Towards the automatic reconstruction of dendritic trees using particle filters

The 3D reconstruction of a Golgi-stained dendritic tree from a serial stack of images captured with a transmitted light bright-field microscope is investigated. Modifications to the bootstrap filter are discussed such that the tree structure may be estimated recursively as a series of connected segments. The tracking performance of the bootstrap particle filter is compared against Differential Evolution, an evolutionary global optimisation method, both in terms of robustness and accuracy. It is found that the particle filtering approach is significantly more robust and accurate for the data considered.

Solving surface structures from normal incidence X-ray standing wave data

A program is provided to determine structural parameters of atoms in or adsorbed on surfaces by refinement of atomistic models towards experimentally determined data generated by the normal incidence X-ray standing wave (NIXSW) technique. The method employs a combination of Differential Evolution Genetic Algorithms and Steepest Descent Line Minimisations to provide a fast, reliable and user friendly tool for experimentalists to interpret complex multidimensional NIXSW data sets.

Single tap identification for fast BCI control

One of the major aims of BCI research is devoted to achieving faster and more efficient control of external devices. The identification of individual tap events in a motor imagery BCI is therefore a desirable goal. EEG is recorded from subjects performing and imagining finger taps with their left and right hands. A Differential Evolution based feature selection wrapper is used in order to identify optimal features in the spatial and frequency domains for tap identification. Channel-frequency band combinations are found which allow differentiation of tap vs. no-tap control conditions for executed and imagined taps. Left vs. right hand taps may also be differentiated with features found in this manner. A sliding time window is then used to accurately identify individual taps in the executed tap and imagined tap conditions. Highly statistically significant classification accuracies are achieved with time windows of 0.5 s and more allowing taps to be identified on a single trial basis.

Decomposition of surface electromyographic signal using Hidden Markov Model

The detection of physiological signals from the motor system (electromyographic signals) is being utilized in the practice clinic to guide the therapist in a more precise and accurate diagnosis of motor disorders. In this context, the process of decomposition of EMG (electromyographic) signals that includes the identification and classification of MUAP (Motor Unit Action Potential) of a EMG signal, is very important to help the therapist in the evaluation of motor disorders. The EMG decomposition is a complex task due to EMG features depend on the electrode type (needle or surface), its placement related to the muscle, the contraction level and the health of the Neuromuscular System. To date, the majority of researches on EMG decomposition utilize EMG signals acquired by needle electrodes, due to their advantages in processing this type of signal. However, relatively few researches have been conducted using surface EMG signals. Thus, this article aims to contribute to the clinical practice by presenting a technique that permit the decomposition of surface EMG signal via the use of Hidden Markov Models. This process is supported by the use of differential evolution and spectral clustering techniques. The developed system presented coherent results in: (1) identification of the number of Motor Units actives in the EMG signal; (2) presentation of the morphological patterns of MUAPs in the EMG signal; (3) identification of the firing sequence of the Motor Units. The model proposed in this work is an advance in the research area of decomposition of surface EMG signals.

Network reconfiguration of distribution systems using metaheuristics and reliability measures

In an evermore competitive environment, power distribution companies need to continuously monitor and improve the reliability indices of their systems. The network reconfiguration (NR) of a distribution system is a technique that well adapts to this new deregulated environment for it allows improvement of system reliability indices without the onus involved in procuring new equipment. This paper presents a reliability-based NR methodology that uses metaheuristic techniques to search for the optimal network configuration. Three metaheuristics, i.e. Tabu Search, Evolution Strategy, and Differential Evolution, are tested using a Brazilian distribution network and the results are discussed. © 2009 IEEE.

Genes candidatos a marcadores tumorais na progressão do adenocarcinoma de próstata indentificados por análise de HR-CGH e CGH-ARRAY

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Métodos de otimização global aplicados na busca dos parâmetros SRC

O método de empilhamento por Superfície de Reflexão Comum (SRC) produz seções simuladas de afastamento nulo (AN) por meio do somatório de eventos sísmicos dos dados de cobertura múltipla contidos nas superfícies de empilhamento. Este método não depende do modelo de velocidade do meio, apenas requer o conhecimento a priori da velocidade próxima a superfície. A simulação de seções AN por este método de empilhamento utiliza uma aproximação hiperbólica de segunda ordem do tempo de trânsito de raios paraxiais para definir a superfície de empilhamento ou operador de empilhamento SRC. Para meios 2D este operador depende de três atributos cinemáticos de duas ondas hipotéticas (ondas PIN e N), observados no ponto de emergência do raio central com incidência normal, que são: o ângulo de emergência do raio central com fonte-receptor nulo (β₀) , o raio de curvatura da onda ponto de incidência normal (R_PIN) e o raio de curvatura da onda normal (R_N). Portanto, o problema de otimização no método SRC consiste na determinação, a partir dos dados sísmicos, dos três parâmetros (β₀, R_PIN, R_N) ótimos associados a cada ponto de amostragem da seção AN a ser simulada. A determinação simultânea destes parâmetros pode ser realizada por meio de processos de busca global (ou otimização global) multidimensional, utilizando como função objetivo algum critério de coerência. O problema de otimização no método SRC é muito importante para o bom desempenho no que diz respeito a qualidade dos resultados e principalmente ao custo computacional, comparado com os métodos tradicionalmente utilizados na indústria sísmica. Existem várias estratégias de busca para determinar estes parâmetros baseados em buscas sistemáticas e usando algoritmos de otimização, podendo estimar apenas um parâmetro de cada vez, ou dois ou os três parâmetros simultaneamente. Levando em conta a estratégia de busca por meio da aplicação de otimização global, estes três parâmetros podem ser estimados através de dois procedimentos: no primeiro caso os três parâmetros podem ser estimados simultaneamente e no segundo caso inicialmente podem ser determinados simultaneamente dois parâmetros (β₀, R_PIN) e posteriormente o terceiro parâmetro (R_N) usando os valores dos dois parâmetros já conhecidos. Neste trabalho apresenta-se a aplicação e comparação de quatro algoritmos de otimização global para encontrar os parâmetros SRC ótimos, estes são: Simulated Annealing (SA), Very Fast Simulated Annealing (VFSA), Differential Evolution (DE) e Controlled Rando Search - 2 (CRS2). Como resultados importantes são apresentados a aplicação de cada método de otimização e a comparação entre os métodos quanto a eficácia, eficiência e confiabilidade para determinar os melhores parâmetros SRC. Posteriormente, aplicando as estratégias de busca global para a determinação destes parâmetros, por meio do método de otimização VFSA que teve o melhor desempenho foi realizado o empilhamento SRC a partir dos dados Marmousi, isto é, foi realizado um empilhamento SRC usando dois parâmetros (β₀, R_PIN) estimados por busca global e outro empilhamento SRC usando os três parâmetros (β₀, R_PIN, R_N) também estimados por busca global.

A boundary value problem approach to too-short arc optical track association

Given a short-arc optical observation with estimated angle-rates, the admissible region is a compact region in the range / range-rate space defined such that all likely and relevant orbits are contained within it. An alternative boundary value problem formulation has recently been proposed where range / range hypotheses are generated with two angle measurements from two tracks as input. In this paper, angle-rate information is reintroduced as a means to eliminate hypotheses by bounding their constants of motion before a more computationally costly Lambert solver or differential correction algorithm is run.

Parallel Problem Solving from Nature – PPSN XIV:14th International Conference, Edinburgh, UK, September 17-21, 2016, Proceedings

This book constitutes the refereed proceedings of the 14th International Conference on Parallel Problem Solving from Nature, PPSN 2016, held in Edinburgh, UK, in September 2016. The total of 93 revised full papers were carefully reviewed and selected from 224 submissions. The meeting began with four workshops which offered an ideal opportunity to explore specific topics in intelligent transportation Workshop, landscape-aware heuristic search, natural computing in scheduling and timetabling, and advances in multi-modal optimization. PPSN XIV also included sixteen free tutorials to give us all the opportunity to learn about new aspects: gray box optimization in theory; theory of evolutionary computation; graph-based and cartesian genetic programming; theory of parallel evolutionary algorithms; promoting diversity in evolutionary optimization: why and how; evolutionary multi-objective optimization; intelligent systems for smart cities; advances on multi-modal optimization; evolutionary computation in cryptography; evolutionary robotics - a practical guide to experiment with real hardware; evolutionary algorithms and hyper-heuristics; a bridge between optimization over manifolds and evolutionary computation; implementing evolutionary algorithms in the cloud; the attainment function approach to performance evaluation in EMO; runtime analysis of evolutionary algorithms: basic introduction; meta-model assisted (evolutionary) optimization. The papers are organized in topical sections on adaption, self-adaption and parameter tuning; differential evolution and swarm intelligence; dynamic, uncertain and constrained environments; genetic programming; multi-objective, many-objective and multi-level optimization; parallel algorithms and hardware issues; real-word applications and modeling; theory; diversity and landscape analysis.

Modelling of microstructure formation and evolution during solidification

A comprehensive probabilistic model for simulating microstructure formation and evolution during solidification has been developed, based on coupling a Finite Differential Method (FDM) for macroscopic modelling of heat diffusion to a modified Cellular Automaton (mCA) for microscopic modelling of nucleation, growth of microstructures and solute diffusion. The mCA model is similar to Nastac's model for handling solute redistribution in the liquid and solid phases, curvature and growth anisotropy, but differs in the treatment of nucleation and growth. The aim is to improve understanding of the relationship between the solidification conditions and microstructure formation and evolution. A numerical algorithm used for FDM and mCA was developed. At each coarse scale, temperatures at FDM nodes were calculated while nucleation-growth simulation was done at a finer scale, with the temperature at the cell locations being interpolated from those at the coarser volumes. This model takes account of thermal, curvature and solute diffusion effects. Therefore, it can not only simulate microstructures of alloys both on the scale of grain size (macroscopic level) and the dendrite tip length (mesoscopic level), but also investigate nucleation mechanisms and growth kinetics of alloys solidified with various solute concentrations and solidification morphologies. The calculated results are compared with values of grain sizes and solidification morphologies of microstructures obtained from a set of casting experiments of Al-Si alloys in graphite crucibles.

Algorithm to determine the intersection curves between bezier surfaces by the solution of multivariable polynomial system and the differential marching method

The determination of the intersection curve between Bézier Surfaces may be seen as the composition of two separated problems: determining initial points and tracing the intersection curve from these points. The Bézier Surface is represented by a parametric function (polynomial with two variables) that maps a point in the tridimensional space from the bidimensional parametric space. In this article, it is proposed an algorithm to determine the initial points of the intersection curve of Bézier Surfaces, based on the solution of polynomial systems with the Projected Polyhedral Method, followed by a method for tracing the intersection curves (Marching Method with differential equations). In order to allow the use of the Projected Polyhedral Method, the equations of the system must be represented in terms of the Bernstein basis, and towards this goal it is proposed a robust and reliable algorithm to exactly transform a multivariable polynomial in terms of power basis to a polynomial written in terms of Bernstein basis .

Differential Evolutionary Constraints in the Evolution of Chemoreceptors: A Murine and Human Case Study

Chemoreception is among the most important sensory modalities in animals. Organisms use the ability to perceive chemical compounds in all major ecological activities. Recent studies have allowed the characterization of chemoreceptor gene families. These genes present strikingly high variability in copy numbers and pseudogenization degrees among different species, but the mechanisms underlying their evolution are not fully understood. We have analyzed the functional networks of these genes, their orthologs distribution, and performed phylogenetic analyses in order to investigate their evolutionary dynamics. We have modeled the chemosensory networks and compared the evolutionary constraints of their genes in Mus musculus, Homo sapiens, and Rattus norvegicus. We have observed significant differences regarding the constraints on the orthologous groups and network topologies of chemoreceptors and signal transduction machinery. Our findings suggest that chemosensory receptor genes are less constrained than their signal transducing machinery, resulting in greater receptor diversity and conservation of information processing pathways. More importantly, we have observed significant differences among the receptors themselves, suggesting that olfactory and bitter taste receptors are more conserved than vomeronasal receptors.