Compendium of projects in the European nanosafety cluster

The demand for research in the area of safety health and environmental management of nanotechnologies is present since a decade and identified by several landmark reports and studies. It is not the intention of this compendium to report on these as they are widely available. It is also not the intention to publish scientific papers and research results as this task is covered by scientific conferences and the peer reviewed press. The intention of the compendium is to bring together researchers, create synergy in their work, and establish links and communication between them mainly during the actual research phase before publication of results. Towards this purpose we find useful to give emphasis to communication of projects strategic aims, extensive coverage of specific work objectives and of methods used in research, strengthening human capacities and laboratories infrastructure, supporting collaboration for common goals and joint elaboration of future plans, without compromising scientific publication potential or IP Rights. These targets are far from being achieved with the publication in its present shape. We shall continue working, though, and hope with the assistance of the research community to make significant progress. We would like to stress that this sector is under development and progressing very fast, which might make some of the statements outdated or even obsolete. Nevertheless it is intended to provide a basis for the necessary future developments. [Ed.]

Guidelines for the use and interpretation of assays for monitoring autophagy.

In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.

Aplicación para analizar el rendimiento de red

En el presente Trabajo de Fin de Carrera se desarrolla una aplicación para analizar el rendimiento de una red Ethernet. El rendimiento se evalúa identificando los equipos que generan el tráfico presente en la red y clasificando este según los protocolos de nivel de enlace, red, transporte o aplicación al que corresponde. Esta aplicación puede ser utilizada tanto para conocer el tráfico del ordenador en el cual se ejecuta, o bien, para evaluar el tráfico en un punto concreto de la red.

Eina d'anàlisi de rendiment d'una xarxa : TaFanet v1.0

Treball de final de carrera que descriu el procés d'implementació de TaFanet v1.0.

Role of the cannabinoid system in the effects induced by nicotine on anxiety-like behaviour in mice

Rationale: Acute behavioural effects and motivational responses induced by nicotine can be modulated by the endocannabinoid system supporting the existence of a physiological interaction between these two systems. Objectives: The present study was designed to examine the possible involvement of the cannabinoid system in the anxiolytic- and anxiogenic-like responses induced by nicotine in mice. Methods: Animals were only exposed once to nicotine. The acute administration of low (0.05, sc) or high (0.8 mg/kg, sc) doses of nicotine produced opposite effects in the elevated plus-maze, i.e., anxiolytic- and anxiogenic-like responses, respectively. The effects of the pretreatment with the CB1 cannabinoid receptor antagonist, rimonabant (0.25, 0.5 and 1 mg/kg, ip), and the cannabinoid agonist, 9-tetrahydrocannabinol (0.1 mg/kg, ip), were evaluated on the anxiolytic- and anxiogenic-like responses induced by nicotine. Results: Rimonabant completely abolished nicotine-induced anxiolytic-like effects and increased the anxiogenic-like responses of nicotine, suggesting an involvement of CB1 receptors in these behavioural responses. On the other hand, 9-tetrahydrocannabinol failed to modify nicotine anxiolytic-like responses, but attenuated its anxiogenic-like effects. In addition the association of non-effective doses of 9-tetrahydrocannabinol and nicotine produced clear anxiolytic-like responses. Conclusions: These results demonstrate that the endogenous cannabinoid system is involved in the regulation of nicotine anxiety-like behaviour in mice, and provide new findings to support the use of cannabinoid antagonists in the treatment of tobacco addiction.

Cross recurrence quantification for cover song identification

There is growing evidence that nonlinear time series analysis techniques can be used to successfully characterize, classify, or process signals derived from realworld dynamics even though these are not necessarily deterministic and stationary. In the present study we proceed in this direction by addressing an important problem our modern society is facing, the automatic classification of digital information. In particular, we address the automatic identification of cover songs, i.e. alternative renditions of a previously recorded musical piece. For this purpose we here propose a recurrence quantification analysis measure that allows tracking potentially curved and disrupted traces in cross recurrence plots. We apply this measure to cross recurrence plots constructed from the state space representation of musical descriptor time series extracted from the raw audio signal. We show that our method identifies cover songs with a higher accuracy as compared to previously published techniques. Beyond the particular application proposed here, we discuss how our approach can be useful for the characterization of a variety of signals from different scientific disciplines. We study coupled Rössler dynamics with stochastically modulated mean frequencies as one concrete example to illustrate this point.

IL28B expression depends on a novel TT/-G polymorphism which improves HCV clearance prediction.

Approximately 3% of the world population is chronically infected with the hepatitis C virus (HCV), with potential development of cirrhosis and hepatocellular carcinoma. Despite the availability of new antiviral agents, treatment remains suboptimal. Genome-wide association studies (GWAS) identified rs12979860, a polymorphism nearby IL28B, as an important predictor of HCV clearance. We report the identification of a novel TT/-G polymorphism in the CpG region upstream of IL28B, which is a better predictor of HCV clearance than rs12979860. By using peripheral blood mononuclear cells (PBMCs) from individuals carrying different allelic combinations of the TT/-G and rs12979860 polymorphisms, we show that induction of IL28B and IFN-γ-inducible protein 10 (IP-10) mRNA relies on TT/-G, but not rs12979860, making TT/-G the only functional variant identified so far. This novel step in understanding the genetic regulation of IL28B may have important implications for clinical practice, as the use of TT/G genotyping instead of rs12979860 would improve patient management.

Projecte desplegament d'una xarxa d'operador de fibra òptica al 22@ i a diverses ciutats del continent

En la primera fase s’interconnectarien a través d’un anell de fibra òptica tres hotels d’una mateixa cadena en l’àrea del 22@ de Barcelona. S’ofereixen els serveis de: intranet, telefonia IP amb interconnexió a la PSTN, videoconferència i internet. Utilitzem VLANs per gestionar la qualitat de servei i la seguretat. El nostre model teòric inclou estimacions de tràfic, comparativa de fabricants, valoració econòmica i diagrama de Gantt d’implantació. A més, ampliem la gamma de serveis amb una xarxa Wimax al 22@ en previsió de futur ús. I augmentem la disponibilitat del servei amb un enllaç ràdio dedicat de backup des d’un dels nodes cap a la torre de Collserola, en la banda dels 18GHz, amb antenes parabòliques. Hem fet càlculs d’atenuació. En la segona i successives fases s’amplia la xarxa de FO a nivell nacional i internacional per a treballar com a operador d’empreses, amb un acurat disseny i selecció dels aparells òptics.

Metro Ethernet -tekniikka: verkko, palvelut ja suunnittelu

Työ aloitettiin perehtymällä Metro Ethernet verkon eriosiin kuten Ethernet-verkkoon, MultiProtocol Label Switching verkkoon ja näiden verkkojen eriosiin. Työssä siis tarkasteltiin lähemmin Ethernet verkon toimintaa sekä sen tarjoamia standardeja kaistannopeuteen, kaapeli materiaaleihin ja kehysrakenteeseen. Tarkasteltiin myös MultiProtocol Label Swit-ching verkon rakennetta, pakettien reititys perusteita pohjautuen Ethernet verkon kehysrakenteeseen, Internet Protocol over MultiProtocol Label Switching tekniikkaa sekä näihin liittyviä alakäsitteitä kuten palvelunlaatu, virtuaaliyhteys, MAC-osoite jne. Kun työssä oli selvitetty Metro Ethernet verkon taustat ja perusteet voitiin siirtyä tutkimaan Metro Area Network ja Metro Ethernet Networks verkkojen tarkempaa rakennetta ja niiden mahdollisuuksia. Koska työn aiheena on Metro Ethernet-verkko, tulee myös tutkia Metro Ethernet Forum järjestöä jossa päätetään kaikki Metro Ethernet-verkkoon liittyvät asiat ja mm. MEF standardit. MEF standardeja on 16 kappaletta ja ne määrittelevät mm. Metro Ethernet verkon palvelut ja verkon arkkitehtuurin. Viimeisenä tutkimusalueena oli kolmen eri verkkolaitteen tutkiminen ja jo valmiina olevien verkkolaitteiden mahdollisuuksien kartoitus. Laitteiden tutkinnassa perehdyttiin Metro Et-hernet-verkko mahdollisuuksiin jokaisen laitevalmistajan tarjoamalla Internet Protocol over MultiProtocol Label Switching tekniikalla. Lopuksi tutkittiin vielä verkkosuunnitelman poh-jan luomista sekä itse suunnitelmaa, aikaisempien tutkimus tulosten pohjalle. Tutkimuksen tuloksena saatiin Metro Ethernet verkon ja käyttökelpoisten verkkolaitteiden tutkimusraportti ja käyttökelpoinen Metro Ethernet-verkkosuunnitelma jota voi käyttää mahdollisesti suoraan pohjana tai ainakin vertailu pohjana käytännön toteutuksessa.

Transfer of MPEG-2 Transport Stream over MPLS

This study examines how MPEG-2 Transport Stream, used in DVB-T video transmission, can be reliably and efficiently transferred to remote locations over an MPLS network. All the relevant technologies used in this scenario are also discussed in the study. This study was done for Digita Oy, which is a major radio and television content distributor in Finland. The theoretical part of the study begins with the introduction to MPLS technology and continues with explanation of IP Multicast and its components. The fourth section discusses MPEG-2 and the formation and content of MPEG-2 Transport Stream. These technologies were studied in relevant literature and RFC documentation. After the theoretical part of the study, the test setup and the test cases are presented. The results of the test cases, and the conclusions that can be drawn based on them, are discussed in the last section of the study. The tests showed that it is possible to transfer digital video quite reliably over an MPLS network using IP Multicast. By configuring the equipment correctly, the recovery time of the network in case of a failure can be shortened remarkably. Also, the unwanted effect of other traffic on the critical video traffic can be eliminated by defining the Quality of Service parameters correctly. There are, however, some issues that need to be tested further before this setup can be used in broadcast networks. Reliable operation of IP Multicast and proper error correction are the main subjects for future testing.

Manifestações Patológicas em Empreendimentos Habitacionais de Baixa Renda Executados em Alvenaria Estrutural: Uma Análise da Relação de Causa e Efeito

A alvenaria estrutural vem ganhando um grande impulso no Brasil ao longo das últimas décadas, sendo cada vez mais utilizada, principalmente em empreendimentos habitacionais de interesse social. No caso específico do Estado do Rio Grande do Sul, nos últimos dois anos, a maioria dos empreendimentos habitacionais de baixa renda foram executados com esse processo construtivo. Por exigência dos órgãos financiadores destes tipos de empreendimentos, as empresas construtoras dos mesmos devem ser possuidoras de certificação do seu sistema de gestão da qualidade. Entretanto, apesar desta certificação, tem-se observado a presença de manifestações patológicas, com predominância de fissuras, nos empreendimentos de baixa renda, por elas executadas. As causas das manifestações patológicas em empreendimentos construídos em alvenaria estrutural têm sido objeto de estudo de diversas pesquisas. Porém, não se fez até então um estudo das possíveis causas destas manifestações do ponto de vista multicausal, envolvendo as várias etapas do processo construtivo. Neste sentido, a presente pesquisa teve como objetivo principal analisar as relações de causa e efeito entre as fissuras dos empreendimentos construídos em alvenaria estrutural e as suas causas, utilizando-se de ferramentas de melhorias da qualidade que adotam uma visão multi-casual, muito utilizadas em outras indústrias. Para este estudo foram utilizados relatórios de monitoramento de execução de empreendimentos que pertencem aos modos de provisão habitacional do Programa de Arrendamento Residencial (PAR) e Imóvel na Planta (IP), no Estado do Rio Grande do Sul, ambos gerenciados pela Caixa Econômica Federal. A pesquisa consistiu em: (a) revisão bibliográfica; (b) levantamento e análise dos dados provenientes dos relatórios, identificando falhas, recomendações técnicas e boas práticas adotadas pelas empresas construtoras; (c) aplicação de um método de análise de relações de causa e efeito composto por ferramentas da qualidade; e (d) geração de mapas de relações de causa e efeito, recomendações para tratamento das principais causas e listagem de algumas boas práticas construtivas. Através desta pesquisa foi possível verificar as principais falhas ao longo do processo construtivo em vários níveis de análise e analisar as relações de causa e efeito entre eles e propor uma priorização de melhorias da qualidade. Com base nesta priorização foi sistematizado um conjunto de recomendações técnicas e de boas práticas que podem ser disseminadas entre as empresas construtoras tendo em vista a melhoria da qualidade dos empreendimentos em estudo.

Avaliação dos Serviços VoIP em Links de Baixa Capacidade com Tráfego Compartilhado de Dados

Esta dissertação descreve os resultados das medições observadas em um dos Laboratórios de uma Operadora de Telecomunicações (LOP), onde foram avaliados e analisados alguns requisitos de QoS em redes de pacotes IP (Internet Protocol). Essas medições foram feitas no âmbito do objetivo desta dissertação que é avaliar formas de prover serviços VoIP (Voice over Internet Protocol) em redes de pacotes conforme a recomendação do padrão FRF.12. Essa rede é assim, uma rede de link de 512kbps que também provê serviços VoIP compartilhados, concorrentemente com dados e serviços multimídia. Dos ítens analisados destacam-se: Análise de Codecs; QoS (Quality Of Service) Diffserv; Compressão de cabeçalho RTP (Real Time Protocol) - cRTP; Fragmentação com intercalação - LFI; Comportamento da Rede em situações diversas; a adequação do software free Multi Generator (MGEN) de geração - medição - coleta de dados, em redes. A análise foi, essencialmente, em enlace Frame Relay nos CPE (Customer Premise Equipment), passando pelo Backbone IP VPN / MPLS Multicast, pois o Frame Relay Fórum v12 (FRF.12) dá suporte à intercalação de voz entre os pacotes de dados. O FRF.12 é indispensável, pois este esta dissertação tem como objetivo realizar um conjuntos de testes e medidas que avaliam a aplicação dos serviços VoIP em links de baixa capacidades com trafego de dados compartilhados. Para oferecer esse serviço e de qualidade é necessário fragmentar e intercalar frames de voz entre os pacotes de dados usando o FRF.12. Depois do estudo teórico das recomendações, normas de padronização internacional e dos fabricantes, foram realizados testes que resultam na validação prática de toda a teoria outrora analisada através de testes específicos que comprovam em definitivo a viabilidade das aplicações VoIP em uma rede de enlace de baixa velocidade. Feitos esses testes chegou-se a conclusão de que em determinados casos não se revela necessário nem preocupante o aumento da banda para se puder prover determinados serviços. Na sequência dos testes foram também avaliados o desempenho, a ocupação da banda e a eficácia dos equipamentos - softwares. Da bancada dos testes e medições, provou-se o seguinte: que de fato consegue-se melhor otimização da banda ao realizar compressão do cabeçalho cRTP; que de fato a fragmentação de pacote FTP (File Transfer Protocol) com intercalação de pacotes VoIP faz reduzir o delay e jitter1 para as aplicações de tempo real; que de fato a habilitação de QoS Intserv provê classificação e faz diferenciação dos tráfegos, e que o CODEC G729 apresenta melhor adequação em lidar com aplicações VoIP em routers2 CISCO, disponível em CRT (Centro de referência Tecnológica) de uma LOP.

Entorn de programació pel robot Stäubli mitjantçant MatLab, aplicació a un sistema de recol·lecció de peces basat en visió artificial

Els objectius del projecte són: realitzar un intèrpret de comandes en VAL3 que rebi les ordres a través d’una connexió TCP/IP; realitzar una toolbox de Matlab per enviar diferents ordres mitjançant una connexió TCP/IP; adquirir i processar mitjançant Matlab imatges de la càmera en temps real i detectar la posició d’objectes artificials mitjançant la segmentació per color i dissenyar i realitzar una aplicació amb Matlab que reculli peces detectades amb la càmera. L’abast del projecte inclou: l’estudi del llenguatge de programació VAL3 i disseny de l’ intèrpret de comandes, l’estudi de les llibreries de Matlab per comunicació mitjançant TCP/IP, per l’adquisició d’imatges, pel processament d’imatges i per la programació en C; el disseny de la aplicació recol·lectora de peces i la implementació de: un intèrpret de comandes en VAL3, la toolbox pel control del robot STAUBLI en Matlab i la aplicació recol·lectora de peces mitjançant el processament d’imatges en temps real també en Matlab

Modulation of inflammatory pathways by the HIV protease inhibitors

Les inhibiteurs de la protéase du VIH (IP) constituent une des classes de traitements antirétroviraux parmi les plus utilisés au cours de l'infection par le VIH. Leur utilisation est associée à divers effets secondaires, notamment la dyslipidémie, la résistance à l'insuline, la lipodystrophie et certaines complications cardio-vasculaires. Ces molécules ont également des propriétés anti-tumorales, décrites chez des patients non infectés par le VIH. Pourtant, les mécanismes moléculaires à l'origine de ces effets annexes restent méconnus. Dans ce travail, nous démontrons que les IP, comme le Nelfinavir, le Ritonavir, le Lopinavir, le Saquinavir et l'Atazanavir, entrainent la production d'interleukine-lß (IL-lß), une puissante cytokine pro-inflammatoire, connue pour son rôle central dans les maladies inflammatoires. La sécrétion d'IL-lß requiert la formation de l'inflammasome, un complexe protéique intracellulaire servant de plateforme d'activation de la caspase-1 et, par la suite, à la maturation protéolytique de certaines cytokines, dont l'IL-lß. Dans les macrophages murins en culture primaire, ainsi que dans une lignée de monocytes humains, nous démontrons que les IP augmentent la maturation et la sécrétion de l'IL-lß via l'induction d'un inflammasome dépendant de ASC. De plus, nous établissons que les IP induisent spécifiquement l'activation de AIM2, un inflammasome détectant la présence intracytosolique d'ADN viral ou bactérien. Nos résultats démontrent l'existence d'une nouvelle voie d'activation de l'inflammasome AIM2 par un signal endogène dont la nature reste à définir. Ces données suggèrent que AIM2 pourrait jouer un rôle important dans la promotion de l'activité anti-tumorale ainsi que dans les autres effets annexes observés chez les patients traités par IP. -- HIV protease inhibitors (Pis) are among the most often used classes of antiretroviral drugs for HIV infection. Treatment of patients with HIV-PIs is associated with the development of metabolic side effects including dyslipidemia, insulin resistance, lipodystrophy and cardiovascular complications. In addition, these drugs have been reported to have anti¬tumoral properties in non-infected patients, however the molecular mechanisms causing these off-target effects are still unclear. Here we show that the HIV-PIs, such as Nelfinavir, Ritonavir, Lopinavir, Saquinavir and Atazanavir, activate the production of interleukin-lß (IL-lß), a potent pro-inflammatory cytokine that plays a central role in the pathogenesis of inflammatory diseases. The release of IL-lß depends on the activation of the inflammasome, a multiprotein complex that serves as a platform for caspase-1 activation and subsequent proteolytic maturation of cytokines including IL-lß. We found that in mouse primary macrophages as well as in a human monocytic cell line, the HIV-PIs augment the maturation and secretion of IL-lß by triggering an ASC-dependent inflammasome activation. Moreover, we show that the HIV-PIs specifically engage AIM2, a recently characterized inflammasome -forming protein that was described to detect the cytosolic release of bacterial and viral DNA. Our findings demonstrate a new pathway of activation of the AIM2 inflammasome by a yet to be defined endogenous signal and may suggest a possible role for AIM2 in promoting anti¬tumoral activity and off-target effects observed in HIV-PIs treated patients.