Electrochemical phase formation involving multicomponents: hemispherical overlap models for varied nucleation and growth conditions

The phenomenological theory of hemispherical growth in the context of phase formation with more than one component is presented. The model discusses in a unified manner both instantaneous and progressive nucleation (at the substrate) as well as arbitrary growth rates (e.g. constant and diffusion controlled growth rates). A generalized version of Avrami ansatz (a mean field description) is used to tackle the ''overlap'' aspects arising from the growing multicentres of the many components involved, observing that the nucleation is confined to the substrate plane only. The time evolution of the total extent of macrogrowth as well as those of the individual components are discussed explicitly for the case of two phases. The asymptotic expressions for macrogrowth are derived. Such analysis depicts a saturation limit (i.e. the maximum extent of growth possible) for the slower growing component and its dependence on the kinetic parameters which, in the electrochemical context, can be controlled through potential. The significance of this model in the context of multicomponent alloy deposition and possible future directions for further development are pointed out.

Primary Sequence That Determines the Functional Overlap between Mitochondrial Heat Shock Protein 70 Ssc1 and Ssc3 of Saccharomyces cerevisiae

The evolutionary diversity of the HSP70 gene family at the genetic level has generated complex structural variations leading to altered functional specificity and mode of regulation in different cellular compartments. By utilizing Saccharomyces cerevisiae as a model system for better understanding the global functional cooperativity between Hsp70 paralogs, we have dissected the differences in functional properties at the biochemical level between mitochondrial heat shock protein 70 (mtHsp70) Ssc1 and an uncharacterized Ssc3 paralog. Based on the evolutionary origin of Ssc3 and a high degree of sequence homology with Ssc1, it has been proposed that both have a close functional overlap in the mitochondrial matrix. Surprisingly, our results demonstrate that there is no functional cross-talk between Ssc1 and Ssc3 paralogs. The lack of in vivo functional overlap is due to altered conformation and significant lower stability associated with Ssc3. The substrate-binding domain of Ssc3 showed poor affinity toward mitochondrial client proteins and Tim44 due to the open conformation in ADP-bound state. In addition to that, the nucleotide-binding domain of Ssc3 showed an altered regulation by the Mge1 co-chaperone due to a high degree of conformational plasticity, which strongly promotes aggregation. Besides, Ssc3 possesses a dysfunctional inter-domain interface thus rendering it unable to perform functions similar to generic Hsp70s. Moreover, we have identified the critical amino acid sequence of Ssc1 and Ssc3 that can ``make or break'' mtHsp70 chaperone function. Together, our analysis provides the first evidence to show that the nucleotide-binding domain of mtHsp70s plays a critical role in determining the functional specificity among paralogs and orthologs across kingdoms.

Effect of gate-drain/source overlap on the noise in 90 nm N-channel metal oxide semiconductor field effect transistors

In this paper, we have studied the effect of gate-drain/source overlap (LOV) on the drain channel noise and induced gate current noise (SIg) in 90 nm N-channel metal oxide semiconductor field effect transistors using process and device simulations. As the change in overlap affects the gate tunneling leakage current, its effect on shot noise component of SIg has been taken into consideration. It has been shown that “control over LOV” allows us to get better noise performance from the device, i.e., it allows us to reduce noise figure, for a given leakage current constraint. LOV in the range of 0–10 nm is recommended for the 90 nm gate length transistors, in order to get the best performance in radio frequency applications.

Performance and variability trade-off with gate-to-source/drain overlap length

The impact of gate-to-source/drain overlap length on performance and variability of 65 nm CMOS is presented. The device and circuit variability is investigated as a function of three significant process parameters, namely gate length, gate oxide thickness, and halo dose. The comparison is made with three different values of gate-to-source/drain overlap length namely 5 nm, 0 nm, and -5 nm and at two different leakage currents of 10 nA and 100 nA. The Worst-Case-Analysis approach is used to study the inverter delay fluctuations at the process corners. The drive current of the device for device robustness and stage delay of an inverter for circuit robustness are taken as performance metrics. The design trade-off between performance and variability is demonstrated both at the device level and circuit level. It is shown that larger overlap length leads to better performance, while smaller overlap length results in better variability. Performance trades with variability as overlap length is varied. An optimal value of overlap length of 0 nm is recommended at 65 nm gate length, for a reasonable combination of performance and variability.

Coalescent Method in Conjunction with Niche Modeling Reveals Cryptic Diversity among Centipedes in the Western Ghats of South India

Background: There has been growing interest in integrative taxonomy that uses data from multiple disciplines for species delimitation. Typically, in such studies, monophyly is taken as a proxy for taxonomic distinctiveness and these units are treated as potential species. However, monophyly could arise due to stochastic processes. Thus here, we have employed a recently developed tool based on coalescent approach to ascertain the taxonomic distinctiveness of various monophyletic units. Subsequently, the species status of these taxonomic units was further tested using corroborative evidence from morphology and ecology. This inter-disciplinary approach was implemented on endemic centipedes of the genus Digitipes (Attems 1930) from the Western Ghats (WG) biodiversity hotspot of India. The species of the genus Digitipes are morphologically conserved, despite their ancient late Cretaceous origin. Principal Findings: Our coalescent analysis based on mitochondrial dataset indicated the presence of nine putative species. The integrative approach, which includes nuclear, morphology, and climate datasets supported distinctiveness of eight putative species, of which three represent described species and five were new species. Among the five new species, three were morphologically cryptic species, emphasizing the effectiveness of this approach in discovering cryptic diversity in less explored areas of the tropics like the WG. In addition, species pairs showed variable divergence along the molecular, morphological and climate axes. Conclusions: A multidisciplinary approach illustrated here is successful in discovering cryptic diversity with an indication that the current estimates of invertebrate species richness for the WG might have been underestimated. Additionally, the importance of measuring multiple secondary properties of species while defining species boundaries was highlighted given variable divergence of each species pair across the disciplines.

Multispecies coexistence of trees in tropical forests: spatial signals of topographic niche differentiation increase with environmental heterogeneity

Neutral and niche theories give contrasting explanations for the maintenance of tropical tree species diversity. Both have some empirical support, but methods to disentangle their effects have not yet been developed. We applied a statistical measure of spatial structure to data from 14 large tropical forest plots to test a prediction of niche theory that is incompatible with neutral theory: that species in heterogeneous environments should separate out in space according to their niche preferences. We chose plots across a range of topographic heterogeneity, and tested whether pairwise spatial associations among species were more variable in more heterogeneous sites. We found strong support for this prediction, based on a strong positive relationship between variance in the spatial structure of species pairs and topographic heterogeneity across sites. We interpret this pattern as evidence of pervasive niche differentiation, which increases in importance with increasing environmental heterogeneity.

Average Overlap for Clustering Incomplete Data using Symmetric Non-Negative Matrix Factorization

Clustering techniques which can handle incomplete data have become increasingly important due to varied applications in marketing research, medical diagnosis and survey data analysis. Existing techniques cope up with missing values either by using data modification/imputation or by partial distance computation, often unreliable depending on the number of features available. In this paper, we propose a novel approach for clustering data with missing values, which performs the task by Symmetric Non-Negative Matrix Factorization (SNMF) of a complete pair-wise similarity matrix, computed from the given incomplete data. To accomplish this, we define a novel similarity measure based on Average Overlap similarity metric which can effectively handle missing values without modification of data. Further, the similarity measure is more reliable than partial distances and inherently possesses the properties required to perform SNMF. The experimental evaluation on real world datasets demonstrates that the proposed approach is efficient, scalable and shows significantly better performance compared to the existing techniques.

What mechanism of niche segregation allows the coexistence of sympatric sibling rhinolophid bats?

Introduction: Our purpose was to assess how pairs of sibling horseshoe bats coexists when their morphology and echolocation are almost identical. We collected data on echolocation, wing morphology, diet, and habitat use of sympatric Rhinolophus mehelyi and R. euryale. We compared our results with literature data collected in allopatry with similar protocols and at the same time of the year (breeding season). Results:Echolocation frequencies recorded in sympatry for R. mehelyi (mean = 106.8 kHz) and R. euryale (105.1 kHz) were similar to those reported in allopatry (R. mehelyi 105–111 kHz; R. euryale 101–109 kHz). Wing parameters were larger in R. mehelyi than R. euryale for both sympatric and allopatric conditions. Moths constitute the bulk of the diet of both species in sympatry and allopatry, with minor variation in the amounts of other prey. There were no inter-specific differences in the use of foraging habitats in allopatry in terms of structural complexity, however we found inter-specific differences between sympatric populations: R. mehelyi foraged in less complex habitats. The subtle inter-specific differences in echolocation frequency seems to be unlikely to facilitate dietary niche partitioning; overall divergences observed in diet may be explained as a consequence of differential prey availability among foraging habitats. Inter-specific differences in the use of foraging habitats in sympatry seems to be the main dimension for niche partitioning between R. mehelyi and R. euryale, probably due to letter differences in wing morphology. Conclusions: Coexistence between sympatric sibling horseshoe bats is likely allowed by a displacement in spatial niche dimension, presumably due to the wing morphology of each species, and shifts the niche domains that minimise competition. Effective measures for conservation of sibling/similar horseshoe bats should guarantee structural diversity of foraging habitats.

The minimal overlap cost sharing rule

In this paper we introduce a new cost sharing rule-the minimal overlap cost sharing rule-which is associated with the minimal overlap rule for claims problems defined by O'Neill (1982). An axiomatic characterization is given by employing a unique axiom: demand separability. Variations of this axiom enable the serial cost sharing rule (Moulin and Shenker, 1992) and the rules of a family (Albizuri, 2010) that generalize the serial cost sharing rule to be characterized. Finally, a family that includes the minimal overlap cost sharing rule is defined and obtained by means of an axiomatic characterization.

Diet and feeding ecology of two sizes of Barbodes gonionotus (=Puntius gonionotus) and Oreochromis sp. in ricefields in Bangladesh

Fish culture experiments were conducted to compare and evaluate the feeding pattern and strategies, daily ration, gastric evacuation rates, dietary breadth, similarity and overlap of silver barb, Barbodes gonionotus, and tilapia, Oreochromis sp. (natural hybrid of O. mossambicus x O. niloticus) in a rice-fish system. B. gonionotus was found to be a macrophtophagous column feeder while Oreochromis sp. was a detrivorous benthophagic browser. Ontogenic shifts in diet were clearly observed in B. gonionotus while absent in Oreochromis sp. For both species, daily food ration for the small fish was twice as large as that for the large fish. Mean rates of gastric evacuation were 0.18 h super(1) for small and 0.05 h super(1) for large B. gonionotus and 0.09 h super(1) and 0.14h super(1) for small and large Oreochromis sp., respectively. In terms of intraspecific dietary width, the smaller sized individuals of both species had a wider dietary niche than the larger conspecifics. Larger fish increased their specialization and reliance on few food items with increasing size and competitive ability. When both species were reared together, B. gonionotus showed a wider niche width than tilapia. Wider interspecific niche width of B. gonionotus compared to that of tilapia and significant interspecific dietary overlap is likely to result in suppression of the growth of tilapia in mixed culture due to: 1) a high degree of specialization and reliance of tilapia on food of low-nutrient value, and 2) slower gastric evacuation rates as compared to B. gonionotus, which would allow B. gonionotus to outgrow similar sized tilapia.

Anfíbios em uma floresta úmida da vertente pacífico ao sudoeste da Colômbia: avaliação da diversidade e sistemática de espécies, e o uso de recursos alimentares

Na Colômbia ocorrem 787 espécies de anfíbios. Por causa da preocupação com o estado de conservação de muitas dessas espécies, tem se sugerido que na Colômbia deveriam-se priorizar as pesquisas em taxonomia e ecologia em regiões sub-amostradas a fim de intensificar o conhecimento e conservação dos anfíbios colombianos. Baseados em uma análise cienciométrica de 319 trabalhos sobre a ecologia dos anfíbios colombianos publicados entre 1840 e 2014 (No Capítulo 1), identificamos as tendências nos esforços realizados em distintos temas de pesquisa, e a distribuição regional e taxonômica desses estudos. A maioria dos estudos (67%) foi realizada na região Andina colombiana em comparação com outras regiões naturais da Colômbia. Apenas 46% das espécies de anfíbios ocorrendo na Colômbia foi tratada nos estudos analizados, e a maioria (58%) delas é da região Andina. Entre as publicações analizadas identificamos 14 temas de pesquisa em ecologia, dos quais ecologia reprodutiva (26%), conservação de espécies (23%) e dieta (14%) foram os mais pesquisados. Nossos dados mostraram que na Colômbia há um considerável avanço na pesquisa sobre a ecologia dos anfíbios do país, mas ainda são necessários esforços para cobrir muitos vazios de informação para muitas regiões e para muitas espécies de anfíbios que possuem dados incipientes. No sudoeste da Cordilheira Ocidental colombiana há pouca informação ecológica sobre os anfíbios ali ocorrendo. A fim de saber alguns aspectos ecológicos dessas espécies, desenvolvimos três estudos sobre a diversidade e ecologia de anfíbios presentes na Reserva Natural Río Ñambí (a seguir RNRÑ). No Capítulo 2 apresentamos uma análise sistemática do gênero Andinophryne (Família Bufonidae), composto por três espécies, A. atelopoides, A. colomai (presente na RNRÑ) e A. olallai. As filogenias mostraram que Andinophryne está incorporado dentro de Rhaebo. Portanto, sinonimizamos Andinophryne sob Rhaebo e discutimos as sinapomorfias morfológicas putativas para Rhaebo. Além, fornecemos informações ecológicas e sobre o estado de conservação das três espécies incluídas na nova combinação taxonômica. No Capítulo 3 apresentamos uma lista de 19 espécies de anfíbios pertencentes a oito famílias, com uma dominância numérica da família Craugastoridae e do gênero Pristimantis. As espécies com a maior abundância relativa (> 25%) foram Pristimantis labiosus e P. verecundus. Sete diferentes modos de reprodução foram reconhecidos, com a maioria das espécies (68%) possuindo desenvolvimento direto de ovos. Cinco (26%) das espécies registradas estão classificadas dentro das categorias de maior ameaça de extinção. Reportamos para sete espécies a extensão da faixa de distribuição geográfica latitudinal na Colômbia. No Capítulo 4 comparamos a dieta de jovens e adultos de P. labiosus para identificar se houve uma mudança ontogenética no tamanho de presa consumido com o aumento na largura da boca. A dieta foi composta por 19 categorias de presas (> artrópodes), com as duas classes de idade consumindo um similar espectro de categorias. Os jovens têm um nicho trófico maior (0,45) do que os adultos (0,25), com uma sobreposição de nicho relativamente baixa (0,39) entre eles. Apesar da diferencia na largura da boca entre jovens e adultos, não houve uma correspondente mudança ontogenética no tamanho de presa consumida. Consideramos P. labiosus como um predador generalista que parece consumer uma ampla gama de tipos e tamanhos de presas

Habitat and diet overlap of 4 piscivorous fishes: variation on the inner continental shelf off New Jersey

Piscivorous fishes, many of which are economically valuable, play an important role in marine ecosystems and have the potential to affect fish and invertebrate populations at lower trophic levels. Therefore, a quantitative understanding of the foraging ecology of piscivores is needed for ecosystem-based fishery management plans to be successful. Abundance and stomach contents of seasonally co-occurring piscivores were examined to determine overlap in resource use for Summer Flounder (Paralichthys dentatus; 206–670 mm total length [TL]), Weakfish (Cynoscion regalis; 80–565 mm TL), Bluefish (Pomatomus saltatrix; 55–732 mm fork length [FL]), and Striped Bass (Morone saxatilis; 422–920 mm FL). We collected samples from monthly, fishery-independent trawl surveys conducted on the inner continental shelf (5–27 m) off New Jersey from June to October 2005. Fish abundances and overlaps in diet and habitat varied over this study period. A wide range of fish and invertebrate prey was consumed by each species. Diet composition (determined from 1997 stomachs with identifiable contents) varied with ontogeny (size) and indicated limited overlap between most of the species size classes examined. Although many prey categories were shared by the piscivores examined, different temporal and spatial patterns in habitat use seemed to alleviate potential competition for prey. Nevertheless, the degree of overlap in both fish distributions and diets increased severalfold in the fall as species left estuaries and migrated across and along the study area. Therefore, the transitional period of fall migration, when fish densities are higher than at other times of the year, may be critical for unraveling resource overlap for these seasonally migrant predators.

The Hudson-Raritan Estuary as a crossroads for distribution of blue (Callinectes sapidus), lady (Ovalipes ocellatus), and Atlantic rock (Cancer irroratus) crabs

Blue (Callinectes sapidus)(Portunidae),lady (Ovalipes ocellatus)(Portunidae), and Atlantic rock (Cancer irroratus) (Cancridae) crabs inhabit estuaries on the northeast United States coast for parts or all of their life cycles. Their distributions overlap or cross during certain seasons. During a 1991–1994 monthly otter trawl survey in the Hudson-Raritan Estuary between New York and New Jersey, blue and lady crabs were collected in warmer months and Atlantic rock crabs in colder months. Sex ratios, male:female, of mature crabs were 1:2.0 for blue crabs, 1:3.1 for lady crabs, and 21.4:1 for Atlantic rock crabs. Crabs, 1286 in total, were subsampled for dietary analysis, and the dominant prey taxa for all crabs, by volume of foregut contents, were mollusks and crustaceans. The proportion of amphipods and shrimp in diets decreased as crab size increased. Trophic niche breadth was widest for blue crabs, narrower for lady crabs, and narrowest for Atlantic rock crabs. Trophic overlap was lowest between lady crabs and Atlantic rock crabs, mainly because of frequent consumption of the dwarf surfclam (Mulinia lateralis) by the former and the blue mussel (Mytilus edulis) by the latter. The result of cluster analysis showed that size class and location of capture of predators in the estuary were more influential on diet than the species or sex of the predators.

Morphological overlap of fish community in Vamanapuram River, south Kerala

The morphological characteristics and overlap of fish community in Vamanapuram River have been studied in detail. In the 12 study sites, 19 fish species were encountered. Based on the body shape, four different types are apparent. The elongate bodied fishes (RBD<1.5) like Hemiramphus xanthopterus and Xenentodon cancila are grouped under one category. The deep bodied fishes (RBD>3.5) like Puntius filamentosus, P. ticto, P. vittatus, P. melanampyx, P. sarana, Etroplus maculatus and E. suratensis come under a separate category. Fishes with round to square cross section like Garra mullya and Glossogobius giuris form a separate group. All the other species are grouped as generalized bodied fishes. The morphological overlap studied for the Vamanapuram fish community showed that out of 190 combinations, 30 combinations have high overlaps (≥ 67). P. melanampyx has maximum number (6) of high overlaps. Puntius spp., which constituted 49.5% of the total population, have a mean morphological overlap of 52%. The morphological overlap of fish species in relation to the trophic structure is discussed in detail.