Computational microscopy: turning megapixels into gigapixels

The layout of a typical optical microscope has remained effectively unchanged over the past century. Besides the widespread adoption of digital focal plane arrays, relatively few innovations have helped improve standard imaging with bright-field microscopes. This thesis presents a new microscope imaging method, termed Fourier ptychography, which uses an LED to provide variable sample illumination and post-processing algorithms to recover useful sample information. Examples include increasing the resolution of megapixel-scale images to one gigapixel, measuring quantitative phase, achieving oil-immersion quality resolution without an immersion medium, and recovering complex three dimensional sample structure.

Single mode Er-doped pi-phase-shifted distributed feedback fibre grating laser

A novel method incorporating the shielded method and the post-processing method has been proposed to fabricate the pi-phase-shilted fibre grating. Then an Er-doped pi-phase-shifted distributed feedback fibre grating laser has been fabricated using the grating. The laser threshold is 20 mW. When pumped with 90 mW light at 980 nm, the laser gives an output of 1.1 mW. Its signal-to-noise ratio is better than 60 dB. It is demonstrated that the laser is single mode operation by means of a Fabry-Perot scanning interferometer.

75 mW robust single frequency Yb-doped DFB fiber Bragg grating laser

Incorporating the shielded method and post-processing method, a 75 mW single frequency Yb-doped DFB fiber laser was obtained with a 250 mW laser diode pump source at 978 nm. The threshold of the laser is 2 mW. The laser is single-polarization operation and the output power fluctuation is less than 0.2 mW in one hour when the pump power is 250 mW.

后处理对离子交换磷酸盐玻璃平面光波导的影响

研究了退火和二次离子交换对Er^3＋／Yb^3＋共掺的磷酸盐玻璃平面光波导传输特性的影响。在退火过程中，由于热效应和波导层Ag^＋离子的浓度差使得Ag^＋离子重新分布；随着退火时间的延长和温度的升高，光波导模式数目逐渐增加，波导层深度加深，且波导表面折射率与玻璃基质折射率差减小，退火扩散深度与退火时间的平方根成正比。电子探针结果显示在二次离子交换后形成了掩埋式的光波导，Ag^＋离子浓度接近二次方分布，而掩埋式的光波导有助于降低光波导的传输损耗。

LiAlO2衬底上ZnO薄膜的溶胶-凝胶法制备和表征

采用溶胶凝胶法在LiAlO2（302）衬底上制备了ZnO薄膜。用X射线衍射（XRD）和扫描电镜（SEM）对样品的结构和形貌进行了表征。XRD结果表明,随着热处理温度的升高（350℃、450℃、550℃、600℃、800℃）,所得到的薄膜分别为单相ZnAl2O4（350℃）,ZnAl2O4和ZnO的混合相（450℃）以及单相的ZnO（550℃、600℃、800℃）,并且ZnO薄膜C轴择优取向的生长趋势随温度升高相应明显。SEM图像显示,随着热处理温度的升高,ZnO薄膜的粒径相应变大。

Utilização de modelos de classificação para mineração de dados relacionados à aprendizagem de matemática e ao perfil de professores do ensino fundamental

No presente trabalho foram utilizados modelos de classificação para minerar dados relacionados à aprendizagem de Matemática e ao perfil de professores do ensino fundamental. Mais especificamente, foram abordados os fatores referentes aos educadores do Estado do Rio de Janeiro que influenciam positivamente e negativamente no desempenho dos alunos do 9 ano do ensino básico nas provas de Matemática. Os dados utilizados para extrair estas informações são disponibilizados pelo Instituto Nacional de Estudos e Pesquisas Educacionais Anísio Teixeira que avalia o sistema educacional brasileiro em diversos níveis e modalidades de ensino, incluindo a Educação Básica, cuja avaliação, que foi foco deste estudo, é realizada pela Prova Brasil. A partir desta base, foi aplicado o processo de Descoberta de Conhecimento em Bancos de Dados (KDD - Knowledge Discovery in Databases), composto das etapas de preparação, mineração e pós-processamento dos dados. Os padrões foram extraídos dos modelos de classificação gerados pelas técnicas árvore de decisão, indução de regras e classificadores Bayesianos, cujos algoritmos estão implementados no software Weka (Waikato Environment for Knowledge Analysis). Além disso, foram aplicados métodos de grupos e uma metodologia para tornar as classes uniformemente distribuídas, afim de melhorar a precisão dos modelos obtidos. Os resultados apresentaram importantes fatores que contribuem para o ensino-aprendizagem de Matemática, assim como evidenciaram aspectos que comprometem negativamente o desempenho dos discentes. Por fim, os resultados extraídos fornecem ao educador e elaborador de políticas públicas fatores para uma análise que os auxiliem em posteriores tomadas de decisão.

Implementação paralela de um código de elementos finitos em 2D para as Equações de Navier-Stokes para fluidos incompressíveis com transporte de escalares.

O estudo do fluxo de água e do transporte escalar em reservatórios hidrelétricos é importante para a determinação da qualidade da água durante as fases iniciais do enchimento e durante a vida útil do reservatório. Neste contexto, um código de elementos finitos paralelo 2D foi implementado para resolver as equações de Navier-Stokes para fluido incompressível acopladas a transporte escalar, utilizando o modelo de programação de troca de mensagens, a fim de realizar simulações em um ambiente de cluster de computadores. A discretização espacial é baseada no elemento MINI, que satisfaz as condições de Babuska-Brezzi (BB), que permite uma formulação mista estável. Todas as estruturas de dados distribuídos necessárias nas diferentes fases do código, como pré-processamento, solução e pós-processamento, foram implementadas usando a biblioteca PETSc. Os sistemas lineares resultantes foram resolvidos usando o método da projeção discreto com fatoração LU por blocos. Para aumentar o desempenho paralelo na solução dos sistemas lineares, foi empregado o método de condensação estática para resolver a velocidade intermediária nos vértices e no centróide do elemento MINI separadamente. Os resultados de desempenho do método de condensação estática com a abordagem da solução do sistema completo foram comparados. Os testes mostraram que o método de condensação estática apresenta melhor desempenho para grandes problemas, às custas de maior uso de memória. O desempenho de outras partes do código também são apresentados.

Mineração de dados para previsão de eventos extremos de precipitação

No presente trabalho foram desenvolvidos modelos de classificação aplicados à mineração de dados climáticos para a previsão de eventos extremos de precipitação com uma hora de antecedência. Mais especificamente, foram utilizados dados observacionais registrados pela estação meteorológica de superfície localizada no Instituto Politécnico da Universidade do Estado do Rio de Janeiro em Nova Friburgo RJ, durante o período de 2008 a 2012. A partir desses dados foi aplicado o processo de Descoberta de Conhecimento em Banco de Dados (KDD Knowledge Discovery in Databases), composto das etapas de preparação, mineração e pós processamento dos dados. Com base no uso de algoritmos de Redes Neurais Artificiais e Árvores de Decisão para a extração de padrões que indicassem um acúmulo de precipitação maior que 10 mm na hora posterior à medição das variáveis climáticas, pôde-se notar que a utilização da observação meteorológica de micro escala para previsões de curto prazo é suscetível a altas taxas de alarmes falsos (falsos positivos). Para contornar este problema, foram utilizados dados históricos de previsões realizadas pelo Modelo Eta com resolução de 15 km, disponibilizados pelo Centro de Previsão de Tempo e Estudos Climáticos do Instituto Nacional de Pesquisas Espaciais CPTEC/INPE. De posse desses dados, foi possível calcular os índices de instabilidade relacionados à formação de situação convectiva severa na região de Nova Friburgo e então armazená-los de maneira estruturada em um banco de dados, realizando a união entre os registros de micro e meso escala. Os resultados demonstraram que a união entre as bases de dados foi de extrema importância para a redução dos índices de falsos positivos, sendo essa uma importante contribuição aos estudos meteorológicos realizados em estações meteorológicas de superfície. Por fim, o modelo com maior precisão foi utilizado para o desenvolvimento de um sistema de alertas em tempo real, que verifica, para a região estudada, a possibilidade de chuva maior que 10 mm na próxima hora.

Absorption of sound in cellular foams

To further enhance the sound absorption of metal foams via combining the high sound absorption and good heat conductivity of the cellular foam metals, the use and acoustic modeling of these materials are reviewed. The predictions made by three viscous models developed by the authors for the propagation of sound through open-cell metal foams are compared with an experiment both for the metal foams and for the polymer substrates used to manufacture the foam. All models are valid in the limit of low Reynold's number which is valid for the typical cell dimensions found in metal foams provided the amplitude of the waves is below 160 dB. The first model considers the drag experienced by acoustic waves as they propagate passing rigid cylinders parallel to their axes, the second considers the propagation normal to their axes, and the third considers the propagation passing the spherical joints. All three are combined together to give a general model of the acoustic behavior of the foams. In particular, the sound absorption is found to be significant and well predicted by the combined model. In addition, a post-processing technique is described for the experiment used to extract the fundamental wave propagation characteristics of the material.

Identification of support conditions of buried pipes using a vibrating pig

This paper describes a method for monitoring the variation in support condition of pipelines using a vibration technique. The method is useful for detecting poor support of buried pipelines and for detecting spanning and depth of cover in sub-sea lines. Variation in the pipe support condition leads to increased likelihood of pipe damage. Under roadways, poorly supported pipe may be damaged by vehicle loading. At sea, spanned sections of pipe are vulnerable to ocean current loading and also to snagging by stray anchors in shallow waters. A vibrating `pig' has been developed and tested on buried pipelines. Certain features of pipe support, such as voids and hard spots, display characteristic responses to vibration, and these are measured by the vibrating pig. Post-processing of the measured vibration data is used to produce a graphical representation of the pipeline support and certain `feature characteristics' are identified. In field tests on a pipeline with deliberately constructed support faults, features detected by the vibrating pig are in good agreement with the known construction.

Exploiting variable-width features in large vocabulary speech recognition

The use of variable-width features (prosodics, broad structural information etc.) in large vocabulary speech recognition systems is discussed. Although the value of this sort of information has been recognized in the past, previous approaches have not been widely used in speech systems because either they have not been robust enough for realistic, large vocabulary tasks or they have been limited to certain recognizer architectures. A framework for the use of variable-width features is presented which employs the N-Best algorithm with the features being applied in a post-processing phase. The framework is flexible and widely applicable, giving greater scope for exploitation of the features than previous approaches. Large vocabulary speech recognition experiments using TIMIT show that the application of variable-width features has potential benefits.

Viscous layer meshes from level sets on cartesian meshes

The long term goal of our work is to enable rapid prototyping design optimization to take place on geometries of arbitrary size in a spirit of a real time computer game. In recent papers we have reported the integration of a Level Set based geometry kernel with an octree-based cut-Cartesian mesh generator, RANS flow solver and post-processing all within a single piece of software - and all implemented in parallel with commodity PC clusters as the target. This work has shown that it is possible to eliminate all serial bottlenecks from the CED Process. This paper reports further progress towards our goal; in particular we report on the generation of viscous layer meshes to bridge the body to the flow across the cut-cells. The Level Set formulation, which underpins the geometry representation, is used as a natural mechanism to allow rapid construction of conformal layer meshes. The guiding principle is to construct the mesh which most closely approximates the body but remains solvable. This apparently novel approach is described and examples given.

Towards topology-free optimization - An application to turbine internal cooling geometries

The application of automated design optimization to real-world, complex geometry problems is a significant challenge - especially if the topology is not known a priori like in turbine internal cooling. The long term goal of our work is to focus on an end-to-end integration of the whole CFD Process, from solid model through meshing, solving and post-processing to enable this type of design optimization to become viable & practical. In recent papers we have reported the integration of a Level Set based geometry kernel with an octree-based cut- Cartesian mesh generator, RANS flow solver, post-processing & geometry editing all within a single piece of software - and all implemented in parallel with commodity PC clusters as the target. The cut-cells which characterize the approach are eliminated by exporting a body-conformal mesh guided by the underpinning Level Set. This paper extends this work still further with a simple scoping study showing how the basic functionality can be scripted & automated and then used as the basis for automated optimization of a generic gas turbine cooling geometry. Copyright © 2008 by W.N.Dawes.

A practical demonstration of scalable, parallel mesh generation

Cambridge Flow Solutions Ltd, Compass House, Vision Park, Cambridge, CB4 9AD, UK Real-world simulation challenges are getting bigger: virtual aero-engines with multistage blade rows coupled with their secondary air systems & with fully featured geometry; environmental flows at meta-scales over resolved cities; synthetic battlefields. It is clear that the future of simulation is scalable, end-to-end parallelism. To address these challenges we have reported in a sequence of papers a series of inherently parallel building blocks based on the integration of a Level Set based geometry kernel with an octree-based cut-Cartesian mesh generator, RANS flow solver, post-processing and geometry management & editing. The cut-cells which characterize the approach are eliminated by exporting a body-conformal mesh driven by the underpinning Level Set and managed by mesh quality optimization algorithms; this permits third party flow solvers to be deployed. This paper continues this sequence by reporting & demonstrating two main novelties: variable depth volume mesh refinement enabling variable surface mesh refinement and a radical rework of the mesh generation into a bottom-up system based on Space Filling Curves. Also reported are the associated extensions to body-conformal mesh export. Everything is implemented in a scalable, parallel manner. As a practical demonstration, meshes of guaranteed quality are generated for a fully resolved, generic aircraft carrier geometry, a cooled disc brake assembly and a B747 in landing configuration. Copyright © 2009 by W.N.Dawes.

Acceleration of an unstructured hybrid mesh RANS solver by porting to GPU architectures

The modern CFD process consists of mesh generation, flow solving and post-processing integrated into an automated workflow. During the last several years we have developed and published research aimed at producing a meshing and geometry editing system, implemented in an end-to-end parallel, scalable manner and capable of automatic handling of large scale, real world applications. The particular focus of this paper is the associated unstructured mesh RANS flow solver and the porting of it to GPU architectures. After briefly describing the solver itself, the special issues associated with porting codes using unstructured data structures are discussed - followed by some application examples. Copyright © 2011 by W.N. Dawes.