Genomic DNA microarray comparison of gene expression patterns in Paracoccidioides brasiliensis mycelia and yeasts in vitro

Paracoccidioides brasiliensis is a thermally dimorphic fungus, and causes the most prevalent systemic mycosis in Latin America. Infection is initiated by inhalation of conidia or mycelial fragments by the host, followed by further differentiation into the yeast form. Information regarding gene expression by either form has rarely been addressed with respect to multiple time points of growth in culture. Here, we report on the construction of a genomic DNA microarray, covering approximately 25% of the genome of the organism, and its utilization in identifying genes and gene expression patterns during growth in vitro. Cloned, amplified inserts from randomly sheared genomic DNA (gDNA) and known control genes were printed onto glass slides to generate a microarray of over 12 000 elements. To examine gene expression, mRNA was extracted and amplified from mycelial or yeast cultures grown in semi-defined medium for 5, 8 and 14 days. Principal components analysis and hierarchical clustering indicated that yeast gene expression profiles differed greatly from those of mycelia, especially at earlier time points, and that mycelial gene expression changed less than gene expression in yeasts over time. Genes upregulated in yeasts were found to encode proteins shown to be involved in methionine/cysteine metabolism, respiratory and metabolic processes (of sugars, amino acids, proteins and lipids), transporters (small peptides, sugars, ions and toxins), regulatory proteins and transcription factors. Mycelial genes involved in processes such as cell division, protein catabolism, nucleotide biosynthesis and toxin and sugar transport showed differential expression. Sequenced clones were compared with Histoplasma capsulatum and Coccidioides posadasii genome sequences to assess potentially common pathways across species, such as sulfur and lipid metabolism, amino acid transporters, transcription factors and genes possibly related to virulence. We also analysed gene expression with time in culture and found that while transposable elements and components of respiratory pathways tended to increase in expression with time, genes encoding ribosomal structural proteins and protein catabolism tended to sharply decrease in expression over time, particularly in yeast. These findings expand our knowledge of the different morphological forms of P. brasiliensis during growth in culture.

Using chemical and physical parameters to define the quality of Pardo River water (Botucatu-SP-Brazil)

This paper aims to study the ecological system of the Pardo River, at the source and lower-order passages, which are in the Botucatu area, São Paulo State, Brazil. This study was carried out to determine water quality with some chemical-physical indicators, coliforms, and chemical species of samples taken monthly, 1995/02-1996/01, from eight sampling stations sited along the Pardo River. The results in the river monitoring are discussed based on annual averages, analysis of variance, and compared to Tukey's Studentized Range-HSD, and principal component analysis (PCA) was applied to normalize data to assess association between variables. We can conclude that the variables used are very efficient for identifying and that the dry season shows the worst water quality. These were caused by organic matter, nutrients (originate) from anthropogenic sources (spatial sources) and mainly municipal wastewater, affecting the quality and hydrochemistry of the river water, which have been differentiated and assigned to polluting sources. Meanwhile, the degree of degradation of the Pardo River is low (sewage treatment carried out by the city of Pardinho is efficient), leaving the water of the river suitable for use by the population of Botucatu, after conventional treatment (Conama, Resolucao No. 20, CONAMA, Brazilia DF, 09-23, 1986-the water of the Pardo river is classified as level 03). (C) 2001 Elsevier B.V. Ltd. All rights reserved.

Changes in abiotic characteristics of water in the Paranapanema River and three lateral lagoons at mouth zone of the Jurumirim Reservoir during the flood period, São Paulo, Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Biometrics studies of caste development in Nasutitermes coxipoensis (Isoptera; Termitidae)

A biometric study of caste development was carried out using Nasutitermes sp., by measuring the height, width, and length of the head, the length and width of the pronotum and mesonotum, and the length of the posterior tibia. These measurements were taken on 200 individuals, including larvae, nymphs, workers, pre-soldiers and soldiers. For instar separation, it was verified that the Principal Component Analysis (P.C.A.) was the most efficient methodology. Results of this analysis showed that Nasutitermes coxipoensis follows the general pattern of development presented by other Nasutitermes.

Toward a hierarchical concept of plant stress

A number of attempts have been made to obtain a clear definition of biological stress. However, in spite of the efforts, some controversies on the concept of plant stress remain. The current versions are centered either on the cause (stress factor) or on the effect (stress response) of environmental stress. The objective of this study was to contribute to the definition of stress, using a hierarchical approach. Thus, we have performed an analysis of the most usual stress concepts and tested the relevance of considering different observation scales in a study on plant response to water deficit. Seedlings of Eucalyptus grandis were grown in vitro at water potentials ranging from -0.16 to -0.6 MPa, and evaluated according to growth and biochemical parameters. Data were analyzed through principal component analysis (PCA), which pointed to a hierarchical organization in plant responses to environmental disturbances. Growth parameters (height and dry weight) are more sensitive to water deficit than biochemical ones (sugars, proline, and protein), suggesting that higher hierarchical levels were more sensitive to environmental constraints than lower hierarchical ones. We suggest that before considering an environmental fluctuation as stressful, it is necessary to take into account different levels of plant response, and that the evaluation of the effects of environmental disturbances on an organism depends on the observation scale being used. Hence, a more appropriate stress concept should consider the hierarchical organization of the biological systems, not only for a more adequate theoretical approach, but also for the improvement of practical studies on plants under stress.

Distribuição e abundância de espécies arbóreas em cerradões no Pantanal, Estado do Mato Grosso do Sul, Brasil

Os cerradões no Pantanal ocorrem em áreas não inundáveis da planície e são importantes para a economia regional. Das áreas de cerradão são retiradas madeiras para construção de cercas, currais e galpões. Apesar da grande importância dos recursos vegetais do cerradão, existem poucas informações para embasar sua conservação e uso sustentável. Este trabalho teve como objetivos estudar a abundância, a distribuição das espécies arbóreas e correlações com a fertilidade do solo em áreas de cerradão (savana florestada) do Pantanal Sul Mato-grossense. Foram estudadas seis áreas de cerradão na sub-região da Nhecolândia, por meio de 30 pontos quadrantes, totalizando 120 árvores amostradas, com circunferência a altura do peito (CAP) > 15 cm, em cada área. As comparações florísticas, de abundância das espécies e de fertilidade do solo, foram efetuadas por análises de componentes principais (PCA). As áreas mostraram-se heterogêneas, apresentando diferentes níveis de fertilidade do solo, estrutura e composição da vegetação. Dois cerradões foram agrupados em termos de fertilidade do solo e de estrutura da vegetação, apresentando muitas árvores de Qualea grandiflora Mart., espécie que ocorreu associada a solos com maiores teores de fósforo. Outros dois cerradões apresentaram composição florística mais semelhante que os demais, apesar de ocorrerem em solos com diferentes níveis de fertilidade, indicando perturbação antrópica.

Evidence of higher photosynthetic plasticity in the early successional Guazuma ulmifolia Lam. compared to the late successional Hymenaea courbaril L. grown in contrasting light environments

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Artisanal fisheries in urban reservoirs: a case study from Brazil (Billings Reservoir, São Paulo Metropolitan Region)

Billings Reservoir is an urban reservoir located in the São Paulo Metropolitan Region. Tt supports 101 active artisanal fishermen. To describe this fishery, landings were recorded daily between February 1996 and January 1997 at Colonia (23 degrees 50' 57 S; 46 degrees 40' 02 W). In every landing, a data collector recorded catch, effort, fishing gears and fishing grounds. A total of 147 593 kg of fish were recorded in 3515 fishing trips. The exotic Nile tilapia, Oreochromis niloticus (L.), was the main species exploited (81.4% of the annual catches). Five other species were also targeted: the characid Astyanax eigenmaniorum (Cope) (13.0% of the annual catches); the erythrinid Hoplias aff malabaricus (Block) (2.1%); the exotic cyprinid Cyprinus carpio L. (Campos & Fernandez-Yepez) (2.4%); the curimatid Cyphocharax modestus L. (1.1%); and the pimelodid Rhamdia sp. (0.1%). Two main groups of fishermen were discriminated using Principal Components Analysis; these were associated with the type of fishing gear and fishing strategies, i.e. those who exploited Nile tilapia with cast nets and beating gill nets, and those who exploited other species with set gill nets. Management and maintenance of this fishery should consider the positive top-down effects that Nile tilapia could have in controlling eutrophication and also the social benefits.

Compartilhamento de recursos por duas espécies de peixes nectobentônicas de riachos na bacia do rio Cachoeira (BA)

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Composição centesimal, potencial antioxidante e perfil dos ácidos graxos de sementes de jambolão (Syzygium cumini L.)

The aim of this work was to characterize jambolan seeds regarding its centesimal composition, and also to evaluate its antioxidant potential and fatty acid profile. To obtain the extract, dehydrated and grinded seeds were extracted with ethyl alcohol for 30 minutes, at a proportion of 1:3 of seeds:ethyl alcohol, under continuous agitation, at room temperature. Afterwards, the mixture was filtered and the supernatant subjected to a rotoevaporator at 40 degrees C aiming to determine, by direct weighing, the extract's dry matter yield. According to the results of centesimal composition, higher values were found for total carbohydrates. Ethanolic extract from jambolan seeds exhibited antioxidant potential, given by the EC(50) value, as well as by the amount of total phenolic compounds. In the oil studied, higher percentage of unsatured fatty acids stood out, being linoleic acid the main component, considered an essential fatty acid.

Performance of an Anaerobic Baffled Reactor (ABR) in treatment of cassava wastewater

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Evaluation of Brazilian woods as an alternative to oak for cachacas aging

Cachaca was aged for 6 months in small casks of oak and eight different Brazilian woods (amarelo, amendoim, balsamo, jatoba, louro, pau d'arco, pau d'oleo, and pereiro) in order to determine total phenols, UV-visible spectra differences, and sensorial acceptance. Also used were 200-l casks of oak and pereiro for aging cachaca for 4 years to characterize sensorial descriptors and acceptance. The results suggest that amendoim and pereiro followed by jatobaa are good candidates to replace oak in the construction of cachaca aging casks. It was also observed that when using oak casks as a standard the major changes in the sensory properties occurred in the first 21 months of aging. The principal components analysis of UV-visible absorption spectra of the same beverage stored in casks made of different woods allowed identification of the wood in which the beverage had been aged.

Variabilidade espacial e temporal de parâmetros físico-químicos nos rios Turvo, Preto e Grande no estado de São Paulo, Brasil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Distribution of stream macroalgae in three tropical drainage basins of southeastern Brazil

Three drainage basins belonging to different drainage systems, but in close proximity, were evaluated to compare the distribution of macroalgal communities in the northwest region of São Paulo State, southeastern Brazil. Monthly samplings were carried out from September 1992 through September 1993 in three sites along the main river of each basin. 10 m length cross segments were evaluated for species per cent cover and richness, on both the population and community levels. Selected stream variables were measured: specific conductance, temperature, turbidity, mean cross-sectional area of the reach, current velocity, pH, and oxygen saturation (%). Principal Coordinate Analysis (PCO), chi-square good-of-fitness, and Pearson Product-Moment correlation coefficient were applied to evaluate the distribution of the macroalgal species. The survey resulted in 36 taxa of macroalgae, of which Cyanophyta was the dominant group (17 taxa or 41.7% of the total), followed by Chlorophyta (15 taxa or 41.7%), Rhodophyta (3 taxa or 8.3%) and Chrysophyta (1 taxon or 2.8%). Stigeoclonium helveticum, 'Chantransia' stage of Batrachospermum spp., and B. delicatulum were the most widespread and frequent macroalgae throughout the basins. The analyses showed that conductance and current velocity were the factors most closely related to the distribution of the macroalgal species. Positive correlation between richness and percent cover was determined, which reinforces the patchiness of stream macroalgal distribution.

Distribuição ecológica de comunidades de macroalgas de ambientes lóticos do Parque Nacional de Itatiaia (RJ, MG), Brasil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)