Visual detection of turkey coronavirus RNA in tissues and feces by reverse-transcription loop-mediated isothermal amplification (RT-LAMP) with hydroxynaphthol blue dye

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Validation of an immunohistochemistry assay to detect turkey coronavirus: A rapid and simple screening tool for limited resource settings

The objective of the present study was to develop and apply the direct immunohistochemistry (D-IHC) assay to search for turkey coronavirus (TCoV) antigens in formalin-fixed embedded-paraffin tissues by the use of biotin-labeled polyclonal antibody. Twenty-eight-day-old embryonated turkey eggs (n = 50) were inoculated with TCoV-purified virus, and 3 d after inoculation, sections from ileum, ileum-cecal junction, and ceca were harvested, fixed in neutral formalin, and embedded in paraffin blocks and used as positive control. In addition, a total of 100 field samples from ileum, ileum-cecal junction, and ceca, collected from 30 to 45-d-old turkeys poults experiencing an outbreak of acute enteritis, were used to search for TCoV by the same D-IHC. All results were compared with those obtained by conventional RT-PCR and indirect fluorescent antibody assay (IFA) for all tested samples. Turkey coronavirus was detected in experimentally infected embryo tissues and also in field samples in 100% of ileum-cecal junction and ceca by the 3 detection procedures. With IFA as a reference assay, sensitivity and specificity of D-IHC were 98 and 58%, whereas sensitivity and specificity of reverse transcription-PCR were 96 and 66%, calculated from the total of tested samples from experimental infection. Each of the examined procedures was highly specific (D-IHC, 93%; RT-PCR, 90%), sensitive (D-IHC, 85%; RT-PCR, 86%), and agreement of both D-IHC and RT-PCR was 99 and 100%, respectively, compared with IFA results obtained from all the field samples. These findings demonstrated the utility of D-IHC for direct detection of TCoV from field samples and considering the sensitivity and specificity found here, can be used as an alternative technique.

Immunohistochemistry assay to detect Turkey coronavirus (TCoV) from experimentally infected poults

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Hematology of the bronze Turkey (Meleagris gallopavo): Variations with age and gender

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Poult intestinal organ culture for propagation of Turkey coronavirus and assessment of host-virus interactions

Infection of young poults with turkey coronavirus (TCoV) produces a syndrome characterized by acute enteritis, diarrhea, anorexia, ruffled feathers, decreased body weight gain and uneven flock growth. The objective of this study was to standardize an intestinal organ culture (IOC) in order to assess host-virus interaction related to apoptosis. For this purpose the Brazilian strain (TCoV/Brazil/2006 with GenBank accession number FJ188401), was used for infection. Infected IOC cells had mitochondrial dysfunction and initial nuclear activation with MTT value of 90.7 (± 2.4) and apoptotic factor 2.21 (± 2.1), considered statistically different from uninfected IOC cells (p > 0.05). The kinetics of TCoV antigens and viral RNA was directly correlated to annexin-V, caspases- 2 and -3, p53, BCl-2 antigens at 24, 72 and 96 h post-infection (p.i.). Morphological and biochemical features of apoptosis, such as in situ nuclear fragmentation (TUNEL and annexin-V) and DNA ladder formation were also detected in infected cells at all assayed p.i. intervals. Moreover, different from other coronaviruses, the expression of both effective caspase-2 and - 3 and p53 antigens were considered lower. However, at all p.i., the BCl-2 antigens were expressed quantitatively and qualitatively as viral antigen measured by immunofluorescence microscopy analysis. Because the diagnosis of TCoV infection is only performed by infecting embryonated poult eggs, the pathological characteri tics related to host-virus interaction remain unclear. This is the first report on apoptosis of TCoV infected IOC, and reveals that it may be useful immunological method to assess virus pathogenesis.

Pathological and molecular analysis of Turkey coronavirus replication in captive wild Turkey embryos (broad-breasted bronze breeder)

The degree of genetic and pathologic variation exhibited by a turkey Coronavirus (TCoV) strain was investigated after nine serial passages in 25-day-old turkey embryos obtained from wild broad-breasted bronze breeders. In spite of spleen, liver, kidneys, cloacal bursa and thymus have been collected and analysed, the main histopathological changes were only documented in the intestine sections. Microscopic lesions were characterized as mild enteritis, low degree of enterocyte vacuolization and detachment of the intestinal villous after five consecutive passages and were considered absent in the last passages. Genealogic analysis based on S1 and S2 DNA sequences suggested that Brazilian isolate might be considered as originated from TCoV strains circulating in the United States, as 100% identity with TCoV-Gl strain. Although S1 S2 sequences from each passage revealed no significant point mutations, and no correlation could be speculate between S2 nucleotide changes and pathologic features in infected embryos. This is the first demonstration of wild turkey embryos as a model for TCoV isolation and propagation.

Poverty definitions and poverty in Turkey

Includes bibliography

Turkey: country programming background paper: report on transport sector

Includes bibliography

Detecção do TCoV (Turkey Coronavirus) a partir de amostras provenientes de perus (Meleagris gallopavo) com quadro agudo de enterite

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Use of live oocyst vaccine in the control of turkey coccidiosis: Effect on performance and intestinal morphology

An experiment was conducted to determine the effects of different coccidiosis-preventing programs on performance and intestinal morphology of commercial turkeys. Three hundred fifteen1-d-old female commercial cross turkey poults (British United Turkeys, BUT Big 9) were distributed into 3 treatments with 5 replicates of 21 birds each. Three programs were evaluated from 1 to 70 d of age, where program 1 had no anticoccidial drug and no vaccination against coccidiosis; program 2 had an anticoccidial drug (maduramycin 1%, 5 ppm); and program 3 had a vaccination (commercial vaccine, 4 species of Eimeria). All the groups were challenged with a dose of oocysts sporulated (20,000/bird) of 2 species of Eimeria at 21 d of age. In the growing phase (d 0-28), BW, BW gain, and FCR were significantly greater in treated groups compared with control group. In the fattening phase, the performance was not affected by treatments. Treatments and coccidiosis challenge had no significant effects on intestinal villus height. These observations support other reports that confirm live oocyst vaccination can be used effectively as a preventive against avian coccidiosis in commercially reared turkeys.

Isolation and molecular characterization of Brazilian turkey reovirus from immunosuppressed young poults

In this study, we investigated turkey reovirus (TReoV) in tissue samples from young birds, aged 15 days. RT-PCR for TReoV detected 3.3 % positive samples and TReoV was successfully isolated in Vero cells. Histological analysis of positive bursa of Fabricius (BF) revealed atrophied follicles and lymphocyte depletion. The number of CD8+, CD4+ and IgM+ cells was lower in infected BF. Phylogenetic analysis based on S3 gene showed that the Brazilian TReoV isolates clustered in a single group with 98-100 % similarity to TReoV strains circulating in the United States. This is the first indication that TReoV infection may be a contributing factor to immunosuppression in young birds.

Pathology and virus tissue distribution of Turkey Coronavirus (TCoV) in experimentally infected chicks and turkey poults

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Eocene nappe tectonics and late Alpine extension in the Central Anatolide belt, western Turkey

Strukturgeologische Untersuchungen belegen, daß die Anatoliden der Westtürkei im Eozän durch die Plazierung der Kykladischen Blauschiefereinheit entlang einer durchbrechenden Überschiebung auf die Menderes-Decken unter grünschieferfaziellen Metamorphosebedingungen entstanden.Die kykladischen Blauschiefer in der Westtürkei enthalten Relikte eines prograden alpinen Gefüges (DA1), welches hochruckmetamorph von Disthen und Chloritoid poikiloblastisch überwachsen wurde. Dieses Mineralstadium dauerte noch während des Beginns des nachfolgenden Deformationsereignisses (DA2) an, welches durch NE-gerichtete Scherung und Dekompression charakterisiert ist. Die nachfolgende Deformation (DA3) war das erste Ereignis, das beide Einheiten, sowohl die kykladische Blauschifereinheit als auch die Menderes-Decken, gemeinsam erfaßte. Der Überschiebungskontakt zwischen der kykladischen Blauschiefereinheit und den Menderes-Decken ist eine DA3-Scherzone: die ‘Cycladic-Menderes Thrust’ (CMT). Entlang der CMT-Überschiebungsbahn wurden die kykladischen Blauschiefer gegen veschiedene Einheiten der MN plaziert. Die CMT steigt nach S zum strukturell Hangenden hin an und kann daher als eine durchbrechende Überschiebung entlang einer nach S ansteigenden Rampe betrachtet werden. In den kykladischen Blauschiefern überprägen DA3-Strukturen, die im Zusammenhang mit der CMT stehen, hochdruckmentamorphe Gefüge.In den Menderes-Decken, dem Liegenden der CMT, wird DA3 durch regional vebreitete Gefügeelemente dokumentiert, die im Zusammenhang mit S-gerichteten Schersinnindikatoren stehen. DA3-Gefüge haben die Decken intern deformiert und bilden jene Scherzonen, welche die Decken untereinander abgrenzen. In der Çine-Decke können granitische Gesteine in Orthogneise und Metagranite unterteilt werden. Die Deformationsgeschichte dieser Gesteine dokumentiert zwei Ereignisse. Ein frühes amphibolitfazielles Ereignis erfaßte nur die Orthogneise, in denen vorwiegend NE-SW orientierte Lineare und NE-gerichtete Schersinnindikatoren entstanden. Die jüngeren Metagranite wurden sowohl durch vereinzelte DA3-Scherzonen, als auch in einer großmaßstäblichen DA3-Scherzone am Südrand des Çine-Massivs deformiert. In DA3-Scherzonen sind die Lineare N-S orientiert und die zugehörigen Schersinnindikatoren zeigen S-gerichtete Scherung unter grünschieferfaziellen Bedingungen an. Diese grünschieferfaziellen Scherzonen überprägen die amphibolitfaziellen Gefüge in den Orthogneisen. Magmatische Zirkone aus einem Metagranit, der einen Orthogneiss mit Top-NE Gefügen durchschlägt, ergaben ein 207Pb/206Pb-Alter von 547,2±1,0 Ma. Dies deutet darauf hin, daß DPA proterozoischen Alters ist. Dies wird auch durch die Tatsache gestützt, daß triassische Granite in der Çine- und der Bozdag-Decke keine DPA-Gefüge zeigen. Die jüngeren Top-S-Gefüge sind wahrscheinlich zur gleichen Zeit entstanden wie die ältesten Gefüge der Bayindir-Decke.Das Fehlen von Hochdruck-Gefügen im Liegenden der CMT impliziert eine Exhumierung der kykladischen Blauschiefer von mehr ca. 35 km, bevor diese im Eozän auf die Menderes-Decken aufgeschoben wurden. Die substantiellen Unterschiede bezüglich in der tektonometamorphen Geschichte der kykladischen Blauschiefer und der Menderes-Decken widersprechen der Modellvorstellung eines lateral kontinuierlichen Orogengürtels, nach der die Menderes-Decken als östliche Fortsezung der kykladischen Blauschiefer angesehen werden.Die Analyse spröder spätalpiner Deformationsstrukturen und das regionale Muster mit Hilfe von Spaltspurdatierung modellierter Abkühlalter deuten darauf hin, daß die Struktur des Eozänen Deckenstapels durch miozäne bis rezente Kernkomplex-Bildung stark modifiziert wurde. Eine großmaßstäbliche Muldenstruktur im zentralen Teil der Anatoliden hat sich als Folge zweier symmetrisch angeordneter Detachment-Systeme von initial steilen zu heute flachen Orientierungen im Einflußbreich von ’Rolling Hinges’ gebildet. Die Detachment-Störungen begrenzen den ‘Central Menderes metamorphic core complex’ (CMCC). Das Muster der Apatit-Spaltspuralter belegt, daß die Bildung des CMCC im Miozän begann. Durch die Rück-Deformierung von parallel zur Foliation konstruierten Linien gleicher Abkühlalter kann gezeigt werden, daß die Aufwölbung im Liegenden der Detachments zur Entstehung der Muldenstruktur führte. Das hohe topographische Relief im Bereich des CMCC ist eine Folge der Detachment-Störungen, was darauf hindeutet daß der obere Mantel in den Prozeß mit einbezogen gewesen ist.

Thermochronologic and geodynamic evolution of the Pontides: Sakarya terrane (Karakaya Complex) and Istanbul terrane, Turkey.

An integrated array of analytical methods -including clay mineralogy, vitrinite reflectance, Raman spectroscopy on carbonaceous material, and apatite fission-track analysis- was employed to constrain the thermal and thermochronological evolution of selected portions of the Pontides of northern Turkey. (1) A multimethod investigation was applied for the first time to characterise the thermal history of the Karakaya Complex, a Permo-Triassic subduction-accretion complex cropping out throughout the Sakarya Zone. The results indicate two different thermal regimes: the Lower Karakaya Complex (Nilüfer Unit) -mostly made of metabasite and marble- suffered peak temperatures of 300-500°C (greenschist facies); the Upper Karakaya Complex (Hodul and the Orhanlar Units) –mostly made of greywacke and arkose- yielded heterogeneous peak temperatures (125-376°C), possibly the result of different degree of involvement of the units in the complex dynamic processes of the accretionary wedge. Contrary to common belief, the results of this study indicate that the entire Karakaya Complex suffered metamorphic conditions. Moreover, a good degree of correlation among the results of these methods demonstrate that Raman spectroscopy on carbonaceous material can be applied successfully to temperature ranges of 200-330°C, thus extending the application of this method from higher grade metamorphic contexts to lower grade metamorphic conditions. (2) Apatite fission-track analysis was applied to the Sakarya and the İstanbul Zones in order to constrain the exhumation history and timing of amalgamation of these two exotic terranes. AFT ages from the İstanbul and Sakarya terranes recorded three distinct episodes of exhumation related to the complex tectonic evolution of the Pontides. (i) Paleocene - early Eocene ages (62.3-50.3 Ma) reflect the closure of the İzmir-Ankara ocean and the ensuing collision between the Sakarya terrane and the Anatolide-Tauride Block. (ii) Late Eocene - earliest Oligocene (43.5-32.3 Ma) ages reflect renewed tectonic activity along the İzmir-Ankara. (iii) Late Oligocene- Early Miocene ages reflect the onset and development of the northern Aegean extension. The consistency of AFT ages, both north and south of the tectonic contact between the İstanbul and Sakarya terranes, suggest that such terranes were amalgamated in pre-Cenozoic times. (3) Fission-track analysis was also applied to rock samples from the Marmara region, in an attempt to constrain the inception and development of the North Anatolian Fault system in the region. The results agree with those from the central Pontides. The youngest AFT ages (Late Oligocene - early Miocene) were recorded in the western portion of the Marmara Sea region and reflect the onset and development of northern Aegean extension. Fission-track data from the eastern Marmara Sea region indicate rapid Early Eocene exhumation induced by the development of the İzmir-Ankara orogenic wedge. Thermochronological data along the trace of the Ganos Fault –a segment of the North Anatolian Fault system- indicate the presence of a tectonic discontinuity active by Late Oligocene time, i.e. well before the arrival of the North Anatolian Fault system in the area. The integration of thermochronologic data with preexisting structural data point to the existence of a system of major E-W-trending structural discontinuities active at least from the Late Oligocene. In the Early Pliocene, inception of the present-day North Anatolian Fault system in the Marmara region occurred by reactivation of these older tectonic structures.