Understanding file access mechanisms for embedded ubicomp collaboration interfaces

This paper explores the nature of interfaces to support people in accessing their files at tabletop displays embedded in the environment. To do this, we designed a study comparing people's interaction with two very different classes of file system access interface: Focus, explicitly designed for tabletops, and the familiar hierarchical Windows Explorer. In our within-subjects double-crossover study, participants collaborated on 4 planning tasks. Based on video, logs, questionnaires and interviews, we conclude that both classes of interface have a place. Notably, Focus contributed to improved collaboration and more efficient use of the workspace than with Explorer. Our results inform a set of recommendations for future interfaces enabling this important class of interaction -- supporting access to files for collaboration at tabletop devices embedded in an ubicomp environment.

New genetic loci link adipose and insulin biology to body fat distribution

Body fat distribution is a heritable trait and a well-established predictor of adverse metabolic outcomes, independent of overall adiposity. To increase our understanding of the genetic basis of body fat distribution and its molecular links to cardiometabolic traits, here we conduct genome-wide association meta-analyses of traits related to waist and hip circumferences in up to 224,459 individuals. We identify 49 loci (33 new) associated with waist-to-hip ratio adjusted for body mass index (BMI), and an additional 19 loci newly associated with related waist and hip circumference measures (P < 5 × 10−8). In total, 20 of the 49 waist-to-hip ratio adjusted for BMI loci show significant sexual dimorphism, 19 of which display a stronger effect in women. The identified loci were enriched for genes expressed in adipose tissue and for putative regulatory elements in adipocytes. Pathway analyses implicated adipogenesis, angiogenesis, transcriptional regulation and insulin resistance as processes affecting fat distribution, providing insight into potential pathophysiological mechanisms.

Genetic studies of body mass index yield new insights for obesity biology

Obesity is heritable and predisposes to many diseases. To understand the genetic basis of obesity better, here we conduct a genome-wide association study and Metabochip meta-analysis of body mass index (BMI), a measure commonly used to define obesity and assess adiposity, in up to 339,224 individuals. This analysis identifies 97 BMI-associated loci (P < 5 × 10−8), 56 of which are novel. Five loci demonstrate clear evidence of several independent association signals, and many loci have significant effects on other metabolic phenotypes. The 97 loci account for ~2.7% of BMI variation, and genome-wide estimates suggest that common variation accounts for >20% of BMI variation. Pathway analyses provide strong support for a role of the central nervous system in obesity susceptibility and implicate new genes and pathways, including those related to synaptic function, glutamate signalling, insulin secretion/action, energy metabolism, lipid biology and adipogenesis.

The Role Of Fumarase (FH) In Tumorigenesis

In this study, a predisposing gene for a recently characterized cancer syndrome, hereditary leiomyomatosis and renal cell cancer (HLRCC), was identified and the role of the gene was investigated in other familial cancers and in nonsyndromic tumorigenesis. HLRCC is a dominantly inherited disorder predisposing predominantly to uterine and skin leiomyomas, and also to renal cell cancer and uterine leiomyosarcoma. The disease gene was recently localized in Finnish families to 1q42-q43 by a genome-wide linkage search. Independently in the UK, a clinically similar condition, multiple cutaneous and uterine leiomyomata (MCUL), was linked to the same chromosomal region, strongly suggesting that HLRCC and MCUL are actually a single syndrome. Linkage results were confirmed by detecting loss of heterozygosity (LOH) at the disease locus in most of the patients' tumors, suggesting that this predisposing gene acts as a tumor suppressor. Through detailed investigation by genotyping of microsatellite markers and haplotype construction in Finnish and UK HLRCC/MCUL families we were able to narrow the disease locus down to 1.6 Mb. Extensive mutation screening of known and predicted transcripts in the target region resulted in identification of the HLRCC predisposing gene, fumarase (fumarate hydratase, FH). FH is a key enzyme in energy metabolism, catalyzing fumarate to malate in the tricarboxylic acid cycle (TCAC) in mitochondria. Germline alterations in FH segregating with the disease were detected in 25 of 42 HLRCC/MCUL families including whole-gene deletions, truncating small deletions/insertions and nonsense mutations, as well as substitutions or deletions of highly conserved amino acids. Biallelic inactivation was detected in almost all studied tumors of HLRCC patients. Furthermore, FH enzyme activity was reduced in the patients' normal tissues and was completely or virtually absent from tumors. Based on these findings, we extensively demonstrated that mutations in FH underlie the HLRCC/MCUL syndrome. In our studies of other familial cancers, evidence for involvement of FH defects was not found in familial prostate and breast cancers. To investigate the role of FH in sporadic tumorigenesis, we analyzed 652 lesions, including a series of 353 nonsyndromic counterparts of tumor types associated with HLRCC. Mutations in nonsyndromic tumors were rare and appeared to be limited to tumor types observed in the hereditary form of the disease. Biallelic inactivation of FH was detected in a uterine leiomyosarcoma, a cutaneous leiomyoma, a soft-tissue sarcoma, and in two uterine leiomyomas. In the uterine leiomyosarcoma and the cutaneous lesion FH mutations originated from the germline whereas the soft-tissue sarcoma harbored purely somatic changes. In uterine leiomyomas somatic mutations were detected in the two out of five tumors with LOH at the FH locus. Our findings demonstrate that FH inactivation is also involved in nonhereditary tumor development, and further support the hypothesis that FH acts as a tumor suppressor. The role of FH in predisposition to malignancies, renal cell carcinoma and leiomyosarcoma is important in the diagnosis and prevention of cancer among HLRCC patients. This study is of general clinical interest, because prior to our findings, little was known about the molecular genetics of uterine leiomyomas, the most common tumors of women.

Ion irradiation as a tool for modifying the surface and optical properties of plasma polymerised thin films

Radio frequency (R.F.) glow discharge polyterpenol thin films were prepared on silicon wafers and irradiated with I10+ ions to fluences of 1 × 1010 and 1 × 1012 ions/cm2. Post-irradiation characterisation of these films indicated the development of well-defined nano-scale ion entry tracks, highlighting prospective applications for ion irradiated polyterpenol thin films in a variety of membrane and nanotube-fabrication functions. Optical characterisation showed the films to be optically transparent within the visible spectrum and revealed an ability to selectively control the thin film refractive index as a function of fluence. This indicates that ion irradiation processing may be employed to produce plasma-polymer waveguides to accommodate a variety of wavelengths. XRR probing of the substrate-thin film interface revealed interfacial roughness values comparable to those obtained for the uncoated substrate's surface (i.e., both on the order of 5 Å), indicating minimal substrate etching during the plasma deposition process.

Bioavailability aspects of hydrophobic contaminant degradation in soils

This thesis concentrates on bioavailability of organic soil contaminants in the context of bioremediation of soil contaminated with volatile or non-volatile hydrophobic pollutants. Bioavailability and biodegradation was studied from four viewpoints: (i) Improvement of bioavailability and biodegradation of volatile hydrocarbons in contained bioremediation systems at laboratory - and pilot-scale. (ii) Improvement of bioavailability of non-volatile, hydrophobic compounds in such systems. (iii) Biodegradation of a non-volatile hydrophobic compound in soil organic matter in microcosms. (iiii) Bioavailability of nitrogen in an open, full-scale bioremediation system. It was demonstrated that volatility of organic compounds can be controlled by amending the soil with adsorbents. The sorbed hydrocarbons were shown to be available to soil microbiota. As the result, biodegradation of the volatile hydrocarbons was greatly favored at the expense of volatilization. PAH compounds were shown to be mobilized and their bioavailability improved by a hydrophobic, non-toxic additive, vegetable oil. Bioavailability of the PAHs was recorded as an increased toxicity of the soil. In spite of the increased bioavailability, biodegradation of the PAHs decreased. In microcosms simulating boreal forest organic surface soil, PAH-compound (pyrene) was shown to be removed from soil biologically. Therefore hydrophobicity of the substrate does not necessarily mean low availability and biodegradation in organic soil. Finally, in this thesis it was demonstrated that an unsuitable source of nitrogen or its overdose resulted in wasteful spending of this nutrient and even harmful effects on soil microbes. Such events may inhibit rather than promote the bioremediation process in soil.

Effects of compressibility and heat release on entrainment processes in mixing layers

Characteristics of the process of entrainment in plane mixing layers, and the changes with compressibility and heat release, were studied using temporal DNS with simultaneous fluid packet tracking. Convective Mach numbers of the simulations are 0.15, 0.7 and 1.1. The Reynolds number is quite high (between 11 000 and 37 000 based on layer width and velocity difference), and is above the mixing transition. The study agrees with recent findings in round jets: first, engulfed fluid volume and its growth rate are both very small compared with the volume of the turbulent region and its growth rate, respectively. Secondly, most often, the process occurs close to the turbulent-nonturbulent boundaries. A new finding is that both compressibility and heat release retard the entrainment process so that it takes an O(1) time for vorticity or scalar levels to grow even after growth has been initiated. This delay is manifested as the fall in mixing layer growth rates as compressibility and heat release levels increase.

Der Haftwasseranteil bei Heringsanlandungen über Bandwaagen

In 2004 the fish processing company Euro-Baltic Fischverarbeitungs GmbH Mukran, went into operation on the Isle of Rügen at the Baltic coast of Germany. About 20 % of the herring landed there is discharged from the cutters into the processing plant by pipes, driven by pumps, in case that the landed volume exceeds 10 t fresh weight. In such case the herring is transported in water suspension by means of a pressure-vacuum suction pump system into containers and further transported via conveyer belt to a flowscale. During this process most of the water runs off. It is however unknown how much water remains with the fish and is eventually weighted as fish. To estimate this proportion the mixture of water and fish was stored in special transport containers, which allow the measurement of the run-off. As a result the study shows that on average 2 % of weight measured by the tape scale is water. Along with this factors were determined which influence the variability of the proportion of water.

Der Anteil Transportwasser bei Heringsanlandungen mittels Vakuumsauganlage in Großraumbehältern

Estimation of the water content of herring landings caused by pressure-vacuum double tank pumps and using of multi purpose transport containers About 80 % of herring that is landed in the fish processing company Euro-Baltic Fischverarbeitungs GmbH Mukran, on the Isle of Rügen at the Baltic coast is transported from the cutter into the processing plant by pumping. For this purpose 700 l-Euro-size polyethylene tubs (containers) are filled with herring by means of a pressure-vacuum pump-systems during the unloading of the cutter. To be able to pump the fish from the hold on board it is kept floating in water (transport water). At the end of the pumping/transporting process the fish ends in a dewatering box before reaching the tub, where the transport water is separated from the fish. Then, the not completely dewatered fish is slipped into the transport containers. The amount of transport water reaching the containers depends on the type of PV-equipment and on the amount of transport water in the fish holds of the different cutters. Methodologically the mixture of fish and water must be weighed together. For the experiments specially designed transport container were used which allow the measurement of the run-off of the water to be quantified and thus to measure the proportion of water remaining with the fish. Based on 30 experiments it could be shown that on average 6 % of remaining weight of the mixture is water. Furthermore, factors were detected which influence the variability of the proportion of water.

Die Reproduktion von Dorschen (Gadus morhua L. und Gadus morhua callarias L. ) in der Ostsee unter besonderer Berücksichtigung der Arkonasee. Teil I: Allgemeiner Verlauf des jährlichen Reifeprozesses und der Laichaktivitäten in den verschiedenen Gebieten

From 1993 to 2003 special surveys were conducted to analyse temporal and spatial aspects of the spawning activities of cod in the Baltic Sea. The ICES advice for cod in the Baltic Sea is based on yearly stock assessments of two separate stocks the western (SD 22 – 24) and the eastern stock (SD 25 – 32). Both stocks are characterized by different spawning seasons. The general progression of the maturity suggests that two types of development can be distinguished. In the western Baltic Sea (SD 22) the maturity development is temporal stable, with a relative short, main spawning period from March to April - spring spawner. In the Arkona Sea and Bornholm Basin the main spawning season starts in June and probably finishes in September - summer spawner. The proportion of spawners in summer is significantly higher than in spring in the Arkona Sea and Bornholm Basin. This again underlines the importance of the Arkona Sea for the reproduction success of the eastern Baltic cod stock. The analysis furthermore show, that the proportion of male spawners was significantly higher than the proportion of female spawners in all areas and the investigated months. This observation suggests that the reproductive success is only limited by the number of female cod which participates in the spawning process.

Die Reproduktion von Dorschen (Gadus morhua L. und Gadus morhua callarias L.) in der Ostsee unter besonderer Berücksichtigung der Arkonasee. Teil II: Statistische Analysen zum Anteil reproduktiv aktiver Dorsche in Bezug auf gebietsspezifische Unterschiede und Gemeinsamkeiten, sowie deren mögliche Ursachen.

Surveys were conducted to analyse temporal and spatial aspects of the spawning activities of cod in the Baltic Sea from 1993 to 2003. Part I of the article describes the general maturity development and the spawning activities in the western Baltic Sea, the Arkona Sea and the Bornholm Sea. The studies suggest that two types of spawner can be distinguished, the spring spawner in the western Baltic Sea and the summer spawner in the Arkona Sea and the Bornholm Basin. The descriptive analysis is supported by statistical studies presented in this article. It is shown, that the proportion of spawning individuals is significantly higher in summer than in spring in the ArkonaSea and the Bornholm Sea. Furthermore, it is shown that reproductive mixing of both types of spawner is possible in the Arkona Sea in May/June due to the hydrographical conditions in the Arkona Sea which were suitable in 8 of 10 years for successful reproduction of both Baltic cod stocks, and that spatial expansion of spawning activities of the eastern Baltic cod stock into the Arkona Sea is positive correlated with the size of spawning stock in the Bornholm Sea.

Eine Chance fur eine positive Bestandsentwicklung in der Ostsee? Hoffnungswoller Dorschjahrgang in der Ostee bestagtigt

Der Stratified Random Survey, der vom 22. 10. bis 3.11. 2004 in der Arkonasee, Kieler und Mecklenburger Bucht durchgef

10 Jahre Untersuchungen zur Reproduktionsbiologie des Dorsches im Institut für Ostseefischerei

The reproduction biology of cod is one of the main re-search topics of the Institute of Baltic Sea Fisheries at Rostock. It was defined 10 years ago when the Institute was formed. Since then results have been published in a number of publications. This paper summarizes the main results of the past decade ant outlines necessities for future research in cod reproduction biology in the Baltic Sea.

Die Fruchtbarkeit von Dorschen in der Ostsee - was verrät sie uns?

About 1500 ovaries of Baltic cod were prepared for estimating the potential absolute and relative individual fecundity. The female cod were sampled in the Belt Sea, ICES Subdivision (SD) 22, in the Arkona Sea, SD 24, and in the Bornholm Sea, SD 25. The investigations started in1992 and until 1999 cruises were carried out to catch female cod in the different sub-divisions every year. The results shows that the potential fecundity is not a stable biological parameter, and that significant changes are possible within a relative short period. It was demonstrated that the developments of the potential individual fecundity of the western (Gadus morhua morhua) and eastern Baltic cod stocks (Gadus morhua callarias) were different. In contrast to the stable individual fecundity of the western cod the absolute and relative fecundity of the eastern repeat spawners increased from 1993 to 1999, significantly. The reason of this development seems to be the dramatic decrease of the eastern cod stock and the more successful reproduction of individuals that produce oocytes with a lower dry weight in combination with a higher relative fecundity.