Treatment of polycarbonate by dielectric barrier discharge (DBD) at atmospheric pressure

Generally most plastic materials are intrinsically hydrophobic, low surface energy materials, and thus do not adhere well to other substances. Surface treatment of polymers by discharge plasmas is of great and increasing industrial application because it can uniformly modify the surface of sample without changing the material bulk properties and is environmentally friendly. The plasma processes that can be conducted under ambient pressure and temperature conditions have attracted special attention because of their easy implementation in industrial processing. Present work deals with surface modification of polycarbonate (PC) by a dielectric barrier discharge (DBD) at atmospheric pressure. The treatment was performed in a parallel plate reactor driven by a 60Hz power supply. The DBD plasmas at atmospheric pressure were generated in air and nitrogen. Material characterization was carried out by contact angle measurements, and X-ray photoelectron spectroscopy (XPS). The surface energy of the polymer surface was calculated from contact angle data by Owens-Wendt method using distilled water and diiodomethane as test liquids. The plasma-induced chemical modifications are associated with incorporation of polar oxygen and nitrogen containing groups on the polymer surface. Due to these surface modifications the DBD-treated polymers become more hydrophilic. Aging behavior of the treated samples revealed that the polymer surfaces were prone to hydrophobic recovery although they did not completely recover their original wetting properties.

Thermodynamics of a bouncer model: A simplified one-dimensional gas

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Polarization effect on the two-photon absorption of a chiral compound

In this report, we investigate the polarization effect (linear, elliptical and circular) on the two-photon absorption (2PA) properties of a chiral compound based in azoaromatic moieties using the femtosecond Z-scan technique with low repetition rate and low pulse energy. We observed a strong 2PA modulation between 800 nm and 960 nm as a function the polarization changes from linear through elliptical to circular. Such results were interpreted employing the sum-over-essential states approach, which allowed us to model the 2PA circular-linear dichroism effect and to identifier the overlapping of the excited electronic states responsible by the 2PA allowed band. (C) 2012 Optical Society of America

Records of sedimentary dynamics in the continental shelf and upper slope between Aveiro-Espinho (N Portugal)

The sedimentary unconsolidated cover of the Aveiro-Espinho continental shelf and upper slope (NW Portugal) records a complex interplay of processes including wave energy and currents, fluvial input, sediment transport alongshore and cross-shelf, geological and oceanographic processes and sediment sources and sinks. In order to study this record, a set of surface sediment samples was studied. Sediment grain size and composition, as well as the mineralogical composition (by XRD) of the fine (<63 mu m) and clay (<2 mu m) fractions and benthic microfaunal (foraminifera) data were analysed. Cluster analysis applied to the sedimentological data (grain size, sediment composition and mineralogy) allowed the establishment of three main zones corresponding to the: inner-, mid- and outer-shelf/upper slope. On the inner-shelf, the sedimentary coverture is composed of siliciclastic fine to very fine sand, essentially comprising modern (immature) terrigenous particles. The sediment grain size, as well as mineralogical and microfaunal composition, denote the high energetic conditions of this sector in which the alongshore transport of sand is predominantly southward and occurs mostly during the spring-summer oceanographic regime, when the main river providing sediments to this area, the River Douro, undergoes periods of drought. This effect may emphasize the erosive character of this coastal sector at present, since the Ria de Aveiro provides the shelf with few sediments. On the mid-shelf, an alongshore siliciclastic band of coarse sand and gravel can be found between the 40 m and 60 m isobaths. This gravelly deposit includes relic sediments deposited during lower sea-level stands. This structure stays on the surface due to the high bottom energy, which promotes the remobilization of the fine-grained sediments, and/or events of sediments bypassing. Benthic foraminifera density and "Benthic Foraminifera High Productivity" (BFHP) proxy values are in general low, which is consistent with the overall small supply of organic matter to the oceanic bottom in the inner- and mid-shelf. However, the Ria de Aveiro outflow, which delivers organic matter to the shelf, leaves its imprint mainly on the mid-shelf, identifiable by the increase in foraminifera density and BFHP values in front of the lagoon mouth. The higher values of BFHP along the 100 m isobath trace the present position of an oceanic thermal front whose situation may have changed in the last 3/5 ka BP. This zone marks a clear difference in the density, diversity and composition of benthic foraminifera assemblages. Here, in addition, sediment composition changes significantly, giving rise to carbonate-rich fine to medium sand in the deeper sector. The low bottom energy and the small sedimentation rate of the outer-shelf contributed to the preservation of a discontinuous carbonate-rich gravel band, between the 100 m and 140 m isobaths, also related to paleo-littorals, following the transgression that has occurred since the Last Glacial Maximum. The winter oceanographic regime favours the transport of fine grained sediments to the outer-shelf and upper slope. The inner- and mid-shelf, however, have low amounts of this kind of sediment and the Cretacic carbonated complexes Pontal da Galega and Pontal da Cartola, rocky outcrops located at the mid- and outer-shelf, act as morphological barriers to the cross-shelf transport of sediments. Thus a reduced sedimentation rate occurs in these deeper sectors, as indicated by the lower abundance of detrital minerals, which is compensated for the high sedimentary content of biogenic carbonates. The relatively high BFHP and Shannon Index values indicate water column stratification, high supply of organic matter and environmental stability, which provide favourable conditions for a diversified benthic fauna to flourish. These conditions also encourage authigenic chemical changes, favourable to glauconite formation, as well as illite and kaolinite degradation. Benthic foraminifera and clay mineral assemblages also reveal the effect of the internal waves pushing upward, and downslope losses of the sediments on the outer-shelf and upper slope.

Metrologia dei campi di radiazioni di bassa energia

The conversion coefficients from air kerma to ICRU operational dose equivalent quantities for ENEA’s realization of the X-radiation qualities L10-L35 of the ISO “Low Air Kerma rate” series (L), N10-N40 of the ISO “Narrow spectrum” series (N) and H10-H60 of the ISO “High Air-kerma rate” (H) series and two beams at 5 kV and 7.5 kV were determined by utilising X-ray spectrum measurements. The pulse-height spectra were measured using a planar high-purity germanium spectrometer (HPGe) and unfolded to fluence spectra using a stripping procedure then validate with using Monte Carlo generated data of the spectrometer response. HPGe portable detector has a diameter of 8.5 mm and a thickness of 5 mm. The entrance window of the crystal is collimated by a 0.5 mm thick Aluminum ring to an open diameter of 6.5 mm. The crystal is mounted at a distance of 5 mm from the Berillium window (thickness 25.4 micron). The Monte Carlo method (MCNP-4C) was used to calculate the efficiency, escape and Compton curves of a planar high-purity germanium detector (HPGe) in the 5-60 keV energy. These curves were used for the determination of photon spectra produced by the X-ray machine SEIFERT ISOVOLT 160 kV in order to allow a precise characterization of photon beams in the low energy range, according to the ISO 4037. The detector was modelled with the MCNP computer code and validated with experimental data. To verify the measuring and the stripping procedure, the first and the second half-value layers and the air kerma rate were calculated from the counts spectra and compared with the values measured using an a free-air ionization chamber. For each radiation quality, the spectrum was characterized by the parameters given in ISO 4037-1. The conversion coefficients from the air kerma to the ICRU operational quantities Hp(10), Hp(0.07), H’(0.07) and H*(10) were calculated using monoenergetic conversion coefficients. The results are discussed with respect to ISO 4037-4, and compared with published results for low-energy X-ray spectra. The main motivation for this work was the lack of a treatment of the low photon energy region (from a few keV up to about 60 keV).

Grazing incidence pumped Zr x-ray laser for spectroscopy on Li-like ions

X-ray laser fluorescence spectroscopy of the 2s-2p transition in Li-like ions is promising to become a widely applicable tool to provide information on the nuclear charge radii of stable and radioactive isotopes. For performing such experiments at the Experimental Storage Ring ESR, and the future NESR within the FAIR Project, a grazing incidence pumped (GRIP) x-ray laser (XRL) was set up at GSI Darmstadt using PHELIX (Petawatt High Energy Laser for heavy Ions eXperiments). The experiments demonstrated that lasing using the GRIP geometry could be achieved with relatively low pump energy, a prerequisite for higher repetition rate. In the first chapter the need of a plasma XRL is motivated and a short history of the plasma XRL is presented. The distinctive characteristic of the GRIP method is the controlled deposition of the pump laser energy into the desired plasma density region. While up to now the analysis performed were mostly concerned with the plasma density at the turning point of the main pump pulse, in this thesis it is demonstrated that also the energy deposition is significantly modified for the GRIP method, being sensitive in different ways to a large number of parameters. In the second chapter, the theoretical description of the plasma evolution, active medium and XRL emission properties are reviewed. In addition an innovative analysis of the laser absorption in plasma which includes an inverse Bremsstrahlung (IB) correction factor is presented. The third chapter gives an overview of the experimental set-up and diagnostics, providing an analytical formula for the average and instantaneous traveling wave speed generated with a tilted, on-axis spherical mirror, the only focusing system used up to now in GRIP XRL. The fourth chapter describes the experimental optimization and results. The emphasis is on the effect of the incidence angle of the main pump pulse on the absorption in plasma and on output and gain in different lasing lines. This is compared to the theoretical results for two different incidence angles. Significant corrections for the temperature evolution during the main pump pulse due to the incidence angle are demonstrated in comparison to a simple analytical model which does not take into account the pumping geometry. A much better agreement is reached by the model developed in this thesis. An interesting result is also the appearance of a central dip in the spatially resolved keV emission which was observed in the XRL experiments for the first time and correlates well with previous near field imaging and plasma density profile measurements. In the conclusion also an outlook to the generation of shorter wavelength XRL’s is given.

Photonen-Aufkonversion in Nanokapseln

Die vorliegende Dissertation zeigt eine erfolgreiche Verknüpfung der Triplett-Triplett-Annihilations-Aufkonversion (TTA-UC) mit möglichen biologischen Anwendungen. Die Grundlage für solche Anwendungen ist ein Transfer der TTA-UC aus seinem üblicherweise verwendeten organischen Medium in eine wässrige Umgebung. Um diesen Transfer zu realisieren, wurden, unter Anwendung der Technik des Miniemulsionsprozesses, in Wasser dispergierte Nanokapseln herstellt. Der Kern dieser Nanokapseln besteht aus einem flüssigen hydrophoben Medium (meist Hexadekan oder Phenylheptadekan), in dem die zur TTA-UC notwendigen Farbstoffe gelöst sind. Dieser flüssige Kern ist vollständig von einer festen Polymerhülle umschlossen und somit isoliert von seiner wässrigen Umgebung. Es wurden insgesamt drei Generationen solcher Nanokapseln hergestellt, die sich hauptsächlich im Herstellungsprozess, aber auch beim Material von Kern und Hülle unterscheiden. Mittels dieser Variationen konnten die Nanokapseln in Bezug auf Effizienz, Anregungswellenlänge und Sauerstoffempfindlichkeit optimiert werden. Bei der ersten Generation wurde die radikalische Miniemulsionspolymerisation zur Kapselbildung verwendet. Die zweite Generation wurde durch die Kombination des Lösungsmittelverdampfungsprozesses mit dem Miniemulsionsprozess entwickelt und liefert somit eine alternative Möglichkeit der Kapselbildung unter milden Reaktionsbedingungen, was eine uneingeschränkte Auswahl der UC-Farbstoffpaare ermöglicht. Durch den Einsatz unterschiedlicher Sensitizer konnte die Anregungswellenlänge der TTA-UC in den roten und in den nahen Infrarot-Bereich des sichtbaren Spektrums verschoben werden. Diese Verschiebung ist im biologischen Anwendungsbereich von enormer Bedeutung, da dort eine Überlappung mit dem natürlichen optischen Fenster von menschlicher Haut und Gewebe stattfindet. Dies reduziert die Streuung der Anregungsquelle im zu untersuchende Medium und ermöglicht hohe Eindringtiefen. Mit den Kapseln der zweiten Generation wurde zum ersten Mal TTA-UC in lebenden HeLa-Zellen (Krebszellen) und MSCs (Mesenchymale Stammzellen) nachgewiesen. Die verzögerte Fluoreszenz aus den Zellen wurde mit biologischen Standardverfahren, sowohl mit der Durchflusszytometrie (FACS) als auch am cLSM nachgewiesen. Besondere Vorteile gegenüber direkter Fluoreszenz konnten bei der Bildgebung von Zellen erreicht werden. Die relativ energiearme Anregungswellenlänge und die dazu anti-Stokes verschobene, detektierte verzögerte UC-Fluoreszenz lieferte eine bessere Bildqualität und eine sehr geringe Phototoxizität der Zellen. Die Kapseln der dritten Generation zeichnen sich durch ihre anorganische, tetraedrisch verknüpfte SiO2-Hülle aus und wurden mittels einer Grenzflächenreaktion (Sol-Gel-Prozess) in Miniemulsion hergestellt. Diese Kapseln weisen im Vergleich zu den Polymernanokapseln eine bessere UC-Effizienz auf und sind zusätzlich stabiler und robuster.

Development of a direct evaporation bismuth Hall thruster

Hall thrusters have been under active development around the world since the 1960’s. Thrusters using traditional propellants such as xenon have been flown on a variety of satellite orbit raising and maintenance missions with an excellent record. To expand the mission envelope, it is necessary to lower the specific impulse of the thrusters but xenon and krypton are poor performers at specific impulses below 1,200 seconds. To enhance low specific impulse performance, this dissertation examines the development of a Hall-effect thruster which uses bismuth as a propellant. Bismuth, the heaviest non-radioactive element, holds many advantages over noble gas propellants from an energetics as well as a practical economic standpoint. Low ionization energy, large electron-impact crosssection and high atomic mass make bismuth ideal for low-specific impulse applications. The primary disadvantage lies in the high temperatures which are required to generate the bismuth vapors. Previous efforts carried out in the Soviet Union relied upon the complete bismuth vaporization and gas phase delivery to the anode. While this proved successful, the power required to vaporize and maintain gas phase throughout the mass flow system quickly removed many of the efficiency gains expected from using bismuth. To solve these problems, a unique method of delivering liquid bismuth to the anode has been developed. Bismuth is contained within a hollow anode reservoir that is capped by a porous metallic disc. By utilizing the inherent waste heat generated in a Hall thruster, liquid bismuth is evaporated and the vapors pass through the porous disc into the discharge chamber. Due to the high temperatures and material compatibility requirements, the anode was fabricated out of pure molybdenum. The porous vaporizer was not available commercially so a method of creating a refractory porous plate with 40-50% open porosity was developed. Molybdenum also does not respond well to most forms of welding so a diffusion bonding process was also developed to join the molybdenum porous disc to the molybdenum anode. Operation of the direct evaporation bismuth Hall thruster revealed interesting phenomenon. By utilizing constant current mode on a discharge power supply, the discharge voltage settles out to a stable operating point which is a function of discharge current, anode face area and average pore size on the vaporizer. Oscillations with a 40 second period were also observed. Preliminary performance data suggests that the direct evaporation bismuth Hall thruster performs similar to xenon and krypton Hall thrusters. Plume interrogation with a Retarding Potential Analyzer confirmed that bismuth ions were being efficiently accelerated while Faraday probe data gave a view of the ion density in the exhausted plume.

Spectral reflectance of ODP Leg 178 holes

The routine use of spectrophotometry on the sediment surfaces of archive halves of each section during the onboard sedimentological core description process is a great stride toward development of real-time noninvasive characterization of deep-sea sediments. Spectral reflectance data have been used so far for mineral composition studies as well as for lithostratigraphic correlation between sites (Balsam and Deaton, 1991; Balsam et al., 1997; Mix et al., 1995; Ortiz et al., 1999). Their results demonstrate that spectrophotometry can estimate CaCO3 content by using the 4.65-, 5.25-, and 5.55-µm wavelength spectrums. A detailed overview of various other noninvasive methods is given in Ortiz and Rack (1999). The purpose of this study is to test whether spectrophotometry in the visible band can be used as a tool to gather further information about grain-size variation, sorting, compaction, and porosity, which are directly linked to the sedimentation process. From remote sensing data analyses, it is known that diffuse spectral reflectance data in the visible band in the wavelength window of 7.0-6.5 µm are sensitive to grain-size variations. It appears that a relationship between grain size and signal absorption exists only in this wavelength window. (e.g., Clark, 1999; Gaffey, 1986; Gaffey et al., 1993). Variations in grain size during a sedimentation process are linked to depositional energy, which affects sorting, compaction, and porosity of sediment deposits. As an example, we study here the spectrophotometric data of the sedimentary sequence of Hole 1098C, which was deposited under widely varying environmental conditions. Alternating turbidite and finely laminated sediments were recovered from Hole 1098C. The turbidites are related to a high depositional energy environment; the finely laminated sediments are related to a low depositional energy environment. Data from Hole 1098C were therefore used to test whether the spectral reflectance data can provide a proxy for these different depositional environments.

Principales efectos de la aplicación de una metodología destinada a inducir la muda en ponedoras comerciales sobre su producción cuantitativa y cualitativa durante el segundo ciclo de puesta

En la presente Tesis Doctoral se ha estudiado el efecto de una metodología para inducir la muda en dos estirpes de gallinas ponedoras comerciales, una ligera y otra semipesada, mediante el suministro de tres alimentos: salvado de trigo, cebada en grano y un pienso comercial de ponedoras aportado en cantidad restringida. Se realizaron dos pruebas en dos lotes diferentes de gallinas. En la primera de ellas se utilizaron 472 animales (236 de cada estirpe) alojados en jaulas con cuatro o seis gallinas por jaula, con una estructura factorial 2 x 3 x 2 (2 estirpes, 3 alimentos, 2 densidades) y una duración total de 32 semanas (4 de muda y 28 de producción posmuda). En la segunda prueba fueron 432 animales los utilizados (216 de cada estirpe), alojados en grupos de cuatro aves por jaula, con una estructura factorial 2 x 3 (2 estirpes, 3 alimentos) y una duración de 27 semanas (4 de muda y 23 de producción postmuda). En los dos experimentos realizados se estudió el efecto del uso de los alimentos citados para inducir de la muda sobre los resultados cuantitativos: pérdida de peso vivo durante la muda e intensidad de puesta, peso medio del huevo y masa de huevo diaria, durante y después de la muda, así como la distribución de la puesta en clases comerciales durante el segundo ciclo de puesta. Así como sobre los resultados cualitativos después de la muda: color de la cáscara de los huevos morenos, espesor de la cáscara, peso específico del huevo, altura del albumen, unidades Haugh y color de la yema. En la primera prueba se estudió, además, el efecto que la inducción de la muda mediante los tres alimentos considerados tuvo sobre la regresión del aparato reproductor de las gallinas durante este período de muda. En el primer experimento se observaron diferencias entre estirpes. Las gallinas ligeras tuvieron una más rápida regresión del aparato reproductor (ovario+oviducto) (P=0,003) que las semipesadas, aunque la regresión total no presentó diferencias significativas. Las gallinas semipesadas tuvieron mejores resultados después de la muda en intensidad de puesta (P<0,0001), en peso medio del huevo (P<0,0001) y en masa de huevo diaria (P=0,0002). También hubo diferencias significativas para las variables cualitativas espesor de la cáscara (mayor en huevos de gallinas semipesadas) mientras que los huevos procedentes de gallinas ligeras presentaron mejores valores de altura del albumen, de unidades Haugh y de color de yema; todas estas variables tuvieron un nivel de significación P<0,0001. El suministro restringido de pienso dio lugar a un mayor porcentaje de pérdida de peso vivo (P<0,0001) aunque la regresión de los órganos del aparato reproductor fue la más baja (P<0,003), no habiéndose encontrado diferencias entre los otros dos alimentos utilizados. Con este alimento también fue más lenta (P<0,0001) la disminución de la puesta durante la muda, aunque fue mayor la producción durante el segundo ciclo (P<0,0001). La única variable cualitativa afectada fue el espesor de cáscara (P<0,0001), con valores más altos en los huevos producidos por las gallinas mudadas con cebada. Los grupos de seis gallinas por jaula produjeron más huevos durante la muda (P<0,0001) aunque después de ésta la densidad de animales no tuvo efecto significativo, como tampoco lo hubo sobre los parámetros de calidad del huevo. En la segunda prueba las gallinas semipesadas experimentaron un menor porcentaje de pérdida de peso corporal (P<0,01) pero tuvieron mayores índices de puesta (P<0,001) y de huevos clasificables (P<0,001) durante la muda. En cambio, durante el segundo ciclo de producción las gallinas ligeras produjeron más huevos (P=0,0041), de menor peso (P<0,02) y con menor consumo de pienso (P<0,001). Los huevos puestos por las gallinas semipesadas tuvieron mayor espesor de cáscara y mayor color de yema, pero peor calidad de albumen (P<0,0001). La mayor pérdida de peso la experimentaron las gallinas mudadas con salvado (P<0,02). La producción durante la muda fue mayor (P<0,001) en las gallinas que consumieron pienso en cantidad restringida y también fueron las que tuvieron menor intensidad de puesta (P<0,006) y masa de huevo diaria (P<0,042) durante el segundo ciclo. El tratamiento de muda no tuvo efecto significativo sobre la calidad del huevo en esta segunda prueba. La principal conclusión que merece destacarse es que es posible inducir la muda a las gallinas ponedoras utilizando alimentos bajos en energía o en proteína, o altos en fibra, con un porcentaje de pérdida de peso vivo no tan alta como las recomendaciones tradicionales, y alcanzar buenos resultados productivos, tanto cuantitativos como cualitativos, durante el segundo ciclo de puesta. ABSTRACT Present Doctoral Thesis has studied the effect of a methodology to induce molting in two strains of commercial laying hens, one light and another semi-heavy one, through the provision of three feed: wheat bran, barley grain and a commercial laying hens feed provided in limited quantity. Two tests were performed in two different lots of layers. In the first 472 animals were used (236 of each strain) housed in cages with four or six hens per cage, with a structure 2 x 3 x 2 factorial (2 strains, 3 meals, 2 densities) and a total duration of 32 weeks (4 of molt and 28 of postmolting). In the second test 432 animals were used (216 each strain), housed in groups of four birds per cage, with a structure factorial 2 x 3 (2 strain, 3 meals) along 27 weeks (4 of molt and 23 of postmolting). In both experiments, we studied the effect of the use of above mentioned foods to induce molting on the quantitative results: body weight lost during the molt and laying index, average egg weight and egg mass daily during and after the molt, as well as on grading in commercial classes during the second laying cycle. As well as on qualitative outcomes after the molt: colour of Brown eggsshell, shell thickness, specific density, albumen height, Haugh units and yolk colour. In the first test was studied, in addition, the effect of induction of molting through the three feed considered on the regression of the reproductive tract of hens during molting period. In the first experiment, differences between strains were observed. Light hens had a faster regression of the reproductive tract (ovary+oviduct) (P=0,003) than semi-heavy hens, although the total regression did not present significant differences. Semi-heavy hens had better outcomes after the molt in laying index (P<0.0001), in average egg weight (P<0.0001) and daily egg mass (P=0, 0002). There were also significant differences for the qualitative variables (higher in semi-heavy hen eggs) as shell thickness while light chicken eggs showed better values of albumen height, Haugh units and yolk color; all these variables had the same level of significance (P<0.0001). Restricted supply of layer feed resulted in a greater percentage of live weight loss (P<0.0001) although the regression of the reproductive organs was the lowest (P<0.003), having not found differences between the other two feed used. With this food decreasing of laying during molting period was also slower (P<0.0001), although production was higher during the second cycle (P < 0.0001). The only qualitative variable affected was shell thickness (P<0.0001), with higher values in the eggs produced by hens molted with barley. Groups of six hens per cage produced more eggs during the moult (P<0.0001) but after this animal density had no significant effect, as neither had it on egg quality parameters. In the second trial hens semi-heavy experienced a lower percentage of body weight loss (P<0.01) but had higher rates of egg production (P<0.001) and of grading eggs (P<0.001) during the moult. On the other hand, during the second production cycle light hens produced more eggs (P=0,0041), of lower weight (P < 0.02) and with less feed intake (P<0.001). Eggs from semi-heavy hens had thicker shell and greater color yolk, but poorer quality of albumen (P<0.0001). The greater weight loss was experimented by the hens molted with wheat bran (P=0.02). Production during molting period was greater (P<0.001) in hens which consumed feed in restricted quantities and were also less the laying index (P=0.006) and daily egg mass (P=0.042) during the second cycle. The molting treatment had no significative effect on the quality of the egg in this second test. The main conclusion that deserves to stand out is that it is possible to induce molting hens using foods low in energy or in protein or high in fiber, with a percentage of live weight loss not as high as the traditional recommendations, and achieve good productive, both quantitative and qualitative results during the second implementation cycle.

A photosystem I reaction center driven by chlorophyll d in oxygenic photosynthesis

A far-red type of oxygenic photosynthesis was discovered in Acaryochloris marina, a recently found marine prokaryote that produces an atypical pigment chlorophyll d (Chl d). The purified photosystem I reaction center complex of A. marina contained 180 Chl d per 1 Chl a with PsaA–F, -L, -K, and two extra polypeptides. Laser excitation induced absorption changes of reaction center Chl d that was named P740 after its peak wavelength. A midpoint oxidation reduction potential of P740 was determined to be +335 mV. P740 uses light of significantly low quantum energy (740 nm = 1.68 eV) but generates a reducing power almost equivalent to that produced by a special pair of Chl a (P700) that absorbs red light at 700 nm (1.77 eV) in photosystem I of plants and cyanobacteria. The oxygenic photosynthesis based on Chl d might either be an acclimation to the far-red light environments or an evolutionary intermediate between the red-absorbing oxygenic and the far-red absorbing anoxygenic photosynthesis that uses bacteriochlorophylls.

Inverse radiation dose-rate effects on somatic and germ-line mutations and DNA damage rates

The mutagenic effect of low linear energy transfer ionizing radiation is reduced for a given dose as the dose rate (DR) is reduced to a low level, a phenomenon known as the direct DR effect. Our reanalysis of published data shows that for both somatic and germ-line mutations there is an opposite, inverse DR effect, with reduction from low to very low DR, the overall dependence of induced mutations being parabolically related to DR, with a minimum in the range of 0.1 to 1.0 cGy/min (rule 1). This general pattern can be attributed to an optimal induction of error-free DNA repair in a DR region of minimal mutability (MMDR region). The diminished activation of repair at very low DRs may reflect a low ratio of induced (“signal”) to spontaneous background DNA damage (“noise”). Because two common DNA lesions, 8-oxoguanine and thymine glycol, were already known to activate repair in irradiated mammalian cells, we estimated how their rates of production are altered upon radiation exposure in the MMDR region. For these and other abundant lesions (abasic sites and single-strand breaks), the DNA damage rate increment in the MMDR region is in the range of 10% to 100% (rule 2). These estimates suggest a genetically programmed optimatization of response to radiation in the MMDR region.

Native protein sequences are close to optimal for their structures

How large is the volume of sequence space that is compatible with a given protein structure? Starting from random sequences, low free energy sequences were generated for 108 protein backbone structures by using a Monte Carlo optimization procedure and a free energy function based primarily on Lennard–Jones packing interactions and the Lazaridis–Karplus implicit solvation model. Remarkably, in the designed sequences 51% of the core residues and 27% of all residues were identical to the amino acids in the corresponding positions in the native sequences. The lowest free energy sequences obtained for ensembles of native-like backbone structures were also similar to the native sequence. Furthermore, both the individual residue frequencies and the covariances between pairs of positions observed in the very large SH3 domain family were recapitulated in core sequences designed for SH3 domain structures. Taken together, these results suggest that the volume of sequence space optimal for a protein structure is surprisingly restricted to a region around the native sequence.

Maternal effort mediates the prevalence of trypanosomes in the offspring of a passerine bird.

The relationships between parental effort, offspring growth, and offspring blood parasitemias are poorly known. We examined the effect of parental effort on offspring size and prevalence of trypanosomes in peripheral blood of nestling Pied Flycatchers Ficedula hypoleuca aged 13 days. Trypanosome infections were likely to be shared by siblings, indicating the role of a common environment and/or shared genes in the susceptibility to infection. Broods infected by trypanosomes had reduced growth, but this was due to decreased parental, especially maternal, energy expenditure in broods with nestlings infected by trypanosomes. There was no association between parental infection with trypanosomes and both their energy expenditure and the infection of their broods. Under stressful conditions caused by low maternal energy expenditure, the immune response of nestlings during growth was probably impaired, in a way analogous to the relapses of blood parasitemias with reproductive effort in breeding animals.

Dated co-occurrence of Homo erectus and Gigantopithecus from Tham Khuyen Cave, Vietnam.

Tham Khuyen Cave (Lang Son Province, northern Vietnam) is one of the more significant sites to yield fossil vertebrates in east Asia. During the mid-1960s, excavation in a suite of deposits produced important hominoid dental remains of middle Pleistocene age. We undertake more rigorous analyses of these sediments to understand the fluvial dynamics of Pleistocene cave infilling as they determine how skeletal elements accumulate within Tham Khuyen and other east Asian sites. Uranium/thorium series analysis of speleothems brackets the Pleistocene chronology for breaching, infilling, and exhuming the regional paleokarst. Clast analysis indicates sedimentary constituents, including hominoid teeth and cranial fragments accumulated from very short distances and under low fluvial energy. Electron spin resonance analysis of vertebrate tooth enamel and sediments shows that the main fossil-bearing suite (S1-S3) was deposited about 475 thousand years ago. Among the hominoid teeth excavated from S1-S3, some represent Homo erectus and Gigantopithecus blacki. Criteria are defined to differentiate these teeth from more numerous Pongo pygmaeus elements. The dated co-occurrence of Homo erectus and Gigantopithecus blacki at Tham Khuyen helps to establish the long co-existence of these two species throughout east Asia during the Early and Middle Pleistocene.