Chemoenzymatic Synthesis of Chiral Organosulfur Compounds

This thesis is primarily concerned with the enzyme- catalysed synthesis of sulfoxides using reductase and dioxygenase enzymes. Chapter 1 provides an introduction to the topic of redox chemistry with particular emphasis on the application of reductase and dioxygenase enzymes in organosulfur chemistry. Earlier literature methods for the production of enantiopure sulfoxides are reviewed. A brief discussion of the methods used for the determination of enantiomeric excess and absolute configuration is provided. Chapter 2 contains results obtained using a range of whole-cell bacteria each using a dimethyl sulfoxide reductase enzyme. The synthesis of a series of racemic sulfoxides and the development of appropriate CSPHPLC analytical methods is discussed. Kinetic resolutions of a series of sulfoxides have been achieved. Chapter 3 contains a presentation of results using dioxygenase enzymes as biocatalysts for the asymmetric sulfoxidation of dialkyl sulfoxides including thioacetal sulfoxides. A new range of monosulfoxides, cis-dihydrodiols and cis- dihydrodiol sulfoxides have been isolated in enantiopure form. Chapter 4 is focussed on the application of chiral sulfoxides in synthesis. A new chemoenzymatic route to diol sulfoxide enantiomers and the derived enantiopure phenols and catechols is discussed. The application of chemically synthesised sulfoxide enantiomers in the production of hydroxy sulfoxides is reported. Chapter 5 provides a full experimental section where the synthesis of sulfides and racemic sulfoxides is included. The methods used in the isolation and characterisation of bioproducts from the biotransformation are discussed and full experimental details given.

Syntheses, spectroscopy, structures, and conformations of .lambda.3-cyclotriphosphazanes: role of negative hyperconjugation

The reactions of As-chlorocyclotriphosphazane [EtNPCl], with phenols or trifluoroethanol yield the respective aryloxy- or trifluoroethoxy-containingX 3-cyclotriphosphazanes [EtNP(OR)]3 (R = C6H4Br-4 (2),C 6H5 (3C,6 H3-Mez-3,5 (4), C6H3Mez-2,6 (5), CH2CF3 (6)) as their cis-transisomericmixtures. The products have beencharacterized by IRand NMRspectroscopy. Thecrystalstructuresofboth thecis (2a) and trans(2b) isomer_softhep-bromophenoxy derivative have been determined by X-ray diffraction. Crystal data for 2a: triclinic, P1, a = 9.872(4) A, b = 13.438(6) A, c = 13.548(8) A, CY = 117.02(5)', 0 = 96.00(6)', y = 105.38(4)O, Z = 2, final R = 0.080. Crystal data for 2b: monoclinic, P21/n, a = 12.721(6) A, b = 13.468(7) A, c = 17.882(5) A, /3 = 101.62(3)O, Z = 4, final R = 0.066. The cis isomer exhibits a chair-triaxial conformation and the trans isomer a boat-triaxial conformation. Conformational preferences of X3-cyclotriphosphazanes have been probed by both MNDO and ab initio calculations on model systems [HNPXIp (X = H, F). In addition to vicinal lone pair repulsions, negative hyperconjugative interactions involving the nitrogen lone pairs and adjacent P-X Q* orbitals are found to be important (especially when X is an electronegative substituent) in determining the conformational preferences of X3-cyclotriphosphazanes. The calculations also show that the axial - equatorial conversion at phosphorus has a large activation barrier in these systems

Selective deprotection of propargyl ethers using tetrathiomolybdate

Benzyltriethylammonium tetrathiomolybdate, [PhCH2NEt3](2)MoS4, 1 deprotects propargyl ethers of alcohols and phenols in a selective manner in high yields. Easily reducible groups like nitro, aldehyde, keto and allyl are not affected.

A Versatile C-H Functionalization of Tetrahydroisoquinolines Catalyzed by Iodine at Aerobic Conditions

A versatile aerobic catalytic system (I-2 and O-2/TBHP) for C-H functionalization is reported. This CDC (cross-dehydrogentive coupling) reaction is compatible with a large number of nucleophiles and is performed under ambient reaction conditions. The scope of the metal-free CDC is illustrated by synthesizing a variety of functionalized tetrahydroisoquinolines and N,N-dimethylaniline. The highlight of the method is a Friedel-Crafts reaction of phenols and indole with tertiary amines.

Extent and toxicity of contaminated marine sediments in Southeastern Florida

Thirty sites were sampled in southern Biscayne Bay and Manatee Bay in December 1999 to determine the extent of toxicity in sediments. Analyses and assays included: pesticides and phenols in seawater; chemical contaminants in sediment; amphipod mortality, HRGS P450, sea urchin sperm fertilization and embryology, MicrotoxTM, MutatoxTM, grass shrimp AChE and juvenile clam mortality assays; sea urchin sperm, amphipod and oyster DNA damage; and benthic community assessment. Sediment sites near the mouth of canals showed evidence of contamination. Contaminant plumes and associated toxicity do not appear to extend seaward of the mouth of the canals in an appreciable manner. Concentrations of contaminants in the sediments in open areas of Biscayne and Manatee Bays are generally low. (PDF contains 140 pages)

Cloning and analysis of laccases from acinetobacter baumannii isolates

Laccases (benzenediol : oxygen oxi doreductases; EC 1.10.3.2) are wide spread i n nature. They are usually found in higher plants and fungi (Thurston 19 94; Mayer and Staples 2002), but recently some bacterial laccases have also been found . The first laccase studied was from Rhus vernicifera in 1883, a Japanese lacquer tree, fr om which the name laccase was derived (Yoshida , 1883). These enzymes belong to the group of bl ue multi - copper oxidases (MCOs) . They usually contain four copper atoms located in three distinct sites. Each site reacts differently to light. The Type 1 (T1) site copper atom absorbs intensely at 600 nm and emits the blue light , the Type 2 (T2) site copper atom is not visible in the absorption spectr um and last, the Type 3 (T3) site has two c opper atoms and absorbs at 330 nm ( Santhanam et al . , 2011; Quintanar et al . , 2007 ) . The protei n structure acts as a complex ligand for the catalytic coppers, providing them the right structure where changes between the reduction states are thermodynamically possible (Dub é , 2008 ) . These enzymes oxidize a surprisingly wide variety of organic and inorganic compounds like, diphenols, polyphenols, substituted phenols, diamines and a romatic amines, with concomitant reduction of molecular oxygen to water (Thurston , 1

Medição experimental e previsão de velocidade do som de componentes de biocombustíveis

A velocidade do som é uma propriedade que vem sendo cada vez mais utilizada em diferentes áreas tecnológicas. Além disso, a velocidade do som é uma propriedade termodinâmica que está associada a outras propriedades do meio como a compressibilidade isentrópica e isotérmica, entre outras. Neste contexto, muitos estudos foram realizados a fim de obter modelos precisos que possam representar fielmente a velocidade do som, sendo observados desvios absolutos médios entre 0,13 e 24,8%. Neste trabalho, um banco de dados de velocidade do som e massa específica à pressão atmosférica de n-alcanos, alcanos ramificados, n-alcenos, aromáticos, alcoóis, éteres e ésteres, foram compilados da literatura aberta. Utilizando estes dados e baseando-se no modelo de Wada por contribuição de grupo recentemente proposto, foi desenvolvido um novo modelo por contribuição atômica para predizer a velocidade do som de todas as famílias dos compostos investigados neste trabalho. É mostrado que o modelo proposto é capaz de prever a velocidade do som para os compostos destas famílias com desvios próximos da incerteza experimental calculada a partir de diferentes dados da literatura. Este trabalho também discute o efeito da ramificação das cadeias na constante Wada, ressaltando a importância de novas medições para este tipo de compostos. Além disso, observou-se que a literatura necessita de mais dados experimentais de velocidade do som, à pressão atmosférica e diferentes temperaturas para substâncias puras presentes em biodiesel e bio-óleo de pirólise rápida. Neste contexto, o presente trabalho fornece novos dados experimentais de velocidade do som e massa específica de cinco ésteres metílicos de ácidos graxos, também conhecidos como FAMEs, (caprilato de metila, caprato de metila, palmitato de metila, estearato de metila e linoleato de metila), e sete componentes puros presentes em bio-óleo de pirólise à pressão atmosférica, de vários fenóis (fenol, o-, m- e p-cresol), dois éteres fenólicos (2-metoxifenol e eugenol) e um éster fenólico (salicilato de metila), a temperaturas de (288,15-343,15) K. O modelo preditivo de Wada atômico foi utilizado para calcular a velocidade do som dos FAMEs estudados neste trabalho, e os desvios foram comparados com o modelo de Wada por contribuição de grupo. O modelo atômico de Wada foi utilizado para prever a velocidade do som dos componentes puros presentes no bio-óleo de pirólise rápida experimentalmente estudados nesta dissertação. Além disso, os dados de massa específica e velocidade de som foram correlacionados com o modelo de Prigogine-Flory-Patterson (PFP). As propriedades foram bem representadas pelo modelo PFP, no entanto, para a velocidade do som o modelo apresenta desvios sistemáticos na dependência com a temperatura. O desempenho do modelo preditivo de Wada atômico foi considerado satisfatório, devido os desvios observados serem compatíveis ou até menores do que os desvios típicos obtidos na literatura com outros modelos correlativos para o cálculo da velocidade do som de outras substâncias

Investigation of taste tainting in salmon flesh in the Ribble catchment

This report presents the findings of the first phase of an investigation into the cause(s) of taints in salmonid fish in the River Ribble, commissioned by the North West Region of the Environment Agency. There have been reports of tainting in fish taken from both the estuary and the freshwater river for many years, but the contaminants involved and their source and transport pathway are unknown. Tainting by phenols has been of specific concern in the past. The work programme comprised: examination of tainting reports; collection of salmonids; their submission for taste testing; literature review; analysis of fish flesh using gas chromatography-mass spectrometry (GCMS) and analysis of river bed sediments. From enquiries, three common descriptors of the 'taint' were identified: disinfectanty; diesely; and muddy. The incidence of taints appears transient/irregular and may therefore relate to the incidence of discharges and specific threshold concentrations of pollutants. The literature review showed that a wide range of organic compounds including many industrial chemicals, and others which are naturally occurring, can taint fish flesh. Taste testing confirmed the presence of tainted salmon and trout in the Ribbie Catchment. It identified a low incidence of 'untainted' fish but demonstrated the 'taint' to be not specific to one tainting substance. Differences were found both between the species and fish from different parts of the catchment. Overall, most fish exhibited an unpleasant flavour, though this may have been influenced to some extent by the fact that most were sexually mature. The worst tainting was found in trout from the river Calder: a soapy/chemical aftertaste. An unpleasant earthy/musty flavour distinguished the salmon from the trout. Phenol was shown to have been a minor issue during the present study, whilst no hydrocarbon taints were identified. Examination of tissue from the eight salmon exhibiting the worst taints revealed the presence of aromatic hydrocarbons, but no phenolic compounds. Other notable substances present in the fish were siioxanes and benzophenone. Data from sediment analysis is presented which shows the main compounds present to be aromatic and polyaromatic hydrocarbons, that concentrations at two locations R. Darwen and R. Calder were significantly higher than at other sites, and that some phenolic compounds were detected at low levels. A paucity of fish flesh taste descriptors linked to specific compounds prevented an obvious correlation to be made between the tastes observed and the organic compounds detected. Descriptors frequently used by the taste testing panel (e.g. earthy, musty, astringency, chemical) cannot be linked to any of the compounds identified in the tissue analyses. No taste information was available from the literature on siioxanes. Aromatic hydrocarbons though present in tissue and sediments were not identified as tainting.

Analytical method development for the uptake study of different organic pollutants by crops cultivated in compost-amended soils

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Análisis bioinformático de los genes de lacasas YfiH en clones virulentos de Acinetobacter baumannii

[ES] Acinetobacter baumannii es una bacteria Gram negativa, patógena y multirresistente. Su alta capacidad de supervivencia en hospitales y su resistencia a químicos puede deberse a la producción de lacasas. Estas enzimas son capaces de oxidar un sinfín de compuestos como los fenoles utilizados en hospitales para la desinfección de superficies. En este estudio se ha realizado un análisis de actividad lacasa en aislamientos altamente virulentos de los clones internaciones I y II, observando que estas cepas presentan actividad lacasa. Paralelamente, se ha realizado un análisis bioinformático con el que se ha determinado la similitud de los genes de estas lacasas con las ya descritas de la familia “YfiH” y con otras enzimas procedentes de otras especies, demostrando su similitud de secuencia con la lacasa RL5, procedente de una muestra de rumen bovino. Estos hechos suponen un avance en el estudio de lacasas bacterianas en Acinetobacter baumannii cuya caracterización podría desembocar en nuevas líneas de lucha contra dicho patógeno.

Equilíbrio líquido-líquido entre ácido acético, água e fenólicos: experimental e modelagem

Com o passar do tempo, a população mundial vem se conscientizando mais sobre problemas ambientais. Isso fez surgir uma demanda por tecnologias novas que possam se encaixar no cenário de sustentabilidade. Instabilidades frequentes no cenário político-econômico global acabam por elevar o preço do barril do petróleo. Assim a indústria química começa a buscar por alternativas que tenham a mesma versatilidade do petróleo. Dentre as opções de combustíveis renováveis, destaca-se o bio-óleo de pirólise. Seu interesse em estudos científicos vem do fato de poder-se utilizar do rejeito de processos como matéria prima, não necessitando competir por espaço com a plantação de alimentos. Sua composição pode ser representada por ácidos e fenóis. Em especial destacamos o ácido acético e fenóis oxigenados como m-cresol, o-cresol, p-cresol e guaiacol por estarem presentes em grandes quantidades. Sua separação das frações menos polares do bio-óleo pode ser realizada por meio de extração com água que é um reagente abundante e de baixo custo. O conhecimento das propriedades desses componentes puros é amplamente disponível na literatura, porém dados de composições das fases corrosivas, como misturas ternárias de água-ácido acético-m-cresol/o-cresol/p-cresol/guaiacol nas temperaturas de (298,15, 310,65 e 323,15) K são escassos. Devido a isso, o uso de modelos termodinâmicos para simulação do comportamento desses sistemas torna-se interessante. Todavia, quando são testadas as capacidades dos modelos clássicos, como o UNIFAC e NRTL, percebe-se que os mesmos não conseguem reproduzir o comportamento da binodal dos componentes corrosivos. Sendo assim, essa dissertação investigou soluções para melhorar a descrição desses sistemas, assim como obteve dados experimentais para tais sistemas de misturas ternárias de água-ácido acético-m-cresol/o-cresol/p-cresol/guaiacol nas temperaturas de (298,15, 310,65 e 323,15) K; desenvolveu-se uma metodologia para estimar parâmetros do modelo NRTL a partir de dados de composição da binodal e verificou-se a possibilidade de utilizar o modelo UNIFAC para prever o comportamento de equilíbrio de fases. Como resultado foram obtidos 314 novos dados experimentais, obtiveram-se parâmetros para o modelo NRTL que conseguem reproduzir com acurácia a forma da binodal com a metodologia proposta e verificou-se a necessidade de aperfeiçoamento no estudo do modelo UNIFAC para otimizar sua utilização na previsão do comportamento dos sistemas estudados

SPME-HPLC法测定水中的酚类化合物

采用固相微萃取(SPME)高效液相色谱法(HPLC)同时测定了水中苯酚、4-硝基酚、3-甲基酚、2,4-二氯酚、2,4,6-三氯酚、五氯酚等六种酚类化合物的含量.采用ZORBOX SB-C18柱,以甲醇-1%乙酸水溶液为流动相进行梯度洗脱,流速为1.0 mL/min.紫外检测波长为254、280 nm.六种酚类化合物的检出限为0.31～1.90μg/L,加标回收率为88%～103%.该方法操作简单,能快速、准确地检测水中的酚类化合物.

How polluted is the Yangtze River? Water quality downstream from the Three Gorges Dam

The concentrations of major anions and cations, nitrogen and phosphorus, dissolved and particulate trace elements, and organic pollutants were determined for the middle and lower reaches of the Yangtze River (Changjiang) from below the Three Gorges Dam (TGD) to the mouth at Shanghai in November 2006. The concentration of dissolved inorganic phosphate (DIP) was constant at a low level of 6-8 mu gP/L, but the concentration of nitrate (NO3-) approximately doubled downstream and was closely correlated with K+. This translated to a daily load of well over 1000 It of dissolved inorganic nitrogen (DIN) at Datong. The average concentrations of dissolved Pb (0.078 +/- 0.023 mu g/L), Cd (0.024 +/- 0.009 mu g/L), Cr(0.57 +/- 0.09 mu g/L), Cu (1.9 +/- 0.7 mu g/L), and Ni (0.50 +/- 0.49 mu g/L) were comparable with those in other major world rivers, while As (3.3 +/- 1.3 mu g/L) and Zn (1.5 +/- 0.6 mu g/L) were higher by factors of 5.5 and 2.5, respectively. The trace element contents of suspended particles of As (31 +/- 28 mu g/g), Pb (83 +/- 34 mu g/g), and Ni (52 +/- 16 mu g/g) were close to maximum concentrations recommended for rivers by the European Community (EC). The average concentrations of Cd (2.6 +/- 1.6 mu g/g), Cr (185 +/- 102 mu g/g), Cu (115 +/- 106 mu g/g), and Zn (500 +/- 300 mu g/g) exceeded the EC standards by a factor of two, and Hg (4.4 +/- 4.7 mu g/g) by a factor of 4 to 5. Locally occurring peak concentrations exceed these values up to fourfold, among them the notorious elements As, Hg, and Tl. All dissolved and particulate trace element concentrations were higher than estimates made twenty years ago [Zhang, J., Geochemistry of trace metals from Chinese river/estuary systems: an overview. Estuar Coast Shelf Sci 1995; 41: 631-658.]. The enormous loads of anthropogenic pollutants disposed to the river were diluted by the large water discharge of the Yangtze even during the lowest flow resulting in the relatively low concentration levels of trace elements and organic pollutants observed. We estimated loads of e.g. As, Pb and Ni to the East China Sea to be about 4600 kg As d(-1), 3000 kg Pb d(-1), and 2000 kg Ni d(-1). About 6000 t d(-1) of dissolved organic carbon (DOC) was delivered into the sea at the time of our cruise. We tested for 236 organic pollutants, and only the most infamous were found to be barely above detection limits. We estimated that the load of chlorinated compounds, aromatic hydrocarbons, phenols, and PAHs were between 500 and 3500 kg d(-1). We also detected eight herbicides entering the estuary with loads of 5-350 kg d(-1). The pollutant load, even when at low concentrations, are considerable and pose an increasing threat to the health of the East China Sea ecosystem. (c) 2008 Elsevier B.V. All rights reserved.

酚及金的柱色谱行为及在线分析方法的研究

研究了以TBP萃树脂为短柱富集填料富集环境样品中和酚类化合物，以及用其在线分析环境样品中的酚类化合物。为了在线分析中洗脱柱色谱行为作者做了探讨，得到了洗脱峰高与样品浓度之间存在的定量关系。并进一步地以PVC－尼龙6复合树脂为柱填料研究了固相萃取金在线分析方法，考察相萃取行为存在的密切联系。