Organisation structurale du noyau et de microtubules de cellules de mammifères observés par cryo-microscopie électronique de sections hydratées

RESUME L'architecture nucléaire ainsi que l'ultrastructure des microtubules ont été abondamment étudiées par des méthodes cytochimiques utilisant des échantillons fixés chimiquement, enrobés dans des résines ou fixés à basse température. Les échantillons fixés à basse température pouvant aussi avoir été substitués, déshydratés et enrobés dans des résines pour la plupart hydrophiles. Ici, nous avons étendu ces études en utilisant la microscopie électronique effectuée sur des sections hydratées (CEMOVIS) permettant d'observer les échantillons dans un état le plus proche de leur état natif. De plus, nous avons effectué de la tomographie électronique sur des sections hydratées (TOVIS) afin d'obtenir une vision tridimensionnelle de : 1) la périphérie du noyau et de la région périchromatinienne et 2) de la lumière des microtubules. Concernant l'architecture nucléaire Nos observations montrent que le nucléole et la chromatine condensée sont facilement visualisés grâce à la texture spécifique qu'ils arborent. Au contraire, la visualisation de domaines nucléaires importants et spécialement ceux qui contiennent des ribonucléoprotéines, est rendue difficile, à cause du faible contraste qui caractérise l'espace interchromatinien. Ceci est essentiellement dû à la quantité d'information présente dans le volume de la section qui semble être superposée, lorsque observée sur des micrographies en deux dimensions. La tomographie nous a permis de mieux visualiser les différentes régions du noyau. Les mottes de chromatine condensée sont décorées à leur périphérie (région périchromatinienne), par nombre de fibrilles et granules. Des tunnels d'espace interchromatinien sont occasionnellement observés en train de traverser des régions de chromatine condensée favorisant l'accès aux pores nucléaires. Enfin, nous avons pu, au niveau d'un pore unique, observer la plupart des structures caractéristiques du complexe de pore nucléaire. Concernant l'ultrastructure des microtubules: Nous avons démontré que la polarité d'un microtubule observé in situ en section transversale, par CEMOVIS, est directement déduite de l'observation de la chiralité de ses protofilaments. Cette chiralité, a été établie précédemment comme étant liée à la morphologie des sous unités de tubuline. La tomographie électronique effectuée sur des sections hydratées, nous a permis d'observer les microtubules dans leur contexte cellulaire avec une résolution suffisante pour visualiser des détails moléculaires, comme les monomères de tubuline. Ainsi, des molécules n'ayant pas encore été caractérisées, ont été observées dans la lumière des microtubules. Ces observations ont été effectuées autant sur des cellules observées en coupe par CEMOVIS que sur des cellules congelées dans leur totalité par immersion dans un bain d'éthane liquide. Enfin, nous avons montré que les microtubules étaient aussi de formidables objets, permettant une meilleure compréhension des artéfacts de coupe occasionnés lors de la préparation des échantillons par CEMOVIS. Les buts des études qui seront menées â la suite de ce travail seront de 1) essayer de localiser des domaines nucléaires spécifiques par des approches cytochimiques avant la congélation des cellules. 2) Appliquer des méthodes de moyennage afin d'obtenir un modèle tridimensionnel de la structure du complexe de pore nucléaire dans son contexte cellulaire. 3) Utiliser des approches biochimiques afin de déterminer la nature exacte des particules qui se trouvent dans la lumière des microtubules. ABSTRACT Nuclear architecture as well as microtubule ultrastructure have been extensively investigated by means of different methods of ultrastructural cytochemistry using chemically fixed and resin embedded samples or following cryofixation, cryosubstitution and embedding into various, especially partially hydrophilic resins. Here, we extend these studies using cryoelectron microscopy of vitreous sections (CEMOVIS) which allows one to observe the specimen as close as possible to its native state. Furthermore, we applied cryoelectron tomography of vitreous sections (TOVIS) in order to obtain athree-dimensional view of: 1) the nuclear periphery, and of the perichromatin region, and 2) the microtubule lumen. Concerning the nuclear architecture: Our observations show that nucleoli and condensed chromatin are well recognisable due to their specific texture. Conversely, the visualisation of other important nuclear domains, especially those containing ribonucleoproteins, is seriously hampered by a generally low contrast of the interchromatin region. This is mainly due to the plethora of information superposed in the volume of the section observed on two-dimensional micrographs. Cryoelectron tomography allowed us to better visualise nuclear regions. Condensed chromatin clumps are decorated on their periphery, the perichromatin region, by numerous fibrils and granules. Tunnels of interchromatin space can occasionally be found as crossing condensed chromatin regions, thus, allowing the access to nuclear pores. Finally, we were able to use TOVIS to directly distinguish most of the nuclear pore complex structures, at the level of a single pore. Concerning the microtubule ultrastructure: We have demonstrated that the polarity of across-sectioned microtubule observed in situ by CEMOVIS wás directly deducible from the visualisation of the tubulin protofiíaments' chirality. This chirality has been established before as related to the shape. of the tubulin subunits. Cryoelectron tomography allowed us to observe microtubules in their cellular context at a resolution sufficient to resolve molecular details such as their tubulin monomers. In this way, uncharacterized molecules were visualised in the microtubule lumen. These observations were made either on samples prepared by CEMOVIS or plunge freezing of whole cells. Finally, we have shown that microtubules are also relevant objects for the understanding of cutting artefacts, when performing CEMOVIS. The goals of our further studies will be to: 1) try to speciifically target different nuclear domains by cytochemical approaches in situ, prior to cryofixation. 2) Apply averaging methods in order to obtain a three-dimensional model of the nuclear pore complex at work, in its cellular context. 3) Use biochemical analysis combined in a second time to immunocytochemical approaches, to determine the exact nature of the microtubule's luminal particles.

Sense of time in children with Attention-Deficit/Hyperactivity Disorder (ADHD) : a comparative study

Parents of children with attention-deficit/hyperactivity disorder (ADHD) frequently report that their children have a poor sense of time. Several studies looking at the perception of time mentioned a form of temporal myopia. The present study investigates the sense of time in children with ADHD. Twenty-two French-speaking Swiss children with ADHD and 22 controls between the ages of 6 and 13 years were tested using a conventional time knowledge questionnaire and two Piagetian time conservation tasks. Parents were asked to complete the "It's about time" questionnaire. Better performance was observed in matched control group children than in children with ADHD on a conventional time knowledge questionnaire. For children under 10 years of age, the two Piagetian time conservation tasks were able to differentiate children with and without ADHD. Parents of ADHD children reported more frequently that their children had time-related difficulties in daily activities. This study suggests that children with ADHD take longer to develop several time-related abilities.

Estimation of time of death in relation to gastric contents

Introduction: Estimation of the time since death based on the gastric content is still a controversy subject. Many studies have been achieved leaving the same incertitude: the intra- and inter-individual variability. Aim: After a homicidal case where a specialized gastroenterologist was cited to estimate the time of death based on the gastric contents and his experience in clinical practice. Consequently we decided to make a review of the scientific literature to see if that method was more reliable nowadays. Material and methods: We chose articles from 1979 that describe the estimation of the gastric emptying rate according to several factors and the forensic articles about the estimation of the time of death in relation with the gastric content. Results: Most of the articles cited by the specialized gastroenterologist were studies about living healthy people and the effects of several factors (medication, supine versus upside-down position, body mass index or different type of food). Forensic articles frequently concluded that the estimation of the time since death by analyzing the gastric content can be used but not as the unique method. Conclusion: Estimation of the time since death by analyze of the gastric contents is a method that can be used nowadays. But it cannot be the only method as the inter- and intra-individual variability remains an important bias.

What new cell biology findings could bring to therapeutics: is it time for a phenome-project in Toxoplasma gondii?

"If you know the enemy and know yourself, you need not fear the result of a hundred battles. If you know yourself but not the enemy, for every victory gained you will also suffer a defeat" (SunTzu the Art of War, 544-496 BC). Although written for the managing of conflicts and winning clear victories, this basic guideline can be directly transferred to our battle against apicomplexan parasites and how to focus future basic research in order to transfer the gained knowledge to a therapeutic intervention stratey. Over the last two decades the establishment of several key-technologies, by different groups working on Toxoplasma gondii, made this important human pathogen accessible to modern approaches in molecular cell biology. In fact more and more researchers get attracted to this easy accessible model organism to study specific biological questions, unique to apicomplexans. This fascinating, unique biology might provide us with new therapeutic options in our battle against apicomplexan parasites by finding its Achilles' heel. In this article we argue that in the absence of a powerful high throughput technology for the characterisation of essential gene of interests a coordinated effort should be undertaken to convert our knowledge of the genome into one of the phenome.

Fine-tuning the space, time, and host distribution of mycobacteria in wildlife.

Background. We describe the diversity of two kinds of mycobacteria isolates, environmental mycobacteria and Mycobacterium bovis collected from wild boar, fallow deer, red deer and cattle in Doñana National Park (DNP, Spain), analyzing their association with temporal, spatial and environmental factors. Results. High diversity of environmental mycobacteria species and M. bovis typing patterns (TPs) were found. When assessing the factors underlying the presence of the most common types of both environmental mycobacteria and M. bovis TPs in DNP, we evidenced (i) host species differences in the occurrence, (ii) spatial structuration and (iii) differences in the degree of spatial association of specific types between host species. Co-infection of a single host by two M. bovis TPs occurred in all three wild ungulate species. In wild boar and red deer, isolation of one group of mycobacteria occurred more frequently in individuals not infected by the other group. While only three TPs were detected in wildlife between 1998 and 2003, up to 8 different ones were found during 2006-2007. The opposite was observed in cattle. Belonging to an M. bovis-infected social group was a significant risk factor for mycobacterial infection in red deer and wild boar, but not for fallow deer. M. bovis TPs were usually found closer to water marshland than MOTT. Conclusions. The diversity of mycobacteria described herein is indicative of multiple introduction events and a complex multi-host and multi-pathogen epidemiology in DNP. Significant changes in the mycobacterial isolate community may have taken place, even in a short time period (1998 to 2007). Aspects of host social organization should be taken into account in wildlife epidemiology. Wildlife in DNP is frequently exposed to different species of non-tuberculous, environmental mycobacteria, which could interact with the immune response to pathogenic mycobacteria, although the effects are unknown. This research highlights the suitability of molecular typing for surveys at small spatial and temporal scales.

Preferential transcription of Paracoccidioides brasiliensis genes: host niche and time-dependent expression

Paracoccidioides brasiliensis causes infection through inhalation by the host of airborne propagules from the mycelium phase of the fungus. This fungus reaches the lungs, differentiates into the yeast form and is then disseminated to virtually all parts of the body. Here we review the identification of differentially-expressed genes in host-interaction conditions. These genes were identified by analyzing expressed sequence tags (ESTs) from P. brasiliensis cDNA libraries. The P. brasiliensis was recovered from infected mouse liver as well as from fungal yeast cells incubated in human blood and plasma, mimicking fungal dissemination to organs and tissues and sites of infection with inflammation, respectively. In addition, ESTs from a cDNA library of P. brasiliensis mycelium undergoing the transition to yeast were previously analyzed. Together, these studies reveal significant changes in the expression of a number of genes of potential importance in the host-fungus interaction. In addition, the unique and divergent representation of transcripts when the cDNA libraries are compared suggests differential gene expression in response to specific niches in the host. This analysis of gene expression patterns provides details about host-pathogen interactions and peculiarities of sites within the host.

Time-series regression models to study the short-term effects of environmental factors on health

Time series regression models are especially suitable in epidemiology for evaluating short-term effects of time-varying exposures on health. The problem is that potential for confounding in time series regression is very high. Thus, it is important that trend and seasonality are properly accounted for. Our paper reviews the statistical models commonly used in time-series regression methods, specially allowing for serial correlation, make them potentially useful for selected epidemiological purposes. In particular, we discuss the use of time-series regression for counts using a wide range Generalised Linear Models as well as Generalised Additive Models. In addition, recently critical points in using statistical software for GAM were stressed, and reanalyses of time series data on air pollution and health were performed in order to update already published. Applications are offered through an example on the relationship between asthma emergency admissions and photochemical air pollutants

Clinical presentation and time-course of postoperative venous thromboembolism: Results from the RIETE Registry

There is little literature about the clinical presentation and time-course of postoperative venous thromboembolism (VTE) in different surgical procedures. RIETE is an ongoing, prospective registry of consecutive patients with objectively confirmed, symptomatic acute VTE. In this analysis, we analysed the baseline characteristics, thromboprophylaxis and therapeutic patterns, time-course, and three-month outcome of all patients with postoperative VTE. As of January 2006, there were 1,602 patients with postoperative VTE in RIETE: 393 (25%) after major orthopaedic surgery (145 elective hip arthroplasty, 126 knee arthroplasty, 122 hip fracture); 207 (13%) after cancer surgery; 1,002 (63%) after other procedures. The percentage of patients presenting with clinically overt pulmonary embolism (PE) (48%, 48%, and 50% respectively), the average time elapsed from surgery to VTE (22 +/- 16, 24 +/- 16, and 21 +/- 15 days, respectively), and the three-month incidence of fatal PE (1.3%, 1.4%, and 0.8%, respectively), fatal bleeding (0.8%, 1.0%, and 0.2%, respectively), or major bleeding (2.3%, 2.9%, and 2.8%, respectively) were similar in the three groups. However, the percentage of patients who had received thromboprophylaxis (96%, 76% and 52%, respectively), the duration of prophylaxis (17 +/- 9.6, 13 +/- 8.9, and 12 +/- 11 days, respectively) and the mean daily doses of low-molecular-weight heparin (4,252 +/- 1,016, 3,260 +/- 1,141, and 3,769 +/- 1,650 IU, respectively), were significantly lower in those undergoing cancer surgery or other procedures. In conclusion, the clinical presentation, time-course, and three-month outcome of VTE was similar among the different subgroups of patients, but the use of prophylaxis in patients undergoing cancer surgery or other procedures was suboptimal.

Semi-online neural-Q_leaming for real-time robot learning

Reinforcement learning (RL) is a very suitable technique for robot learning, as it can learn in unknown environments and in real-time computation. The main difficulties in adapting classic RL algorithms to robotic systems are the generalization problem and the correct observation of the Markovian state. This paper attempts to solve the generalization problem by proposing the semi-online neural-Q_learning algorithm (SONQL). The algorithm uses the classic Q_learning technique with two modifications. First, a neural network (NN) approximates the Q_function allowing the use of continuous states and actions. Second, a database of the most representative learning samples accelerates and stabilizes the convergence. The term semi-online is referred to the fact that the algorithm uses the current but also past learning samples. However, the algorithm is able to learn in real-time while the robot is interacting with the environment. The paper shows simulated results with the "mountain-car" benchmark and, also, real results with an underwater robot in a target following behavior

Towards a real-time vision-based navigation system for a small-class UUV

This paper deals with the problem of navigation for an unmanned underwater vehicle (UUV) through image mosaicking. It represents a first step towards a real-time vision-based navigation system for a small-class low-cost UUV. We propose a navigation system composed by: (i) an image mosaicking module which provides velocity estimates; and (ii) an extended Kalman filter based on the hydrodynamic equation of motion, previously identified for this particular UUV. The obtained system is able to estimate the position and velocity of the robot. Moreover, it is able to deal with visual occlusions that usually appear when the sea bottom does not have enough visual features to solve the correspondence problem in a certain area of the trajectory

Matrix-assisted laser desorption ionization time-of-flight mass spectrometry and PCR-based rapid diagnosis of Staphylococcus aureus bacteraemia.

Effective empirical treatment is of paramount importance to improve the outcome of patients with Staphylococcus aureus bacteraemia. We aimed to evaluate a PCR-based rapid diagnosis of methicillin resistance (GeneXpert MRSA) after early detection of S. aureus bacteraemia using matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS). Patients with a first episode of S. aureus bacteraemia identified using MALDI-TOF MS were randomized in a prospective interventional open study between October 2010 and August 2012. In the control group, antibiotic susceptibility testing was performed after MALDI-TOF MS identification on blood culture pellets. In the intervention group, a GeneXpert MRSA was performed after S. aureus identification. The primary outcome was the performance of GeneXpert MRSA directly on blood cultures. We then assessed the impact of early diagnosis of methicillin resistance on the empirical treatment. In all, 197 episodes of S. aureus bacteraemia were included in the study, of which 106 were included in the intervention group. Median time from MALDI-TOF MS identification to GeneXpert MRSA result was 97 min (range 25-250). Detection of methicillin resistance using GeneXpert MRSA had a sensitivity of 99% and a specificity of 100%. There was less unnecessary coverage of MRSA in the intervention group (17.1% versus 29.2%, p 0.09). GeneXpert MRSA was highly reliable in diagnosing methicillin resistance when performed directly on positive blood cultures. This could help to avoid unnecessary prescriptions of anti-MRSA agents and promote the introduction of earlier adequate coverage in unsuspected cases.

A new approach to real time traffic sign recognition based on colour information

The automatic interpretation of conventional traffic signs is very complex and time consuming. The paper concerns an automatic warning system for driving assistance. It does not interpret the standard traffic signs on the roadside; the proposal is to incorporate into the existing signs another type of traffic sign whose information will be more easily interpreted by a processor. The type of information to be added is profuse and therefore the most important object is the robustness of the system. The basic proposal of this new philosophy is that the co-pilot system for automatic warning and driving assistance can interpret with greater ease the information contained in the new sign, whilst the human driver only has to interpret the "classic" sign. One of the codings that has been tested with good results and which seems to us easy to implement is that which has a rectangular shape and 4 vertical bars of different colours. The size of these signs is equivalent to the size of the conventional signs (approximately 0.4 m2). The colour information from the sign can be easily interpreted by the proposed processor and the interpretation is much easier and quicker than the information shown by the pictographs of the classic signs

Documenting a time-bound, circular view of hierarchies: a microanalysis of parent-infant dyadic interaction.

This article presents a new theory that separates the levels of communication and relates them circularly, namely, by separating time from space/meaning variables. Documenting this proposition requires sequential microdescriptions--a far-out project in the field of family therapy. In an extensive study of clinical and nonclinical families, starting with available microanalytic data on nonverbal parent-infant dialogue, distinct time organizations have been found to modify the degree of circularity between the levels of interaction according to the observed types of engagement, that is, consensual, conflictual, and paradoxical. The double description of the dyad as a totality versus the dyad as a framing/developing organization imparts crucial information on how development proceeds in dyadic, co-evolutive systems, and presumably in larger ones too. In this perspective, a model is elaborated and then applied to a case description in our therapeutic consultation.