Characterization of new IS elements and studies of their dispersion in two subspecies of Leifsonia xyli

Background: Leifsonia xyli is a xylem-inhabiting bacterial species comprised of two subspecies: L. xyli subsp. xyli (Lxx) and L. xyli subsp. cynodontis (Lxc). Lxx is the causal agent of ratoon stunting disease in sugarcane commercial fields and Lxc colonizes the xylem of several grasses causing either mild or no symptoms of disease. The completely sequenced genome of Lxx provided insights into its biology and pathogenicity. Since IS elements are largely reported as an important source of bacterial genome diversification and nothing is known about their role in chromosome architecture of L. xyli, a comparative analysis of Lxc and Lxx elements was performed. Results: Sample sequencing of Lxc genome and comparative analysis with Lxx complete DNA sequence revealed a variable number of IS transposable elements acting upon genomic diversity. A detailed characterization of Lxc IS elements and a comparative review with IS elements of Lxx are presented. Each genome showed a unique set of elements although related to same IS families when considering features such as similarity among transposases, inverted and direct repeats, and element size. Most of the Lxc and Lxx IS families assigned were reported to maintain transposition at low levels using translation regulatory mechanisms, consistent with our in silico analysis. Some of the IS elements were found associated with rearrangements and specific regions of each genome. Differences were also found in the effect of IS elements upon insertion, although none of the elements were preferentially associated with gene disruption. A survey of transposases among genomes of Actinobacteria showed no correlation between phylogenetic relatedness and distribution of IS families. By using Southern hybridization, we suggested that diversification of Lxc isolates is also mediated by insertion sequences in probably recent events. Conclusion: Collectively our data indicate that transposable elements are involved in genome diversification of Lxc and Lxx. The IS elements were probably acquired after the divergence of the two subspecies and are associated with genome organization and gene contents. In addition to enhancing understanding of IS element dynamics in general, these data will contribute to our ongoing comparative analyses aimed at understanding the biological differences of the Lxc and Lxx.

A new genus for seven Brazilian land planarian species, split off from Notogynaphallia (Platyhelminthes, Tricladida)

Special attention is given to cephalic structures of a species complex within the Notogynaphallia ( Platyhelminthes, Tricladida). Notogynaphallia muelleri is redescribed. The species possesses a cephalic musculo-glandular organ. Its glandular and muscular organization are similar to that previously observed in N. caissara and N. fita and to that herein described for N. abundans, N. ceciliae, N. ernesti, and N. graffi. Based on these unique cephalic specializations, a new genus is proposed for these seven species. Functionally, the musculo-glandular organ may be an adaptation for capturing and holding prey.

Microbial processes and bacterial populations associated to anaerobic treatment of sulfate-rich wastewater

A pilot-scale (1.2 m(3)) anaerobic sequencing batch biofilm reactor (ASBBR) containing mineral coal for biomass attachment was fed with sulfate-rich wastewater at increasing sulfate concentrations. Ethanol was used as the main organic source. Tested COD/sulfate ratios were of 1.8 and 1.5 for sulfate loading rates of 0.65-1.90 kgSO(4)(2-)/cycle (48 h-cycle) or of 1.0 in the trial with 3.0 gSO(4)(2-) l(-1). Sulfate removal efficiencies observed in all trials were as high as 99%. Molecular inventories indicated a shift on the microbial composition and a decrease on species diversity with the increase of sulfate concentration. Beta-proteobacteria species affiliated with Aminomonas spp. and Thermanaerovibrio spp. predominated at 1.0 gSO(4)(2-) l(-1). At higher sulfate concentrations the predominant bacterial group was Delta-proteobacteria mainly Desulfovibrio spp. and Desulfomicrobium spp. at 2.0 gSO(4)(2-) l(-1), whereas Desulfurella spp. and Coprothermobacter spp. predominated at 3.0 gSO(4)(2-) l(-1). These organisms have been commonly associated with sulfate reduction producing acetate, sulfide and sulfur. Methanogenic archaea(Methanosaeta spp.)was found at 1.0 and 2.0 gSO(4)(2-) l(-1). Additionally, a simplified mathematical model was used to infer on metabolic pathways of the biomass involved in sulfate reduction. (C) 2009 Elsevier Ltd. All rights reserved.

Treatment of linear alkylbenzene sulfonate in a horizontal anaerobic immobilized biomass reactor

Linear alkylbenzene sulfonate (LAS) is an anionic surfactant widely used to manufacture detergents and found in domestic and industrial wastewater. LAS removal was evaluated in a horizontal anaerobic immobilized biomass reactor. The system was filled with polyurethane foam and inoculated with sludge that was withdrawn from an up flow anaerobic sludge blanket reactor that is used to treat swine wastewater. The reactor was fed with easily degradable substrates and a solution of commercial LAS for 313 days. The hydraulic retention time applied was 12 h. The system was initially operated without detergent and resulted to 94% reduction of demand. The mass balance in the system indicated that the LAS removal efficiency was 45% after 180 days. From the 109th day to the 254th day, a removal efficiency of 32% was observed. The removal of LAS was approximately 40% when 1500 mg of LAS were applied in the absence of co-substrates suggesting that the LAS molecules were used selectively. Microscopic analyses of the biofilm revealed diverse microbial morphologies and denaturing gradient gel electrophoresis profiling showed variations in the total bacteria and sulfate-reducing bacteria populations. 16S rRNA sequencing and phylogenetic analyses demonstrated that members of the order Clostridiales were the major components of the bacterial community in the last step of the reactor operation. (c) 2009 Elsevier Ltd. All rights reserved.

Performance and molecular evaluation of an anaerobic system with suspended biomass for treating wastewater with high fat content after enzymatic hydrolysis

The effect of a lipase-rich fungal enzymatic preparation, produced by a Penicillium sp. during solid-state fermentation, was evaluated in an anaerobic digester treating dairy wastewater with 1200 mg of oil and grease/L The oil and grease hydrolysis step was carried out with 0.1% (w/v) of solid enzymatic preparation at 30 degrees C for 24 h, and resulted in a final free acid concentration eight times higher than the initial value. The digester operated in sequential batches of 48 h at 30 degrees C for 245 days, and had high chemical oxygen demand (COD) removal efficiencies (around 90%) when fed with pre-hydrolyzed wastewater. However, when the pre-hydrolysis step was removed, the anaerobic digester performed poorly (with an average COD removal of 32%), as the oil and grease accumulated in the biomass and effluent oil and grease concentration increased throughout the operational period. PCR-DGGE analysis of the Bacteria and Archaea domains revealed remarkable differences in the microbial profiles in trials conducted with and without the pre-hydrolysis step, indicating that differences observed in overall parameters were intrinsically related to the microbial diversity of the anaerobic sludge. (C) 2009 Elsevier Ltd. All rights reserved.

Reassessment of the phylogenetic position of Caulobacter subvibrioides

Determination of the 16S rRNA gene sequence of Caulobacter subvibrioides ATCC 15264(T) (T = type strain) confirmed that this species is a member of the alpha subclass of the Proteobacteria and showed that it is phylogenetically most closely related to the Caulobacter group comprising the species Caulobacter bacteroides, Caulobacter crescentus, and Brevandimonas (Pseudomonas) diminuta, for which 16S rRNA sequences of the type strains are currently available. The closest known relative of strain ATCC 15264(T) among these species is B. diminuta (level of direct pairwise sequence similarity, 95%). On the basis of its previously determined 16S rRNA sequence (accession number M83797), C. subvibrioides is most closely related to Sphingomonas adhaesiva in the alpha-4 subgroup (level of similarity, 97.7%). Analysis of the hydroxy fatty acids of C. subvibrioides ATCC 15264(T) showed that the 2-hydroxymyristic acid which is characteristic of the genus Sphingomonas was absent.

A new genus of viviparous gyrodactylid (Monogenea) from the Great Barrier Reef, Australia with descriptions of seven new species

Acanthoplacatus gen. nov., a new genus of viviparous gyrodactylid, is described from the rns and skin of siganid fishes from the Great Barrier Reef, Australia. The genus is characterized by a muscular, tube-like haptor with 16 marginal hooks on the posterior margin. The ventral lobe of the haptor is located anteriorly relative to the dorsal lobe and contains a pair of hamuli and a ventral bar with posteriorly-projecting ventral bar membrane. A dorsal bar is absent. Five pairs of posterior gland cells surround the posterior terminations of the gut. The male copulatory organ is a muscular, non-eversible bulb with several spines around the distal opening. Species of Acanthoplacatus have a bilateral excretory system consisting of six pairs of flame cells and a pair of excretory bladders. Seven new species are described: Acanthoplacatus adlardi sp. nov. and A. amplihamus sp. nov. from Siganus punctatus (Forster, 1801), A. brauni sp. nov. from S. corallinus (Valenciennes, 1835), A. parvihamus sp. nov. from S. vulpinus (Schlegel and Mueller, 1845), A. puelli sp. nov. from S. puellus Schlegel, 1852, A. shieldsi sp. nov. from S. lineatus (Valenciennes, 1835) and A. sigani sp. nov. from S. fuscescens (Houttuyn, 1782). Species can be discriminated by shape and size of the hamuli, marginal hooks and ventral bar and by male copulatory organ sclerite morphology. Three species (A. brauni sp. nov., A. shieldsi sp. nov. and A. sigani sp. nov.) were assessed for seasonal variation of sclerite size. Ten of thirteen morphological characters showed seasonal variation in size for at least one of the species. The characters were longer in winter except dorsal root tissue cap width. Only one character, marginal hook length, showed significant seasonal variation for all three species. Species of Acanthoplacatus were observed to attach using only the marginal hooks and the role of hamuli in attachment is unclear. The dorsal rn of the host is the preferred site for most species but the anal fin, caudal fin and body surfaces are preferred by some species. Prevalences for species range from 57 to 100%.

A review of Australian Neoseiulus Hughes and Typhlodromips de Leon (Acari : Phytoseiidae : Amblyseiinae)

The Australian Neoseiulus Hughes and Typhlodromips de Leon (Acari: Phytoseiidae: Amblyseiinae) are revised and diagnosed, and three new related genera, Knopkirie, gen. nov., Olpiseius, gen. nov. and Pholaseius, gen. nov. are proposed and diagnosed. In Australia, Neoseiulus contains at least 44 species, 18 of which are newly described here, in six species-groups: the barkeri-group, womersleyi-group, cucumeris-group, cangaro-group, paloratus-group, and the paspalivorus-group. Typhlodromips contains six species, two previously described and four new species. Knopkirie contains four species, three of which are newly described here, in two species-groups: the petri-group and the banksiae-group. Olpiseius contains three species, one of which is newly described, all placed in the noncollyerae-group, and Pholaseius is monotypic, with one newly described species. Diagnoses and keys are provided for all Australian species in each of the above genera, as are keys to the amblyseiine genera currently recognised in Australia.

The family Trypetheliaceae (Loculoascomycetes: lichenized Melanommatales) in Amazonian Brazil.

The family Trypetheliaceae is redefined including a key to the genera. Exiliseptum gen. nov. is described. Keys to the species are provided for the six genera which occur in Amazonian Brazil along with brief comments on the three other genera. Thirty-five species are included, tem new species described and ten new combinations proposed.

Simuliidae (Diptera:Culicomorpha) no Brasil XI - Shelleyellum gênero novo

É caracterizado um novo gênero neotropical de simulídeo, com base nas espécies previamente incluídas no "Grupo Siolii", do gênero Psaroniocompsa. Chaves de identificação para imaturos são apresentadas. O gênero Shelleyellum fica constituído pelas espécies: S. damascenoi (Py-Daniel,1988), S. guaporense (Py-Daniel, 1989), S. lourencoi (Py-Daniel, 1988), S. siolli (Py-Daniel, 1988), S. tergospinosum (Hamada, 2000). O gênero é caracterizado, principalmente, pela de carena longitudinal nos distímeros dos machos e a presença de tubérculos tegumentares nas larvas.

Novos táxons de Disteniidae (Coleoptera) neotropicais

New taxa described: Cometessoledari (Bolivia, Beni), Paracometesamabilis (Costa Rica), P. pojuca (Brasil, Pará) and Aiurasyma gen. nov., type-species, A. potira sp. nov. (Colombia).

Novos táxons e notas sobre Cerambycidae (Coleoptera) neotropicais

New taxa described, Cerambycinae: Ibidionini, Cecaibidion gen. nov., type species, C. bivittatus sp. nov. from Panama; Acangassuini trib. nov., Acangassu gen. nov., type species, A. diminuta sp. nov. from Brazil (Rio de Janeiro); Necydalopsini: Eucharassusflavotibiale sp. nov. from Colombia (Valle) and E. confusus sp. nov. from Venezuela (Distrito Federal). Lamiinae: Onciderini, Iaquira gen. nov., type species, I.viridis sp. nov. from Brazil (Espírito Santo); Phacellini, Phacellusplurimaculatus sp. nov. from Brazil (Amazonas). Notes on Phacellusfulguratus Monné, 1979 and a key to the species of Eucharassus are added.

Notas e descrições em Parandrini (Coleoptera, Cerambycidae, Parandrinae)

The genus Parandra is reviewed and four genera are recognized: Parandra Latreille, 1804, Neandra Lameere, 1912, stat. nov., Archandra Lameere, 1912, stat. nov. and Acutandra gen. nov. The genus Parandra is subdivided in two subgenera: Parandra (Parandra) s. str. and Parandra (Birandra) subgen. nov. The geographical distribution of P. (P.) laevis Latreille, 1804 is commented and the probable synonymy between P. cubaecola Chevrolat, 1862 and P. (P.) cribrata Thomson, 1861 is discussed. New species described: P. (P.) tavakiliani from Puerto Rico and P. (Birandra) mariahelenae from Jamaica. New combinations: Neandra brunnea (Fabricius, 1798), Neandra marginicollis (Schaeffer, 1929), Archandra caspia (Ménétriès, 1832), Acutandra punctatissima (Thomson, 1861), A. degeeri (Thomson, 1867), A. murrayi (Lameere, 1912), A. araucana (Bosq, 1951), A. ubitiara (Santos-Silva & Martins, 2000), all from Parandra. Keys to genera of Parandrini, subgenera of Parandra and American species of Parandra and Acutandra are added.

Novos táxons neotropicais de Desmiphorini (Coleoptera, Cerambycidae, Lamiinae)

New species described from Brazil: Curuapira tuberosa (Espírito Santo); Stereomerus maculatus (Bahia); Gyrpanetes oryba (Espírito Santo); Desmiphora (D.) santossilvai (Pará); Desmiphora (D.) uniformis (Bahia). Icublabia gen. nov., type-species, I. multispinosa sp. nov. from Ecuador (Napo) are described. Curuapira exotica Martins & Galileo, 1998, originally described from Venezuela, is recorded from Brazil (Amazonas, Rondônia and Mato Grosso).

Um novo gênero e espécie de Baetidae (Ephemeroptera) do Estado de Minas Gerais Sudeste do Brasil

Iguaira gen. nov., type species, I. poranga, sp. nov., based on one nymph from the State of Minas Gerais, Brazil, are proposed. The new taxon is distinguished by the labrum with multiple, unorganized setae dorsally; hypopharynx with three-lobed lingua; cleft mandibular incisors; labium with internally curved paraglossae; labial palps with second segment with strong, apically rounded distomedial process and third segment with truncate medial and apical margins; elongate tarsal claws with minute denticles; and absence of scales and scale bases.