Field data on methane fluxes, temperature, soil gas profiles and microbial activities in ponds of the northeast Siberian polygonal tundra

The data files give the basic field and laboratory data on five ponds in the northeast Siberian Arctic tundra on Samoylov. The files contain water and soil temperature data of the ponds, methane fluxes, measured with closed chambers in the centres without vascular plants and the margins with vascular plants, the contribution of plant mediated fluxes on total methane fluxes, the gas concentrations (methane and dissolved inorganic carbon, oxygen) in the soil and the water column of the ponds, microbial activities (methane production, methane oxidation, aerobic and anaerobic carbon dioxide production), total carbon pools in the different horizons of the bottom soils, soil bulk density, soil substance density, and soil porosity.

Investigating the Function of a Small Secreted Protein Family in Physcomitrella Patens

The correct development of multicellular organisms depends upon the perception of signals secreted by cells in order to co-ordinate cell differentiation. The Physcomitrella patens genome encodes many components of potential signaling systems, including putative receptor proteins and putative secreted protein ligands, yet at present little characterization of these proteins has been carried out. We are currently attempting to characterize the expression pattern and function of a family of 6 secreted proteins exhibiting homology to PrsS, the ligand that controls self-incompatibility (SI) in Papaver rhoeas (field poppy). In poppy, PrsS interacts a receptor on the surface of pollen tubes, PrpS causing SI by programmed cell death. Homologues of this protein (SPH – S-Protein Homologues) exist in dicotyledonous plants and bryophytes but not in other plant taxa. We aim to determine spatiotemporal expression differences between these proteins via reporter gene analysis and qPCR of cDNA. In addition we are in the process of creating targeted gene knockouts for all 6 of the genes in P. patens. We are also searching for receptors of PrpS in Physcomitrella using a bioinformatic strategy alongside phage display. In accomplishing this we hope to determine the function of a small novel secreted protein family in Physcomitrella but in addition we also hope to elucidate the function of SPH proteins in Arabidopsis.

Florística e ecologia de briófitas em um fragmento de restinga no extremo sul do Brasil

A Área de Proteção Ambiental da Lagoa Verde é composta por um mosaico de unidades ambientais. Entre elas, destaca-se um fragmento de mata de restinga que reúne características físicas e microclimáticas para o estudo de ecologia de briófitas. Este estudo teve por objetivo realizar o levantamento das espécies de briófitas; fornece novas ocorrências de briófitas para o Rio Grande do Sul; avaliar a influência dos gradientes longitudinal e vertical na distribuição de briófitas; quantificar a variação da diversidade de briófitas nos gradientes longitudinal e vertical. Foram identificadas 51 espécies de briófitas como novas ocorrências para o Rio Grande do Sul, sendo 11 musgos e 40 hepáticas. Além do local de estudo foram identificadas espécies que estavam no herbário SP. No estudo dos gradientes longitudinal e vertical foram identificadas 53 espécies de briófitas, sendo 17 musgos e 36 hepáticas. Através da análise dos transectos e da inclusão dos forófitos subdivididos em três zonas de altura, foram coletadas amostras terrícolas e corticícolas. As briófitas respondem aos gradientes, através dos fatores microclimáticos (luminosidade e umidade), em relação ao aumento da riqueza e mudança na composição de espécies. A partição aditiva da diversidade de briófitas quantificou a variação da composição de espécies em cada gradiente. A diversidade entre cada nível dos gradientes longitudinal (umidade) e vertical (luminosidade) variou em torno de 40% e 50%, respectivamente. Em conclusão, o estudo sobre a ecologia de briófitas gerou conhecimento sobre a diversidade e biogeografia das espécies; contribuiu para o entendimento da distribuição das briófitas em função dos gradientes longitudinal e vertical, por influência de fatores microclimáticos e; revelou a variação da composição de espécies em função dos gradientes horizontal (umidade) e vertical (luminosidade).

USING MOSSES TO ASSESS CONDITIONS IN NORTHERN WHITE CEDAR SWAMPS

Northern white cedar (Thuja occidentalis L.) (NWC) swamps are valuable both commercially and ecologically. Unfortunately, many NWC swamps are degraded and information about them is not abundant. Especially there have been no definitive studies about mosses in northern white cedar swamps and how they react to disturbances. Mosses are sensitive to changes in their environment and thus they could be used to assess ecosystem conditions of NWC swamps. The objective of this study was to determine if mosses could be used to asses conditions in NWC swamps and if there are differences between moss communities in disturbed and undisturbed sites. Seventeen sample plots were taken from 12 disturbed and undisturbed sites around upper Michigan and northern Minnesota in the summer of 2012. All mosses occurring on the plots were identified and several associated environmental parameters were measured. The main environmental conditions affecting moss communities were identified with non-metric multidimensional scaling (NMS). Multiple response permutation procedures (MRPP) were run to ascertain if there were significant differences in community composition between disturbances. Indicator species analysis was then done to identify species that are related to different types of disturbances. A one-way ANOVA was used to check for significant differences between species richness and moss cover of undisturbed and disturbed sites. Over all sixty-two moss species were identified. The results indicate that there was no significant difference in species richness or moss cover between disturbed and undisturbed sites. However, moss community composition was affected by disturbance and strongly divided by a wetness gradient. Dicranum fuscescens was found to indicate undisturbed conditions. Calliergon cordifolium and Climacium dendroides indicated disturbed sites with wet conditions. Brotherella recurvans and Eurhynchium pulchellum indicated swamps with other disturbances.

A Transcriptome Atlas of Physcomitrella patens Provides Insights into the Evolution and Development of Land Plants

Post-print version of the article.