A secreted Salmonella protein with homology to an avirulence determinant of plant pathogenic bacteria

Bacterial pathogens have evolved sophisticated mechanisms to interact with their hosts. A specialized type III protein secretion system capable of translocating bacterial proteins into host cells has emerged as a central factor in the interaction between a variety of mammalian and plant pathogenic bacteria with their hosts. Here we describe AvrA, a novel target of the centisome 63 type III protein secretion system of Salmonella enterica. AvrA shares sequence similarity with YopJ of the animal pathogen Yersinia pseudotuberculosis and AvrRxv of the plant pathogen Xanthomonas campestris pv. vesicatoria. These proteins are the first examples of putative targets of type III secretion systems in animal and plant pathogenic bacteria that share sequence similarity. They may therefore constitute a novel family of effector proteins with related functions in the cross-talk of these pathogens with their hosts.

Expression of the Bs2 pepper gene confers resistance to bacterial spot disease in tomato

The Bs2 resistance gene of pepper specifically recognizes and confers resistance to strains of Xanthomonas campestris pv. vesicatoria that contain the corresponding bacterial avirulence gene, avrBs2. The involvement of avrBs2 in pathogen fitness and its prevalence in many X. campestris pathovars suggests that the Bs2 gene may be durable in the field and provide resistance when introduced into other plant species. Employing a positional cloning strategy, the Bs2 locus was isolated and the gene was identified by coexpression with avrBs2 in an Agrobacterium-mediated transient assay. A single candidate gene, predicted to encode motifs characteristic of the nucleotide binding site–leucine-rich repeat class of resistance genes, was identified. This gene specifically controlled the hypersensitive response when transiently expressed in susceptible pepper and tomato lines and in a nonhost species, Nicotiana benthamiana, and was designated as Bs2. Functional expression of Bs2 in stable transgenic tomatoes supports its use as a source of resistance in other Solanaceous plant species.

Identification of the causal agent of pistachio dieback in Australia

Symptoms associated with pistachio dieback in Australia include decline (little or no current season growth), xylem staining in shoots two or more years old, trunk mu and limb lesions (often covered by black, superficial fungal growth), excessive exudation of resin, dieback and death of the tree. Bacteria belonging to the genus Xanthomonas have been suggested as the causal agent. To confirm the constant association between these bacteria and the disease syndrome, the absence of other pathogens and the identity of the pathogen, we performed a series of isolations and pathogenicity tests. The only microorganism consistently isolated from diseased tissue was a bacterium that produced yellow, mucoid colonies and displayed morphological and cultural characteristics typical of the genus Xanthomonas. Database comparisons of the fatty acid and whole-cell protein profiles of five representative pistachio isolates indicated that they all belonged to X. translucens, but it was not possible to allocate the isolates to pathovar. Pathogenicity tests on cereals and grasses supported this identification. However, Koch's postulates have been only partially fulfilled because not all symptoms associated with pistachio dieback were reproduced on inoculated two-year-old pistachio trees. While discolouration was observed, dieback, excessive resinous exudate and trunk and limb lesions were not produced; expression of these symptoms may be delayed, and long-term monitoring of a small number of inoculated trees is in progress.

Produção de exopolissacarídeos bacterianos a partir de glicerol residual gerado na síntese de biodiesel

A busca por combustíveis alternativos, tais como os biocombustíveis, torna-se necessária devido à crescente demanda por combustíveis em todos os setores da atividade humana, sendo que quase toda energia consumida no mundo provém do petróleo, uma fonte limitada, que emite grande quantidade de gases poluentes. Devido à grande diversidade de culturas oleoginosas no país, o Brasil demonstra potencial para substituição do diesel pelo biodiesel. No processo de obtenção deste, o óleo vegetal sofre uma transesterificação, sob a ação de um catalisador básico e na presença de um álcool, formando três moléculas de ésteres metílicos ou etílicos de ácidos graxos, que constituem o biodiesel em sua essência, liberando uma molécula de glicerol, que é o coproduto mais abundante desta reação. Sendo assim, a utilização do glicerol residual é uma ótima alternativa para agregar valor à cadeia produtiva do biodiesel, minimizar os danos de um possível descarte inadequado, além de diminuir os custos do processo. Com este intuito, este trabalho propõe o uso do glicerol residual como fonte de carbono para produção de exopolissacarídeos (EPSs). Para tal, foram utilizadas linhagens de bactérias mencionadas na literatura como produtoras de EPSs de importância comercial, sendo elas: Xanthomonas campestris pv. mangiferaeindicae IBSBF 1230, Pseudomonas oleovarans NRRL B-14683, Sphingomonas capsulata NRRL B-4261 e Zymomonas mobilis NRRL B-4286. Os cultivos foram realizados em meio apropriado para cada micro-organismo, e como fontes de carbono foram testadas a sacarose, o glicerol residual e uma mistura de ambos na proporção de 1:1 m/m. Os meios foram inoculados com suspensão da bactéria em estudo, sendo avaliados parâmetros relativos ao crescimento celular e à produção de EPSs. Para X. campestris pv. mangiferaeindicae, foram determinadas algumas propriedades reológicas e térmicas dos EPSs produzidos com as diferentes fontes de carbono, bem como o índice de emulsificação com diferentes óleos vegetais. X. campestris apresentou uma concentração de EPSs em torno de 4 g.L-1 em todos os meios estudados, comportamento similar ao da bactéria P. oleovorans, diferindo apenas no meio contendo sacarose (0,8 g.L-1 ). S. capsulata apresentou uma maior concentração de EPSs em meios contendo sacarose e a mistura de sacarose com glicerol residual, em torno de 3,4 g.L-1 , e em meio contendo glicerol residual este valor caiu para 1,7 g.L-1 . Já Z. mobilis apresentou um melhor resultado em meio contendo sacarose e glicerol residual, atingindo 1,3 g.L-1 , sendo que em meio contendo somente sacarose e glicerol residual estes valores foram inferiores alcançando 0,2 e 0,7 g.L-1 , respectivamente. Quase todas as bactérias atingiram a fase estacionária em 24 h de cultivo e o pH permaneceu praticamente constante, sendo verificada uma queda mais acentuada somente para Z. mobilis. O comportamento reológico foi similar para as xantanas produzidas nos diferentes meios, entretanto a viscosidade inicial foi maior com o meio a sacarose (637 cP), seguido da mistura de sacarose com glicerol residual (279 cP) e glicerol residual (60 cP). O IE24 foi superior quando utilizado o óleo de milho, atingindo valores de 97, 72 e 64 % em sacarose, mistura de sacarose com glicerol e glicerol residual, respectivamente. Desta forma, pode-se afirmar que a mudança na fonte de carbono afeta estas propriedades.

Reação de genótipos de videira ao cancro bacteriano.

No Submédio do Vale do São Francisco, Nordeste do Brasil, o cancro bacteriano da videira causado pela Xanthomonas campestris pv. viticola ocasiona grandes prejuízos em genótipos suscetíveis. O objetivo foi avaliar à resistência de genótipos de videira quanto ao cancro bacteriano. Dois experimentos (I e II) com 17 e 36 genótipos, respectivamente, com cinco repetições, foram conduzidos em casa de vegetação com temperatura e umidade médias de 30ºC e 70%. As plantas foram inoculadas com suspensão do isolado bacteriano por fricção com gaze umedecidas com solução bacteriana (A570= 6×108 UFC/ml), incubadas e observadas diariamente quanto aos parâmetros pidemiológicos: período de incubação (PI); incidência de folhas com sintomas (INC); incidência de folhas com cancro (IFC); severidade da doença (SEV); e área abaixo da curva de progresso da SEV (AACPSD), calculada como ∑(yi+yi+1)/2dti. O delineamento estatístico foi inteiramente casualizado. Todos os genótipos foram suscetíveis ao patógeno, mas diferiram significativamente entre si (P=0,05). No grupo I destacaram Itália Melhorada e ?Red Globe? com níveis elevados para todos os parámetros, resultado observado no grupo II apenas para Red Globe. No experimento I, Petit Verdot, BRS Cora e Moscato apresentaram os maiores PI e os menores INC, IFC, SEV e AACPSD; já no experimento II, foram 12 genótipos com menores níveis para todas as variáveis, indicando grande potencial para melhoramento genético e manejo integrado. No agrupamento pelo UPGMA (similaridade 60%) formaram-se cinco grupos no experimento I; e seis no II.

Characterisation, cloning and production of industrially interesting enzymes: gluconolactone oxidase of Penicillium cyaneo-fulvum and gluconate 5-dehydrogenase of Gluconobacter suboxydans

The work covered in this thesis is focused on the development of technology for bioconversion of glucose into D-erythorbic acid (D-EA) and 5-ketogluconic acid (5-KGA). The task was to show on proof-of-concept level the functionality of the enzymatic conversion or one-step bioconversion of glucose to these acids. The feasibility of both studies to be further developed for production processes was also evaluated. The glucose - D-EA bioconversion study was based on the use of a cloned gene encoding a D-EA forming soluble flavoprotein, D-gluconolactone oxidase (GLO). GLO was purified from Penicillium cyaneo-fulvum and partially sequenced. The peptide sequences obtained were used to isolate a cDNA clone encoding the enzyme. The cloned gene (GenBank accession no. AY576053) is homologous to the other known eukaryotic lactone oxidases and also to some putative prokaryotic lactone oxidases. Analysis of the deduced protein sequence of GLO indicated the presence of a typical secretion signal sequence at the N-terminus of the enzyme. No other targeting/anchoring signals were found, suggesting that GLO is the first known lactone oxidase that is secreted rather than targeted to the membranes of the endoplasmic reticulum or mitochondria. Experimental evidence supports this analysis, as near complete secretion of GLO was observed in two different yeast expression systems. Highest expression levels of GLO were obtained using Pichia pastoris as an expression host. Recombinant GLO was characterised and the suitability of purified GLO for the production of D-EA was studied. Immobilised GLO was found to be rapidly inactivated during D-EA production. The feasibility of in vivo glucose - D-EA conversion using a P. pastoris strain co-expressing the genes of GLO and glucose oxidase (GOD, E.C. 1.1.3.4) of A. niger was demonstrated. The glucose - 5-KGA bioconversion study followed a similar strategy to that used in the D-EA production research. The rationale was based on the use of a cloned gene encoding a membrane-bound pyrroloquinoline quinone (PQQ)-dependent gluconate 5-dehydrogenase (GA 5-DH). GA 5-DH was purified to homogeneity from the only source of this enzyme known in literature, Gluconobacter suboxydans, and partially sequenced. Using the amino acid sequence information, the GA 5-DH gene was cloned from a genomic library of G. suboxydans. The cloned gene was sequenced (GenBank accession no. AJ577472) and found to be an operon of two adjacent genes encoding two subunits of GA 5-DH. It turned out that GA 5-DH is a rather close homologue of a sorbitol dehydrogenase from another G. suboxydans strain. It was also found that GA 5-DH has significant polyol dehydrogenase activity. The G. suboxydans GA 5-DH gene was poorly expressed in E. coli. Under optimised conditions maximum expression levels of GA 5-DH did not exceed the levels found in wild-type G. suboxydans. Attempts to increase expression levels resulted in repression of growth and extensive cell lysis. However, the expression levels were sufficient to demonstrate the possibility of bioconversion of glucose and gluconate into 5-KGA using recombinant strains of E. coli. An uncharacterised homologue of GA 5-DH was identified in Xanthomonas campestris using in silico screening. This enzyme encoded by chromosomal locus NP_636946 was found by a sequencing project of X. campestris and named as a hypothetical glucose dehydrogenase. The gene encoding this uncharacterised enzyme was cloned, expressed in E. coli and found to encode a gluconate/polyol dehydrogenase without glucose dehydrogenase activity. Moreover, the X. campestris GA 5-DH gene was expressed in E. coli at nearly 30 times higher levels than the G. suboxydans GA 5-DH gene. Good expressability of the X. campestris GA-5DH gene makes it a valuable tool not only for 5-KGA production in the tartaric acid (TA) bioprocess, but possibly also for other bioprocesses (e.g. oxidation of sorbitol into L-sorbose). In addition to glucose - 5-KGA bioconversion, a preliminary study of the feasibility of enzymatic conversion of 5-KGA into TA was carried out. Here, the efficacy of the first step of a prospective two-step conversion route including a transketolase and a dehydrogenase was confirmed. It was found that transketolase convert 5-KGA into TA semialdehyde. A candidate for the second step was suggested to be succinic dehydrogenase, but this was not tested. The analysis of the two subprojects indicated that bioconversion of glucose to TA using X. campestris GA 5-DH should be prioritised first and the process development efforts in future should be focused on development of more efficient GA 5-DH production strains by screening a more suitable production host and by protein engineering.

Evaluación del rendimiento agronómico de doce cultivares de repollo (Brassica oleracea L) y la incidencia de Plutella xylostella L, en la Estación experimental Raul González, valle de Sébaco, Matagalpa

El estudio se realizó en la Estación experimental Raúl González del valle de Sébaco de Junio a Septiembre de 1994. Con el objetivo de determinar las características agronómicas de cada cultivar de repollo (Brasica olearacea L), para resolver algunos problemas de pequeños y medianos productores que demandan cultivares con buen rendimiento y resistente a plagas y enfermedades. Se evaluaron las variedades: Gluckstadter Mittelfrüher, Yeshen, Migthy YR, Copenhagen Market, Conquest, Izalco, Fortuna, Grenadier, Discovery, Giant, Superette YR y Glory of Enkhuizen. El diseño utilizado fue de Bloques Completos al Azar (B.C.A) con cuatro repeticiones, evaluándose las variables de crecimiento y desarrollo del cultivo, así como lo relacionado al rendimiento agronómico y la incidencia de Plutella xylostella L. Los datos obtenidos se sometieron al análisis de varianza y a la prueba de Tukey. Las variedades de mejor crecimiento y desarrollo fueron: Yeshen, Migthy YR, Superette YR, Fortuna e Izalco. En las variables de calidad no se obtuvo diferencia significativa., sin embargo, los cultivares Superette YR, Izalco y Fortuna resultaron con el mayor índice de compactación. Respecto al rendimiento los cultivares Grenadier, Izalco y Fortuna obtuvieron el mayor porcentaje de formación de cabezas así como, el mayor peso de cabeza por hectárea. Los insecticidas utilizados para el manejo de P xylostella no lograron reducir sus poblaciones durante las etapas de preformación y llenado de cabezas. Al finalizar el ciclo del cultivo se presentó Xanthomonas campestris p. y campestris resultando tolerantes los cultivares Grenadier, Discovery, Izalco, Migthy YR y Fortuna; perdiendo casi la totalidad de su población las variedades: Glory of Enkhuizen, Copenhagen Market y Conquest.

Evaluación del rendimiento agronómico de seis cultivares de repollo (Brassica oleracea L.) en la Estación Experimental "San José de las Latas", Jinotega

En el presente trabajo se evaluó el rendimiento agronómico de seis cultivares Brassica oleracea L. var. caPitata; Summer Autumn, Mighty YR, Perfect Ball, Mighty, Yessen #-631-4, Yessen # 33-18. El ensayo se estableció en la estacion las " Latas " Ubicada en Jinotega a 1, 400 m.s.n.m. con una precipitación media anual de 2.291 mm, y una temperatura promedio 21.86 ºC. La siembra se realizó en época de primera del año 1990. Empleándose un diseño Bloques al Azar (BCA) Con De los resultados obtenidos, se encontró cultivares que presentaron mayor crecimiento y desarrollo estuvo en primer lugar el cultivar Summer Auttumn, en segundo la linea Yessen # 631-4, y en tercer lugar la linea Yessen # 33-18. Respecto a la calidad del producto comercial, sus variables se mantuvieron estadísticamente sin diferencias significativas a pesar de diferir en cultivares que no presentaron buen desarrollo. El cultivar Summer, menor consistencia, seguida de la línea Yessen # 33-18. Al evaluar el rendimiento, se encontró que el cultivar Summer Autumn y la linea Yessen # 631-4 obtuvieron los mejores promedios. Seguidos por el cultivar Mighty YR y la línea de Yessen # 33-18, aunque Mighty YR presento baja tolerancia a la bacteriosis (Xanthomonas campestris P.).

Comportamiento de dos cultivares clonales de quequisque (Xanthosoma sagittifolium (L.) Schott) en condiciones de Yolaina, Nueva Guinea, postrera 99-00

Con el objetivo de evaluar el comportamiento morfológico, fenológico y de rendimiento, así como la incidencia de enfermedades virales, fungosas y bacterianas, y su efecto sobre los rendimientos de los cultivares Masaya y Nueva Guinea se estableció un ensayo en condiciones y tecnología de productores de Nueva Guinea. El estudio se estableció en un esquema de bloques completos al azar, con cuatro bloques de dos tratamientos cada uno. Se evaluaron las variables morfológicas: altura de planta (cm), número de hojas, área foliar (cm), número de hijos y grosor de tallo. Las variables de rendimiento evaluadas: número de cormelos, peso de cormelos por planta (g), peso promedio por cormelos (g) y Largo por ancho de cormelos (cm2). El ANDEVA a las variables morfológicas demostró que ambos genotipos se comportaron de manera similar, sin embargo, el cultivar Masaya expresó siempre los mejores valores. En los componentes de rendimientos las variables números de cormelos por planta, peso de cormelos por planta y LxA de los cormelos ambos genotipos registraron similares resultados. El clon Masaya expresó los mayores valores en las variables peso de cormelos por planta y dimensión de cormelos, en el caso del variable número de cormelos por planta lo hizo el cv. Nueva Guinea. La variable peso de cormelos mostró diferencias estadísticas significativas a favor del cultivar Masaya 214.43 qq/mz. y 199.72 qq/mz para el cultivar Nueva Guinea. El primer test de ELISA a las muestras de hojas de plantas que presentaban los síntomas confirmó que 100% de las muestras evaluadas presentaron el virus en sus estructuras. Cuatro conteos visuales posteriores indicaron que los valores de plantas que presentaban los síntomas varían en cada fecha de evaluación entre un 9.7 y 30% para el cultivar Nueva Guinea y entre 8.5 y 33.1 % para el cultivar Masaya. No se encontraron diferencias estadísticas significativas en la variable número de cormelos para los tratamientos MyPU (parcela útil), MyEI (efectivamente infectada), NGPU y NGEI. Las variables peso total de cormelos, peso promedio de cormelos por planta y dimensión de cormelo reportaron diferencias estadísticas significativas entre ellos, el cultivar MyEI se fue superior en dichas variables, el cultivar MyPU obtuvo promedios menores pero a la vez superiores a los obtenidos por los cultivares NGEI y NGPU. Las variables de rendimiento dentro de las plantas de la parcela útil (PU) y las plantas efectivamente infectadas (El) de cada cultivar mostraron ligeras diferencias , sin embargo las plantas El presentaron promedios mayores en relación a las plantas PU. Los conteos visuales de los síntomas de la bacteria Xanthomonas campestris registran los mayores valores el genotipo Nueva Guinea con 10% y el genotipo Masaya con 5% de incidencia a los 150 días. El cv. Masaya inicia la brotación de sus yemas con anticipación, en cambio, el ahijamiento fue similar en ambos genotipos. El cultivar Nueva Guinea alcanza el momento de cosecha en un menor período de tiempo, considerando la reducción prematura del área foliar y el número de hojas en relación al cv Masaya, lo mismo que la presencia de raíces y yemas axilares y apicales brotadas en los cormelos al momento de cosecha.

Evaluación de cinco fungicidas para el manejo de enfermedades foliares y su rentabilidad en el cultivo de tomate (Lycopersicom esculentum mill) c.v. butte, Sébaco, Matagalpa, Nicaragua

El presente trabajo se realizó en la Finca Surco Muerto, Municipio de Sébaco–Matagalpa en el período comprendido de Julio a octubre del 2004, con la finalidad de evaluar diferentes productos fungicidas sistémicos (Phyton 0.5 L. ha-1, Benomil 0.5 kg ha-1 y Curzate 2 kg ha-1) y preventivos (Mancozeb 2 kg ha-1 y Clorotalonil 2 L. ha-1) en el manejo de enfermedades foliares en tomate. El diseño establecido fué el de Bloques Completos al Azar (BCA),con siete tratamientos y cuatro repeticiones. Los resultados indican que el efecto de los tratamientos evaluados sobre el control de Alternaria solani enlas primeras fechas no demuestran diferencia estadística, hasta los 62 días después del trasplante (ddt), donde Clorotalonil se comportó como el mejor tratamiento en protección al follaje.Para la variable severidad de Xanthomonas campestris en follaje los resultados indican, que es a partir de los 78 ddt donde los tratamientos demuestran diferencia estadística, comportándose Phyton como el mejor tratamiento para el manejo de dicha enfermedad.El cultivo también fué fuerte mente afectado por Mosca blanca(Bemisia tabaciGenn.) lo que repercutió en porcentajes de severidad de virosis muy altos(92%),enmascarando un mejor efecto que pudieron haber tenido los tratamientos evaluados. Enrelación a las variables de rendimiento analizadas por contrastes ortogonales, para la variable peso de frutos buenos, el análisis no encontró diferencias estadísticas entre los grupos evaluados.Para la variable peso de frutos afectados por Alternaria el análisis detectó diferencias estadísticas entre los grupos evaluados donde el grupo de los Preventivos (Clorotalonil y Mancozeb) ejercieron mejor control para dicho patógeno por haberse obtenido con ellos los más bajos rendimientos afectados con 40.85 kg ha-1. En la variable peso de frutos afectados por Xanthomonas Campestris pvvesicatoria el análisis no encontró diferencias estadísticas entre los grupos comparados.Para el rendimiento real el análisis encontró diferencias estadísticas, donde demuestra que son los tratamientos preventivos (Mancozeb y Clorotalonil) los que ejercieron el mejor control con el más alto rendimiento 5658.56 kg ha-1.Los resultados del análisis económico indican que el tratamiento rentable es Mancozeb, por obtenerse con el una tasa de retorno marginal de 960.25%. En condiciones de bajo rendimiento es Alternado (Curzate + Clorotalonil +Mancozeb) el tratamiento rentable por obtenerse con el una TRM de 246.95%. Al realizar el análisis de sensibilidad los resultados demuestran que la aplicación de Mancozeb es justificable; aun cuando el precio del tomate disminuye en un 70%, de su precio original,ya que con precios bajos se obtiene una TRM de 1.98%.

Identification, expression, and DNA sequence of the GDP-mannose biosynthesis genes encoded by the O7 rfb gene cluster of strain VW187 (Escherichia coli O7:K1)

The O7-specific lipopolysaccharide (LPS) in strains of Escherichia coli consists of a repeating unit made of galactose, mannose, rhamnose, 4-acetamido-2,6-dideoxyglucose, and N-acetylglucosamine. We have recently cloned and characterized genetically the O7-specific LPS biosynthesis region (rfbEcO7) of the E. coli O7:K1 strain VW187 (C. L. Marolda, J. Welsh, L. Dafoe, and M. A. Valvano, J. Bacteriol. 172:3590-3599, 1990). In this study, we localized the gnd gene encoding gluconate-6-phosphate dehydrogenase at one end of the rfbEcO7 gene cluster and sequenced that end of the cluster. Three open reading frames (ORF) encoding polypeptides of 275, 464, and 453 amino acids were identified upstream of gndEcO7, all transcribed toward the gnd gene. ORF275 had 45% similarity at the protein level with ORF16.5, which occupies a similar position in the Salmonella enterica LT2 rfb region, and presumably encodes a nucleotide sugar transferase. The polypeptides encoded by ORFs 464 and 453 were expressed under the control of the ptac promoter and visualized in Coomassie blue-stained sodium dodecyl sulfate-polyacrylamide gels and by maxicell analysis. ORF464 expressed GDP-mannose pyrophosphorylase and ORF453 encoded a phosphomannomutase, the enzymes for the biosynthesis pathway of GDP-mannose, one of the nucleotide sugar precursors for the formation of the O7 repeating unit. They were designated rfbMEcO7 and rfbKEcO7, respectively. The RfbMEcO7 polypeptide was homologous to the corresponding protein in S. enterica LT2, XanB of Xanthomonas campestris, and AlgA of Pseudomonas aeruginosa, all GDP-mannose pyrophosphorylases. RfbKEcO7 was very similar to CpsG of S. enterica LT2, an enzyme presumably involved in the biosynthesis of the capsular polysaccharide colanic acid, but quite different from the corresponding RfbK protein of S. enterica LT2.

CztR, a LysR-Type Transcriptional Regulator Involved in Zinc Homeostasis and Oxidative Stress Defense in Caulobacter crescentus

Caulobacter crescentus is a free-living alphaproteobacterium that has 11 predicted LysR-type transcriptional regulators (LTTRs). Previously, a C. crescentus mutant strain with a mini-Tn5lacZ transposon inserted into a gene encoding an LTTR was isolated; this mutant was sensitive to cadmium. In this work, a mutant strain with a deletion was obtained, and the role of this LTTR (called CztR here) was evaluated. The transcriptional start site of this gene was determined by primer extension analysis, and its promoter was cloned in front of a lacZ reporter gene. beta-Galactosidase activity assays, performed with the wild-type and mutant strains, indicated that this gene is 2-fold induced when cells enter stationary phase and that it is negatively autoregulated. Moreover, this regulator is essential for the expression of the divergent cztA gene at stationary phase, in minimal medium, and in response to zinc depletion. This gene encodes a hypothetical protein containing 10 predicted transmembrane segments, and its expression pattern suggests that it encodes a putative zinc transporter. The cztR strain was also shown to be sensitive to superoxide (generated by paraquat) and to hydrogen peroxide but not to tert-butyl hydroperoxide. The expression of katG and ahpC, but not that of the superoxide dismutase genes, was increased in the cztR mutant. A model is proposed to explain how CztR binding to the divergent regulatory regions could activate cztA expression and repress its own transcription.

Regulation of Catalase-Peroxidase KatG Is OxyR Dependent and Fur Independent in Caulobacter crescentus

Most organisms that grow in the presence of oxygen possess catalases and/or peroxidases, which are necessary for scavenging the H(2)O(2) produced by aerobic metabolism. In this work we investigate the pathways that regulate the Caulobacter crescentus katG gene, encoding the only enzyme with catalase-peroxidase function in this bacterium. The transcriptional start site of the katG gene was determined, showing a short 5` untranslated region. The katG regulatory region was mapped by serial deletions, and the results indicate that there is a single promoter, which is responsible for induction at stationary phase. An oxyR mutant strain was constructed; it showed decreased katG expression, and no KatG protein or catalase-peroxidase activity was detected in stationary-phase cell extracts, implying that OxyR is the main positive regulator of the C. crescentus katG gene. Purified OxyR protein bound to the katG regulatory region between nucleotides -42 and -91 from the transcription start site, as determined by a DNase I footprinting assay, and a canonical OxyR binding site was found in this region. Moreover, OxyR binding was shown to be redox dependent, given that only oxidized proteins bound adjacent to the -35 sequence of the promoter and the katG P1 promoter was activated by OxyR in an H(2)O(2)-dependent manner. On the other hand, this work showed that the iron-responsive regulator Fur does not regulate C. crescentus katG, since a fur mutant strain presented wild-type levels of katG transcription and catalase-peroxidase production and activity, and the purified Fur protein was not able to bind to the katG regulatory region.

The Xanthomonas citri effector protein PthA interacts with citrus proteins involved in nuclear transport, protein folding and ubiquitination associated with DNA repair

P>Xanthomonas axonopodis pv. citri utilizes the type III effector protein PthA to modulate host transcription to promote citrus canker. PthA proteins belong to the AvrBs3/PthA family and carry a domain comprising tandem repeats of 34 amino acids that mediates protein-protein and protein-DNA interactions. We show here that variants of PthAs from a single bacterial strain localize to the nucleus of plant cells and form homo- and heterodimers through the association of their repeat regions. We hypothesize that the PthA variants might also interact with distinct host targets. Here, in addition to the interaction with alpha-importin, known to mediate the nuclear import of AvrBs3, we describe new interactions of PthAs with citrus proteins involved in protein folding and K63-linked ubiquitination. PthAs 2 and 3 preferentially interact with a citrus cyclophilin (Cyp) and with TDX, a tetratricopeptide domain-containing thioredoxin. In addition, PthAs 2 and 3, but not 1 and 4, interact with the ubiquitin-conjugating enzyme complex formed by Ubc13 and ubiquitin-conjugating enzyme variant (Uev), required for K63-linked ubiquitination and DNA repair. We show that Cyp, TDX and Uev interact with each other, and that Cyp and Uev localize to the nucleus of plant cells. Furthermore, the citrus Ubc13 and Uev proteins complement the DNA repair phenotype of the yeast Delta ubc13 and Delta mms2/uev1a mutants, strongly indicating that they are also involved in K63-linked ubiquitination and DNA repair. Notably, PthA 2 affects the growth of yeast cells in the presence of a DNA damage agent, suggesting that it inhibits K63-linked ubiquitination required for DNA repair.

The copper resistance operon copAB from Xanthomonas axonopodis pathovar citri: gene inactivation results in copper sensitivity

Xanthomonas axonopodis pv. citri (Xac) causes citrus canker and the completion of the Xac genome sequence has opened up the possibility of investigating basic cellular mechanisms at the genomic level. Copper compounds have been extensively used in agriculture to control plant diseases. The copA and copB genes, identified by annotation of the Xac genome, encode homologues of proteins involved in copper resistance. A gene expression assay by Northern blotting revealed that copA and copB are expressed as a unique transcript specifically induced by copper. Synthesis of the gene products was also induced by copper, reaching a maximum level at 4 h after addition of copper to the culture medium. CopA was a cytosolic protein and CopB was detected in the cytoplasmic membrane. The gene encoding CopA was disrupted by the insertion of a transposon, leading to mutant strains that were unable to grow in culture medium containing copper, even at the lowest CUSO4 concentration tested (0.25 mM), whereas the wild-type strain was able to grow in the presence of 1 mM copper. Cell suspensions of the wild-type and mutant strains in different copper concentrations were inoculated in lemon leaves to analyse their ability to induce citrus canker symptoms. Cells of mutant strains showed higher sensitivity than the wild-type strain in the presence of copper, i.e. they were not able to induce citrus canker symptoms at high copper concentrations and exhibited a more retarded growth in planta.