Soil and biomass mercury emissions during a prescribed fire in the Amazonian rain forest

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Biotechnological Utilization of Biodiesel-Derived Glycerol for the Production of Ribonucleotides and Microbial Biomass

Ten yeast strains were evaluated concerning their capabilities to assimilate biodiesel-derived glycerol in batch cultivation. The influence of glycerol concentration, temperature, pH and yeast extract concentration on biomass production was studied for the yeast selected. Further, the effect of agitation on glycerol utilization by the yeast Hansenula anomala was also studied. The yeast H. anomala CCT 2648 showed the highest biomass yield (0.30 g g(-1)) and productivity (0.19 g L-1 h(-1)). Citric acid, succinic acid, acetic acid and ethanol were found as the main metabolites produced. The increase of yeast extract concentration from 1 to 3 g L-1 resulted in high biomass production. The highest biomass concentration (21 g L-1), yield (0.45 g g(-1)) and productivity (0.31 g L-1 h(-1)), as well as ribonucleotide production (13.13 mg g(-1)), were observed at 700 rpm and 0.5 vvm. These results demonstrated that glycerol from biodiesel production process showed to be a feasible substrate for producing biomass and ribonucleotides by yeast species.

Effects of in situ freezing on soil net nitrogen mineralization and net nitrification in fertilized grassland of northern China

Effects of soil freezing on nitrogen (N) mineralization have been the subject of increased attention in the ecological literature, though fewer studies have examined N mineralization responses to successive mild freezing, severe freezing and cyclic freeze–thaw events. Even less is known about relationships of responses to soil N status. This study measured soil N mineralization and nitrification in the field along an experimental N gradient in a grassland of northern China during the dormant season (October 2005–April 2006), a period in which freezing naturally occurs. Net N mineralization exhibited great temporal variability, with nitrification being the predominant N transformation process. Soil microbial biomass C and N and extractable NH4 + pools declined by 40, 52, and 56%, respectively, in April 2006, compared with their initial concentrations in October 2005; soil NO3– pools increased by 84%. Temporal patterns of N mineralization were correlated with soil microbial biomass C and N. N mineralization and nitrification increased linearly with added N. Microbial biomass C in treated soils increased by 10% relative to controls, whereas microbial N declined by 9%. Results further suggest that freezing events greatly alter soil N dynamics in the dormant season at this site, with considerable available N accumulating during this period.

Analysis of spatial microbial properties from experimental plots of the Jena experiment (September 2010)

The study was carried out on the main plots (Main Experiment) of a large grassland biodiversity experiment, the Jena Experiment. In the main experiment, 82 grassland plots of 20 x 20 m were established from a pool of 60 species belonging to four functional groups (grasses, legumes, tall and small herbs). In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 4, 8, 16 and 60 species) and functional richness (1, 2, 3, 4 functional groups). Plots were maintained by bi-annual weeding and mowing. This data set consists of standard deviation (SD), mean and stability (stab) of soil microbial basal respiration (µl O2/h/g dry soil) and microbial biomass carbon (µg C/g dry soil). Data were derived by taking soil samples and measuring basal and substrate-induced microbial respiration with an oxygen-consumption apparatus. Samples for calculating the spatial stability of soil microbial properties were taken on the 20th of September in 2010. Oxygen consumption of soil microorganisms in fresh soil equivalent to 3.5 g dry weight was measured at 22°C over a period of 24 h. Basal respiration (µlO2/g dry soil/h) was calculated as mean of the oxygen consumption rates of hours 14 to 24 after the start of measurements. Substrate- induced respiration was determined by adding D-glucose to saturate catabolic enzymes of microorganisms according to preliminary studies (4 mg g-1 dry soil solved in 400 µl deionized water). Maximum initial respiratory response (µl O2/g dry soil/ h) was calculated as mean of the lowest three oxygen consumption values within the first 10 h after glucose addition. Microbial biomass carbon (µg C/g dry soil) was calculated as 38 × Maximum initial respiratory response according to prelimiray studies.

Analysis of temporal microbial properties from experimental plots of the Jena experiment (2003-2014)

The study was carried out on the main plots (Main Experiment) of a large grassland biodiversity experiment, the Jena Experiment. In the main experiment, 82 grassland plots of 20 x 20 m were established from a pool of 60 species belonging to four functional groups (grasses, legumes, tall and small herbs). In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 4, 8, 16 and 60 species) and functional richness (1, 2, 3, 4 functional groups). Plots were maintained by bi-annual weeding and mowing. This data set consists of standard deviation (SD), mean and stability (stab) of soil microbial basal respiration (µl O2/h/g dry soil) and microbial biomass carbon (µg C/g dry soil). Data were derived by taking soil samples and measuring basal and substrate-induced microbial respiration with an oxygen-consumption apparatus. Samples for calculating the temporal stability were taken every year in May/June from 2003 to 2014, except in 2005. Oxygen consumption of soil microorganisms in fresh soil equivalent to 3.5 g dry weight was measured at 22°C over a period of 24 h. Basal respiration (µlO2/g dry soil/h) was calculated as mean of the oxygen consumption rates of hours 14 to 24 after the start of measurements. Substrate- induced respiration was determined by adding D-glucose to saturate catabolic enzymes of microorganisms according to preliminary studies (4 mg g-1 dry soil solved in 400 µl deionized water). Maximum initial respiratory response (µl O2/g dry soil/h) was calculated as mean of the lowest three oxygen consumption values within the first 10 h after glucose addition. Microbial biomass carbon (µg C/g dry soil) was calculated as 38 × Maximum initial respiratory response according to prelimiray studies.

Effects of hydrocarbon contamination on soil microbial community and enzyme activity

Acknowledgment I would like to gratefully acknowledge the government of Saudi Arabia for the scholarship and financial support.

(Appendix A) Pigment content, microbial biomass and activity, and grain size characteristics in caged and control sites of the Arctic long-term observatory HAUSGARTEN

Present theories of deep-sea community organization recognize the importance of small-scale biological disturbances, originated partly from the activities of epibenthic megafaunal organisms, in maintaining high benthic biodiversity in the deep sea. However, due to technical difficulties, in situ experimental studies to test hypotheses in the deep sea are lacking. The objective of the present study was to evaluate the potential of cages as tools for studying the importance of epibenthic megafauna for deep-sea benthic communities. Using the deep-diving Remotely Operated Vehicle (ROV) "VICTOR 6000", six experimental cages were deployed at the sea floor at 2500 m water depth and sampled after 2 years (2y) and 4 years (4y) for a variety of sediment parameters in order to test for caging artefacts. Photo and video footage from both experiments showed that the cages were efficient at excluding the targeted fauna. The cage also proved to be appropriate to deep-sea studies considering the fact that there was no fouling on the cages and no evidence of any organism establishing residence on or adjacent to it. Environmental changes inside the cages were dependent on the experimental period analysed. In the 4y experiment, chlorophyll a concentrations were higher in the uppermost centimeter of sediment inside cages whereas in the 2y experiment, it did not differ between inside and outside. Although the cages caused some changes to the sedimentary regime, they are relatively minor compared to similar studies in shallow water. The only parameter that was significantly higher under cages at both experiments was the concentration of phaeopigments. Since the epibenthic megafauna at our study site can potentially affect phytodetritus distribution and availability at the seafloor (e.g. via consumption, disaggregation and burial), we suggest that their exclusion was, at least in part, responsible for the increases in pigment concentrations. Cages might be suitable tools to study the long-term effects of disturbances caused by megafaunal organisms on the diversity and community structure of smaller-sized organisms in the deep sea, although further work employing partial cage controls, greater replication, and evaluating faunal components will be essential to unequivocally establish their utility.

WARMING AND CHRONIC HIGH NUTRIENT MANIPULATIONS YIELD DIFFERING LEGACY EFECTS ON THE SOIL MICROBIAL COMMUNITY AND NUTRIENT POOLS IN THE LOW ARCTIC

Climate warming is predicted to increase summer air temperatures in the Arctic, warming soils and enhancing microbial decomposition of soil organic matter. Given the size of the soil carbon stores in the Arctic, even a fraction of its release as CO2 to the atmosphere could result in a positive feedback to climate warming. Fertilizers have been used in the past to quickly increase soil solution nutrients pools to mimic predicted concentrations under climate warming. However, because it may have inadvertent affects on the soil microbial community, fertilizer-induced patterns in microbial decomposition may be unrealistic. This study aimed to better understand the proposed mechanism of enhanced microbial decomposition under nutrient addition and warming treatments to discern whether warming alone is enough to stimulate enhanced microbial decomposition, or if nutrients in excess (i.e. chronic high nutrient additions) are necessary to yield such a response. I investigated the impacts of 10 years of greenhouse summer warming, chronic low nutrient factorial addition (5 g N and 1g P m-2 year-1, respectively), and chronic high nutrient factorial addition (10 g N and 5g P m-2 year-1, respectively) treatments on a mesic birch hummock tundra ecosystem near Daring Lake, NWT, Canada. Soil microbial nutrient pools, soil solution nutrient pools, and microbial community structure were measured in the upper organic, lower organic, and uppermost mineral soil depth intervals of all treatment plots in Spring 2014. Interestingly, the low nutrient additions did not yield any significant trends, yet the warming treatment increased soil bacterial richness suggesting a legacy effect of warming from the previous summers. Enhanced microbial nutrient uptake occurred only in the high nutrient addition treatments, and did not significantly alter soil carbon at least within the ten year period of this experiment. Together, these results and the absence of significant impacts of the low nutrient and greenhouse warming treatments suggests that nutrient and carbon cycling in these low arctic soils may be resilient against climate warming, at least over the initial decades.

Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database

Microbial inhabitants of soils are important to ecosystem and planetary functions, yet there are large gaps in our knowledge of their diversity and ecology. The ‘Biomes of Australian Soil Environments’ (BASE) project has generated a database of microbial diversity with associated metadata across extensive environmental gradients at continental scale. As the characterisation of microbes rapidly expands, the BASE database provides an evolving platform for interrogating and integrating microbial diversity and function.

The Ecology of Urbanization: A Study of Soil Microbial Community Rosponse

Urbanization is associated with global biodiversity loss of macrophauna and flora through direct and indirect mechanisms, but to date few studies have examined urban soil microbes. Although there are numerous studies on the influence of agricultural management on soil microbial community composition, there has been no global-scale study of human control over urban soil microbial communities. This thesis extends the literature of urban ecology to include soil microbial communities by analyzing soils that are part of the Global Urban Soil Ecology and Education Network (GLUSEEN). Chapter 1 sets the context for urban ecology; Chapters 2 addresses patterns of community assembly, biodiversity loss, and the phylogenetic relationships among community members; Chapter 3 addresses the metabolic pathways that characterize microbial communities existing under different land-uses across varying geographic scales; and Chapter 4 relates Chapter 2 and 3 to one another and to evolutionary theory, tackling assumptions that are particular to microbial ecology.

内蒙古高原成熟和退化羊草草原群落物种功能特性与土壤微生物量C、N、P对氮素添加响应

氮素是大多数陆地生态系统初级生产力的主要限制因子。由于人类的工业和农业生产活动不断加剧，导致全球性氮沉降增加，使大多数生态系统氮素的可获得性增强。从而降低或消除了氮素对生态系统的限制作用，加速了生态系统生物地球化学过程，对物种多样性和生态系统结构与功能产生了显著的影响。但由于成土母质、气候条件、地形地貌、植被组成等的差异，不同生态系统类型对氮素增加的响应也不尽相同。欧洲和北美一些发达国家地区对于草地生态系统对于全球性氮沉降增加响应进行了较全面的研究，对于分布广泛的欧亚大陆草原研究相对不足。 本文研究选择对于欧亚大陆草原较具代表性的成熟羊草草原群落及该群落的退化类型为研究对象，从1999年开始，在这两类群落中选取地形相对平缓均一，植被组成一致的地段设置了施肥小区并进行持续氮素添加实验。本文研究了成熟和退化羊草草原群落物种功能特性与土壤微生物量C、N、P对氮素添加响应。 羊草群落中6种主要植物的地上生物量、种群密度、比叶面积、叶氮和叶绿素含量对于氮素添加响应以及各指标之间相关关系的分析表明：比叶面积、基于质量的叶片含氮量和叶绿素含量、叶绿素a和叶绿素b的比值等叶片水平上物种功能特性间的相互作用，共同影响和决定了种群密度和地上生物量对氮素添加的响应。羊草通过提高比叶面积、叶片叶绿素含量和含氮量、种群密度及个体生物量等多重调节功能对氮素添加做出响应。西伯利亚羽茅主要通过提高比叶面积、单位质量叶片的叶绿素含量和含氮量，以及株丛生物量，使其在群落占据优势。大针茅和冰草在提高比叶面积、叶片叶绿素含量和含氮量的调节能力相对较低，种群密度沿氮素添加梯度显著降低。黄囊苔草只能通过提高叶片叶绿素含量和含氮量对氮素添加做出响应，其叶绿素a与叶绿素b的比值沿氮素添加梯度逐渐降低，种群密度和地上生物量也显著降低。糙隐子草的叶绿素a与叶绿素b比值沿氮素添加梯度显著降低，但由于糙隐子草具有较高的SLA，且对叶绿素、叶片含氮量的调节能力较强，氮素添加处理没有对其种群密度和地上生物量产生显著的影响。上述结果支持Tilman的光资源竞争假说和Knops等的物种替代假说。 成熟和退化羊草群落土壤微生物量、土壤有机碳、全氮、全磷、速效氮、pH以及凋落物碳、氮、磷含量的测定结果表明：（1）成熟羊草群落表层土壤微生物量碳、氮、磷含量均随氮素添加量的增加而降低;退化羊草群落表层土壤微生物量碳、氮、磷含量沿氮素梯度表现出先增加而后降低的趋势;相关分析的结果显示各群落土壤微生物量碳、氮、磷均与土壤pH呈显著的正相关。（2）微生物量碳、氮、磷含量均随土层深度的增加而下将;而对照的微生物量碳、氮、磷含量则与土壤有机质含量呈显著正相关。（3）年度间降水量差异对土壤微生物量碳、氮、磷具有较大影响。综合上述研究结果，我们认为成熟羊草群落土壤微生物生长不受氮素限制，但退化群落不同;氮素添加导致的土壤酸化作用可能是两类群落表层土壤微生物量下降的主要因素，且这种影响主要集中在0-10cm的表层土壤;表层土壤微生物量碳、氮、磷对氮素添加的响应可能还受到其它因子（如生长季降水量）的影响;深层土壤微生物量较低主要是由于土壤有机质含量较低的缘故。

开垦和放牧对内蒙古草原土壤碳库和温室气体通量的影响

本文采用野外观测和室内测定相结合的方法，研究了内蒙古草原两种主要的土地利用方式（开垦和放牧）对土壤碳库和温室气体通量的影响，结果如下： 1．内蒙古草甸草原开垦后30年后，与天然草原相比，在休闲年份0～20 cm土壤有机碳和土壤微生物量碳含量均没有显著下降，但开垦导致土壤易分解碳下降了24%。土壤易氧化碳受季节性水热因子的驱动，表现出明显的季节变化动态。因此，土壤易分解碳的较土壤碳库的其他组分对开垦更敏感，是表征土壤管理措施引起有机质变化的一个重要指标。 草原开垦后，土壤-植物系统氧化大气甲烷的能力明显提高，农田和天然草原CH4平均吸收通量分别是48.9 和 29.0 μg C m-2 h-1，开垦后增加了1.7倍。开垦没有改变CH4吸收通量 “夏季高秋季低” 的季节变化规律（由降水决定）;开垦使N2O的平均释放通量增加了47%，农田和天然草原N2O平均吸收通量分别是56.6 和 38.6 ugN m-2 h-1;开垦同时也增大了通量的变异幅度;但没有改变N2O季节变化规律，只是出现高峰的时间较天然草原推后约10天左右。 2．开垦后的农田土壤在模拟添加厩肥后，刺激了土壤微生物的呼吸代谢，使CO2的释放量增加了5-7倍。试验期间总体排放的CO2中，约60%来源于羊粪，40% 来源于土壤。两种土壤即羊草顶级草原土壤（高碳高氮）和冷蒿－小禾草退化草原土壤（低碳低氮），在CO2的释放总量和释放比例上都没有显著性差异。添加厩肥均造成两种土壤碳库的净碳损失，并且退化草原土壤（7.0%）的土壤净碳损失要大于羊草草原（2.6%）。说明与开垦后的高C土壤相比，在已经退化草原的低C土壤上施厩肥将趋向于土壤更大的净碳损失。 3．自由放牧22年后，羊草草原0～10 cm土壤有机碳、微生物量碳和易分解碳分别下降了14.1%、27.9%和22.0%;大针茅草原0～5 cm土壤有机碳和微生物量碳分别下降了27.6%和38.2%。两类草原土壤碳组分的季节变化受水热因子的驱动，大针茅草原季节波动出现高峰的时间较羊草草原迟。土壤微生物量碳在表征羊草草原和大针茅草原土壤碳素的动态变化时，要敏感于土壤总有机碳。放牧对冷蒿-小禾草草原土壤各碳素组分影响不明显。在表征放牧对冷蒿-小禾草草原土壤的影响指示上，MB-C/ Org-C和Lab-C/ Org-C要比MB-C和Lab-C更加敏感。这说明在研究放牧对草原土壤碳库影响时，不同的草原类型应使用不同的指标来表征其变化。 内蒙古羊草草原是大气CH4的汇，自由放牧增加土壤对CH4的吸收。CH4平均吸收通量增加了27%，但CH4吸收的季节变化形式没有改变;放牧使。自由放牧还增大了N2O的排放通量，将原来N2O源、汇的双重功能改变为单一的源功能;放牧使N2O平均释放通量增加了1倍;放牧显著增加了羊草草原向大气排放CO2的量（p<0.05），并且年度排放量范围也有所增大。 4．草原羊尿斑土壤的pH和NH4+浓度在施后显著升高，但土壤微生物C和N没有明显变化，尿斑N素会发生大量的流失。粪斑和厩肥斑中各有46%和27%的N素分解后转移到植物中。羊草种群斑块上粪尿斑引起CO2和N2O通量的变化，要大于星毛委陵菜种群斑块。与植被类型的影响相比，羊粪尿斑尤其是尿斑对温室气体通量的影响更大。尿斑既降低了土壤对CH4的吸收，又增加了CO2和N2O的释放，使粪尿斑上相当于CO2的净排放量比对照土壤增加了15%。 在内蒙古草原中等放牧条件下，家畜粪尿斑在放牧草地上的覆盖面积约只有2%，与未被家畜排泄物覆盖的草原土壤 相比，粪尿斑对内蒙古草原温室气体总体收支产生的影响可以忽略不计。因此内蒙古草原地区温室气体减排措施的重点，应放在家畜的食性食量对温室气体的影响以及厩肥的科学利用上。但随放牧强度的加大，家畜排泄物覆盖草地的面积将大大增加，加之放牧生态系统中家畜瘤胃代谢产生的的大量温室气体，其对草原温室气体的核算将会产生的影响也是不容忽视的。

内蒙古毛乌素沙地不同生境油蒿(Artemisia ordosica Krasch.)灌丛地碳动态研究

油蒿(Artemisia ordosica Krasch.)是内蒙古鄂尔多斯高原特有的半灌木，构成该地区沙地优势植被类型。主要分布在固定、半固定沙丘，同时在流动沙丘也有少量分布。它在当地经济价值、防风固沙环保方面均处于无以取代的地位。在毛乌素沙地沙漠化日益扩大的严峻态势下,研究其群落地上、地下过程对生境变化的响应不仅对维持干旱、半干旱区生态系统稳定的管理措施上有所帮助，而且也有助于了解全球变化背景下物种对环境条件的长期变化适应策略。 为此，本项研究以毛乌素沙地为研究区域，利用异速生长关系确立不同生境油蒿生物量最佳回归方程，并调查、比较了毛乌素沙地固定沙丘、半固定沙丘和流动沙丘三个生境油蒿灌丛地的生物量、土壤和植被的碳储量、生产力和细根周转、土壤微生物生物量碳、氮和土壤呼吸。具体结果如下： 1. 建立并比较了油蒿枝、株两个水平上各部分（不含细根）生物量异速生长关系式，其中枝形态指标（枝直径BD、枝长BL、叶枝长LBL）与油蒿叶、枝、果各部分生物量的异速关系最好;株水平上冠层面积CA与其叶、枝干、果、粗根各部分生物量的回归效果较好。不同生境生物量与其生长变量的异速生长关系存在差异。2004年调查的油蒿灌丛生物量从固定沙丘、半固定沙丘到流动沙丘分别是354.8，178.3和30.4 g m-2;各部分（叶、枝干、果、粗根、不同径级细根的)生物量都呈递减趋势。地下根与总生物量比值排序为固定>半固定>流动沙丘。不同生境细根生物量垂直分布存在差异，在固定沙丘根可至100 cm，半固定沙丘达90 cm，而在流动沙丘仅为60 cm，这些结果有助于使了解不同生境中的相同物种如何通过自身形态及其生物量调整来适应生境的差异。 2. 不同生境油蒿灌丛地植被碳储量和土壤碳储量在P < 0.05水平上差异显著，其中固定沙丘植被碳储量和土壤碳储量分别为224.04和7521 g C m-2，半固定沙丘是119.27和3029 g C m-2，流动沙丘是16.83和2300 g C m-2。可见沙区土壤有机碳远大于植被碳量。 3. 利用最大值减最小值方法、标准取样法和内生长土芯法研究了不同生境油蒿灌丛地的地上、粗根生产力和地下细根生产力。发现各生境生产力、细根周转都随着植被盖度增加而增加，地下根生产力与总生产力之比随着植被盖度增加而减少;不同生境油蒿灌丛地生产力在P < 0.05水平上存在显著差异，2005年总生产力范围在18.23-293.82 g m-2 yr-1之间;细根总周转率在0.16-0.54 yr-1之间。 4. 利用异速生产关系确立不同生境不同水平上油蒿叶面积的最佳回归关系式并对不同生境的比叶面积（SLA）进行了比较，其中枝水平上各生境叶面积与枝直径、枝叶长、枝长相关关系在P < 0.001水平上显著;株水平上各生境叶面积与株高、冠层面积相关关系在P < 0.001水平显著;从固定沙丘、半固定沙丘到流动沙丘SLA由大变小，这可能与生境养分差异有关。 5. 不同生境油蒿灌丛地土壤微生物碳、氮和土壤呼吸范围分别在117.99-153.99 mg kg-1、1.49-3.31mg kg-1和0.54-1.96 μmol m-2 s-1之间，它们从固定沙丘、半固定沙丘到流动沙丘依次下降。