Diagnosis of invasive candidiasis by enzyme-linked immunosorbent assay using the N-terminal fragment of Candida albicans hyphal wall protein I

Background: The diagnosis of invasive candidiasis is difficult because there are no specific clinical manifestations of the disease and colonization and infection are difficult to distinguish. In the last decade, much effort has been made to develop reliable tests for rapid diagnosis of invasive candidiasis, but none of them have found widespread clinical use. Results: Antibodies against a recombinant N-terminal fragment of the Candida albicans germ tube-specific antigen hyphal wall protein 1 (Hwp1) generated in Escherichia coli were detected by both immunoblotting and ELISA tests in a group of 36 hematological or Intensive Care Unit patients with invasive candidiasis and in a group of 45 control patients at high risk for the mycosis who did not have clinical or microbiological data to document invasive candidiasis. Results were compared with an immunofluorescence test to detect antibodies to C. albicans germ tubes (CAGT). The sensitivity, specificity, positive and negative predictive values of a diagnostic test based on the detection of antibodies against the N-terminal fragment of Hwp1 by immunoblotting were 27.8 %, 95.6 %, 83.3 % and 62.3 %, respectively. Detection of antibodies to the N-terminal fragment of Hwp1 by ELISA increased the sensitivity (88.9 %) and the negative predictive value (90.2 %) but slightly decreased the specificity (82.6 %) and positive predictive values (80 %). The kinetics of antibody response to the N-terminal fragment of Hwp1 by ELISA was very similar to that observed by detecting antibodies to CAGT. Conclusion: An ELISA test to detect antibodies against a recombinant N-terminal fragment of the C. albicans germ tube cell wall antigen Hwp1 allows the diagnosis of invasive candidiasis with similar results to those obtained by detecting antibodies to CAGT but without the need of treating the sera to adsorb the antibodies against the cell wall surface of the blastospore.

Transport of pollutants through the water and subsurface soil using simulated acid rain

The mobility of heavy metals (Zn, Cd, Pb and Ni) was studied in the laboratory acidic leaching two different soils around Ibadan with simulated acid rain. The sampling was carried out from two different sites viz: Orogun and Ilupeju respectively. For Orogun site a depth of 128cm was reached (consisting of four horizons). Different length of polyvinyl chloride (PVC) pipes were cut for different soil horizon depth as observed on the field. The PVC pipes were packed with requires masses of soil. This is then leached using simulated acid rain of different pH of 2.0, 4.0, 6.0 and 8.0 after spiking with known volume of standard solution of metals of interest. It was found that simulated acid rain enhanced the mobility of metals in solution. The pH, Cation Exchange capacity, % clay and organic matter were found to contributed majority to the mobility of metals. Generally as observed, the mobility of metal was to follow the order Zn>Ni>Pb>Cd as the soil is becoming more acidic

Classifying Ecosystem Services for Economic Valuation: The case of forest water services

30 p.

Economic Assessment of Forest Ecosystem Services Losses: Cost of Policy Inaction

52 p.

Studies toward the total synthesis of ritterazine B : the investigation of alkynylation reactions for use in the synthesis of the western fragment

The ritterazine and cephalostatin natural products have biological activities and structures that are interesting to synthetic organic chemists. These products have been found to exhibit significant cytotoxicity against P388 murine leukemia cells, and therefore have the potential to be used as anticancer drugs. The ritterazines and cephalostatins are steroidal dimers joined by a central pyrazine ring. Given that the steroid halves are unsymmetrical and highly oxygenated, there are several challenges in synthesizing these compounds in an organic laboratory.

Ritterazine B is the most potent derivative in the ritterazine family. Its biological activity is comparable to drugs that are being used to treat cancer today. For this reason, and the fact that there are no reported syntheses of ritterazine B to date, our lab set out to synthesize this natural product.

Herein, efforts toward the synthesis of the western fragment of ritterazine B are described. Two different routes are explored to access a common intermediate. An alkyne conjugate addition reaction was initially investigated due to the success of this key reaction in the synthesis of the eastern fragment. However, it has been found that a propargylation reaction has greater reactivity and yields, and has the potential to reduce the step count of the synthesis of the western fragment of ritterazine B.

Modeling the Links between Biodiversity, Ecosystem Services and Human Wellbeing in the Context of Climate Change: Results from an Econometric Analysis on the European Forest Ecosystems

25 p.

The search for gravitational waves from the coalescence of black hole binary systems in data from the LIGO and Virgo detectors. Or: A dark walk through a random forest

The LIGO and Virgo gravitational-wave observatories are complex and extremely sensitive strain detectors that can be used to search for a wide variety of gravitational waves from astrophysical and cosmological sources. In this thesis, I motivate the search for the gravitational wave signals from coalescing black hole binary systems with total mass between 25 and 100 solar masses. The mechanisms for formation of such systems are not well-understood, and we do not have many observational constraints on the parameters that guide the formation scenarios. Detection of gravitational waves from such systems — or, in the absence of detection, the tightening of upper limits on the rate of such coalescences — will provide valuable information that can inform the astrophysics of the formation of these systems. I review the search for these systems and place upper limits on the rate of black hole binary coalescences with total mass between 25 and 100 solar masses. I then show how the sensitivity of this search can be improved by up to 40% by the the application of the multivariate statistical classifier known as a random forest of bagged decision trees to more effectively discriminate between signal and non-Gaussian instrumental noise. I also discuss the use of this classifier in the search for the ringdown signal from the merger of two black holes with total mass between 50 and 450 solar masses and present upper limits. I also apply multivariate statistical classifiers to the problem of quantifying the non-Gaussianity of LIGO data. Despite these improvements, no gravitational-wave signals have been detected in LIGO data so far. However, the use of multivariate statistical classification can significantly improve the sensitivity of the Advanced LIGO detectors to such signals.

Ecological aspects of New Forest streams, draining one of Britain's unique areas

This article describes the streams of this unique area of Britain and reviews the published and some unpublished information that is currently available. None of the rivers in the New Forest are more than 30 km long. Many reaches have been artificially straightened, channelized and regraded since the 1840's. The stream waters are typically base-poor, with low nutrient concentrations. Primary productivity and standing crops of algae are predictably low when compared with other streams carrying higher concentrations of minerals and nutrients. The earliest records on the macroinvertebrate fauna go back to the late 19th Century. By 1940, over 20 species of Trichoptera and 10 species of Plecoptera had been recorded, but only four species of Ephemeroptera. Twenty species of fish occur in the streams of the New Forest of which the most common are brown trout, minnow, bullhead, stone loach, brook lamprey and eel.

Rapid changes in the vegetation of a shallow pond in Epping Forest, related to recent droughts

Over much of Britain, 1995 and 1996 have been perceived as drought years. To evaluate the impact that local climatic conditions are having upon successional changes in higher vegetation (macrophytes), Speakmans Pond in Epping Forest was surveyed and mapped in 1996. The results are related to previous vegetation surveys carried out in 1989 and 1991. In 1989 the dominant marginal vegetation was floating sweet-grass Glyceria fluitans, which also covered a major part of the main body of the pond. Other abundant species included soft rush Juncus effusus, reed mace Typha latifolia and yellow flag Iris pseudocorus. A small (central) area of open water contained bladderwort Utricularia vulgaris and white water-lily Nymphaea alba. A similar plant coverage was found in 1991, with a dominance of floating sweet-grass along the shallow eastern edge. A marked change in the pond was found during the 1996 survey of vegetation in July, when the pool was dry. The major plant cover now consisted of creeping bent Agrostis stolonifera, with isolated clumps of Yorkshire fog Holcus lanatus around the edges; both are terrestrial grasses found on land surrounding the pond. Rushes (Juncus) had increased their distribution round the margins of the pond, and the patch of yellow flag noted in 1989 and 1991 was not found in 1996. The deeper trenches were also dry, but a small patch of white water-lily remained adjacent to one of the trenches.

Comparative limnology of waters in a coniferous forest: is a generalisation possible?

The high density of meres and mosses in the Delamere area comes from numerous moraine-hollows formed after the melting of stranded ice-blocks following last glaciation. The main vegetation is of conifers along with some deciduous species and the area was designated as a National Forest Park in 1987. It has been managed since the beginning of the 19th century and is a popular tourist area with walking, orienteering, cycling and educational activities. In recent years this forest park has been attracting over half a million people per year. This paper studies the limnology of different aquatic habitats in the Delamere Forest area in order to give some insight into the waters of a coniferous, temperate forest area, which has so far been largely unexplored. The authors assume therefore, thought that despite apparent large variability in origin, age, surface area, morphometry, catchment size and hydraulic regime, the waters of Delamere Forest might share some revealing chemical and biological features. Seven water-bodies in the Delamere Forest Park area, namely, Black Lake, Blakemere Moss, Delamere Lake, Delamere Quarry, Hatchmere, Windyhowe Farm Spring and Fir Brook were sampled, their water chemistry and dissolved organic carbon and the occurrence of phytoplankton and zooplankton species examined. In a final chapter the authors analyse their findings for patterns.

Study and comparison of four forest structures on Mt. Chortiatis (northern Greece)

EL proyecto estudia y analiza la estructura de cuatro bosques en el monte Chortiatis, Grecia.

Long-term natural acidification of upland sites in Cumbria: Evidence from post-glacial lake sediments

Studies by the Freshwater Biological Association over the last 25 years have supplied data relevant to the levels of acidity in local soils and water before the onset of industrial pollution and current interest in acid rain. This article reviews published analysis from cores of lake sediments, in or near the catchment of the River Duddon. Electron spin resonance spectra of humic acids and iodine values confirm evidence from pollen analysis for a history of progressive acidification of the source material of lake sediments since before 5000 radiocarbon years, in upland catchments of the Lake District. Processes involved included: removal of basic ions from soils by rainfall, the effects of which were intensified by removal by man of deciduous forest; acidification of soils and waters by decomposition products of Calluna and further acidification of waters by Sphagnum species which colonized habitats where drainage became impeded by paludification processes.

Development of trophic state and phytoplankton in an oligo-mesotrophic reservoir (Kleine Kinzig) in Black Forest, Germany

Since 1989, intensive studies have been made on a relatively new (1983-84) oligotrophic reservoir and its pre-reservoir in the Black Forest. This paper briefly reports on the hydrochemistry, especially annual variations in phosphorus loadings, and the seasonal development of phytoplankton in 1989 and 1990.

História ambiental e paisagens simbólicas no município de São Pedro da Aldeia (RJ): a Lagoa de Araruama e a Serra de Sapiatiba

Este trabalho visa contribuir com os estudos de História Ambiental e de Geografia ao abordar a interação entre os aspectos culturais e a natureza da Lagoa de Araruama e da Serra de Sapiatiba, localizado no Estado do Rio de Janeiro. A pesquisa propõe uma análise das paisagens simbólicas do município de São Pedro da Aldeia (RJ) por intermédio do 3 nível da História Ambiental. Além de caracterizar estas áreas como paisagens simbólicas inseridas na Região dos Lagos numa Área de Proteção Ambiental (APA de Sapiatiba), destaca-se a importância do capital imaterial e da história ambiental na conservação da diversidade de um pequeno fragmento de Mata Atlântica e também da natureza das águas em um importante trecho da maior lagoa hipersalina do mundo. Portanto, nosso objetivo neste estudo é desvendar a História Ambiental da Lagoa de Araruama e da Serra de Sapiatiba no município de São Pedro da Aldeia (RJ), a partir da análise da transformação da paisagem.

Chuva de sementes: dinâmica de dispersão na presença de uma espécie exótica invasora, Artocarpus heterophyllus Lam. (jaqueira), no Parque Estadual da Ilha Grande, Angra dos Reis, RJ

A chuva de sementes é a dinâmica de dispersão de uma floresta, representando o que chega ao solo por meio dos agentes dispersores. Na comunidade de plantas, as síndromes de dispersão predominantes permitem entender os estádios sucessionais, estrutura e o nível de conservação da vegetação. No Brasil, a jaqueira, Artocarpus heterophyllus, é considerada uma espécie exótica invasora, que foi introduzida no período colonial. Essa invasão biológica pode comprometer a dispersão dos diásporos de espécies nativas pela chuva de sementes, já que a dispersão é influenciada pela distribuição espacial das plantas e pelas barreiras presentes no ambiente. O trabalho teve por objetivo verificar se a jaqueira, por ser uma espécie exótica invasora, influência na composição e abundância da chuva de sementes. O estudo foi realizado em floresta Atlântica, localizada no Parque Estadual da Ilha Grande, RJ. Foram utilizados para a coleta da chuva de semente 16 coletores de 1m de diâmetro, em áreas com (C) e sem (S) jaqueira, totalizando 32 coletores verificados mensalmente durante um ano de coleta. As análises estatísticas realizadas foram ANOVA, Regressão e NMDS, com o objetivo de verificar se a presença da jaqueira estaria influenciando na chuva de sementes quanto a riqueza, composição e abundância. Foram coletadas 320 amostras e contabilizadas 166.376 sementes, sendo encontrados 84 morfoespécies, 29 espécies em 25 famílias e 55 morfoespécies não identificadas. As áreas sem (S) jaqueira apresentaram maior riqueza, menor abundância e maior diversidade. Nas áreas com jaqueira (C) a abundância de sementes nativas apresentou uma relação negativa com a abundância dessa exótica nas parcelas. A composição e a abundância dos diásporos não tiveram uma separação nítida entre as áreas com e sem jaqueiras, como mostrado no NMDS. Porém, quando analisado o primeiro eixo do NMDS com a abundância de jaqueiras, a ordenação das grades mostrou ter uma relação com a abundância de jaqueiras. As principais síndromes de dispersão observadas no trabalho, referente às espécies que foram identificadas, foram à anemocoria e a zoocoria, sendo esta ultima síndrome a mais abundante entre as áreas. Os resultados mostraram que a presença das jaqueiras afeta, negativamente a chuva de sementes no Parque Estadual da Ilha Grande. Uma menor riqueza e abundância de sementes nativas alcançaram o solo nas áreas com jaqueira (C) podendo afetar a sucessão e a dinâmica da floresta.