrical domains together and allowing conformational changes necessary for substrate conversion. The reaction is ordered with shikimate-3-phosphate binding first, followed by phosphoenolpyruvate, and then by the subsequent release of phosphate and EPSP. N-[phosphomethyl]glycine (glyphosate) is the commercial inhibitor of this enzyme. Apparently, the binding of shikimate-3-phosphate is necessary for glyphosate binding, since it induces the closure of the two domains to form the active site in the interdomain cleft. However, it is somehow controversial whether binding of shikimate-3-phosphate alone is enough to induce the complete conversion to the closed state. The phosphoenolpyruvate binding site seems to be located mainly on the C-terminal domain, while the binding site of shikimate-3-phosphate is located primarily in the N-terminal domain residues. However, recent results demonstrate that the active site of the enzyme undergoes structural changes upon inhibitor binding on a scale that cannot be predicted by conventional computational methods. Studies of molecular docking based on the interaction of known EPSPS structures with (R)- phosphonate TI analogue reveal that more experimental data on the structure and dynamics of various EPSPS-ligand complexes are needed to more effectively apply structure-based drug design of this enzyme in the future. © 2007 Bentham Science Publishers Ltd.

Development of SCAR marker linked to stem canker resistance gene in soybean

Stem canker caused by the fungus Diaporthe phaseolorum f. sp. meridionalis is a disease that limits soybean cultivation. Phenotypic evaluations aiming at disease resistance require labor-intensive processes, as for instance handling and transport of phytopathogens. The use of DNA markers in the selective procedures eases certain phases, besides being practical, safe and reliable. A RAPD fragment of 588pb was identified among bulks of resistant and susceptible plants in the cross BR92-15454 (R) x IAC-11 (S). Through co-segregation, the distance between the resistance locus and the fragment was estimated at 7.4 ± 2.1 cM, with a Lodmax. of 23.072 (first year) and at 6.0 ± 3.4 cM with a Lodmax. of 7.806 (second year). The fragment was converted into a SCAR marker and digested with enzyme Hinc II, which made the classification in homozygous resistant, heterozygous resistant and susceptible plants possible. This SCAR marker is suitable for use in the improvement program conducted in Jaboticabal.