Characterization of soil chemical properties of strawberry fields using principal component analysis

One of the largest strawberry-producing municipalities of Rio Grande do Sul (RS) is Turuçu, in the South of the State. The strawberry production system adopted by farmers is similar to that used in other regions in Brazil and in the world. The main difference is related to the soil management, which can change the soil chemical properties during the strawberry cycle. This study had the objective of assessing the spatial and temporal distribution of soil fertility parameters using principal component analysis (PCA). Soil sampling was based on topography, dividing the field in three thirds: upper, middle and lower. From each of these thirds, five soil samples were randomly collected in the 0-0.20 m layer, to form a composite sample for each third. Four samples were taken during the strawberry cycle and the following properties were determined: soil organic matter (OM), soil total nitrogen (N), available phosphorus (P) and potassium (K), exchangeable calcium (Ca) and magnesium (Mg), soil pH (pH), cation exchange capacity (CEC) at pH 7.0, soil base (V%) and soil aluminum saturation(m%). No spatial variation was observed for any of the studied soil fertility parameters in the strawberry fields and temporal variation was only detected for available K. Phosphorus and K contents were always high or very high from the beginning of the strawberry cycle, while pH values ranged from very low to very high. Principal component analysis allowed the clustering of all strawberry fields based on variables related to soil acidity and organic matter content.

Herança da estatura de planta e do comprimento da panícula principal no cruzamento entre Avena Sativa L. e Avena Sterilis L.

A espécie selvagem Avena sterilis L. tem sido amplamente utilizada para cruzamento com aveia cultivada, pela alta afinidade existente entre ambas, o que possibilita um aumento na variabilidade genética e transferência de genes de importância agronômica. Entretanto, caracteres indesejáveis, como a alta estatura e um maior comprimento de panícula, podem ser transferidos à progênie. Nesse sentido, com o objetivo de avaliar a variabilidade genética, bem como a herança em cruzamentos entre Avena sativa L. e Avena sterilis L., foram mensurados os caracteres estatura de planta e comprimento da panícula principal. As variâncias fenotípicas e genéticas foram altas e as variâncias de ambiente foram baixas, proporcionando uma alta herdabilidade no sentido amplo. O efeito gênico de aditividade foi o mais importante para explicar a variação genética em ambos os caracteres.

Retaining principal components for discrete variables

The present study discusses retention criteria for principal components analysis (PCA) applied to Likert scale items typical in psychological questionnaires. The main aim is to recommend applied researchers to restrain from relying only on the eigenvalue-than-one criterion; alternative procedures are suggested for adjusting for sampling error. An additional objective is to add evidence on the consequences of applying this rule when PCA is used with discrete variables. The experimental conditions were studied by means of Monte Carlo sampling including several sample sizes, different number of variables and answer alternatives, and four non-normal distributions. The results suggest that even when all the items and thus the underlying dimensions are independent, eigenvalues greater than one are frequent and they can explain up to 80% of the variance in data, meeting the empirical criterion. The consequences of using Kaiser"s rule are illustrated with a clinical psychology example. The size of the eigenvalues resulted to be a function of the sample size and the number of variables, which is also the case for parallel analysis as previous research shows. To enhance the application of alternative criteria, an R package was developed for deciding the number of principal components to retain by means of confidence intervals constructed about the eigenvalues corresponding to lack of relationship between discrete variables.

Crescimento da cultura principal e da soca de genótipos de arroz irrigado por inundação

Com o objetivo de identificar e avaliar as características fisiológicas que se correlacionam com o rendimento de grãos da cultura principal e da soca para estabelecer critérios de seleção de genótipos de arroz irrigado por inundação com maior capacidade produtiva de grãos, foi conduzido um experimento em solo Gley Pouco Húmico. O delineamento experimental usado foi o de blocos balanceados em grupos, com quatro repetições, onde os grupos consistiram nos ciclos e, as parcelas, dos genótipos em cada ciclo. Na soca, os genótipos de ciclo médio apresentaram maiores valores de matéria seca total da parte aérea e de folha que os de ciclo curto e, na cultura principal, além desses parâmetros, foram superiores na matéria seca de raiz, densidade radicular, índice e duração de área foliar. Os valores de razão de área foliar, área foliar específica e razão de peso de folha da cultura principal foram mais elevados aos 20 dias após a emergência das plântulas e declinaram ao longo do ciclo. Foram realizadas correlações entre as variáveis estudadas e entre estas e o rendimento de grãos da cultura principal e da soca. Os índices fisiológicos da cultura principal correlacionaram-se com o rendimento de grãos, não apresentando, contudo, correlação significativa com o rendimento de grãos da soca.

Manejo de água no comportamento da cultura principal e da soca de arroz irrigado

O cultivo da soca de arroz (Oryza sativa L.) pode se constituir em uma fonte de renda importante se o manejo da água de irrigação for adequado. O objetivo deste estudo foi determinar os efeitos de períodos de drenagem e de irrigação, antes e depois, respectivamente, da colheita da cultura principal sobre o comportamento da cultura principal e da soca de arroz. Os tratamentos consistiram da combinação de quatro períodos de drenagem (corte da irrigação e abertura dos drenos aos 0, 10, 20 e 30 dias) antes da colheita da cultura principal, com o reinício da irrigação aos 0, 10, 20 e 30 dias após a colheita da cultura principal, em arranjo fatorial 4x4, no delineamento experimental de blocos ao acaso, com quatro repetições. Os períodos de irrigação após a colheita afetaram diferentemente o comportamento da soca de arroz de acordo com as condições climáticas. Com temperaturas do ar mais baixas, o atraso no reinício da irrigação reduziu a produtividade e a qualidade do produto colhido. Em condições climáticas de temperaturas do ar mais altas, a inundação iniciada nove dias após a colheita da cultura principal resultou em melhor desempenho da soca, com uma economia de água de 14% em relação à inundação imediatamente após a colheita. A soca aparentemente não se apresenta favorável ao desenvolvimento de populações daninhas de larvas da bicheira-da-raiz do arroz, Oryzophagus oryzae.

Diagnosing Patients Combining Principal Components Analysis and Case Based Reasoning

This paper addresses the application of a PCA analysis on categorical data prior to diagnose a patients data set using a Case-Based Reasoning (CBR) system. The particularity is that the standard PCA techniques are designed to deal with numerical attributes, but our medical data set contains many categorical data and alternative methods as RS-PCA are required. Thus, we propose to hybridize RS-PCA (Regular Simplex PCA) and a simple CBR. Results show how the hybrid system produces similar results when diagnosing a medical data set, that the ones obtained when using the original attributes. These results are quite promising since they allow to diagnose with less computation effort and memory storage

ERK1/2 controls Na,K-ATPase activity and transepithelial sodium transport in the principal cell of the cortical collecting duct of the mouse kidney.

The collecting duct of normal kidney exhibits significant activity of the MEK1/2-ERK1/2 pathway as shown in vivo by immunostaining of phosphorylated active ERK1/2 (pERK1/2). The MEK1/2-ERK1/2 pathway controls many different ion transports both in proximal and distal nephron, raising the question of whether this pathway is involved in the basal and/or hormone-dependent transepithelial sodium reabsorption in the principal cell of the cortical collecting duct (CCD), a process mediated by the apical epithelial sodium channel and the basolateral sodium pump (Na,K-ATPase). To answer this question we used ex vivo microdissected CCDs from normal mouse kidney or in vitro cultured mpkCCDcl4 principal cells. Significant basal levels of pERK1/2 were observed ex vivo and in vitro. Aldosterone and vasopressin, known to up-regulate sodium reabsorption in CCDs, did not change ERK1/2 activity either ex vivo or in vitro. Basal and aldosterone- or vasopressin-stimulated sodium transport was down-regulated by the MEK1/2 inhibitor PD98059, in parallel with a decrease in pERK1/2 in vitro. The activity of Na,K-ATPase but not that of epithelial sodium channel was inhibited by MEK1/2 inhibitors in both unstimulated and aldosterone- or vasopressin-stimulated CCDs in vitro. Cell surface biotinylation showed that intrinsic activity rather than cell surface expression of Na,K-ATPase was controlled by pERK1/2. PD98059 also significantly inhibited the activity of Na,K-ATPase ex vivo. Our data demonstrate that the ERK1/2 pathway controls Na,K-ATPase activity and transepithelial sodium transport in the principal cell and indicate that basal constitutive activity of the ERK1/2 pathway is a critical component of this control.

Debating the centre : the theory of principal qualificand (mukhyavisesya) in classical Indian philosophy

The theory of language has occupied a special place in the history of Indian thought. Indian philosophers give particular attention to the analysis of the cognition obtained from language, known under the generic name of śābdabodha. This term is used to denote, among other things, the cognition episode of the hearer, the content of which is described in the form of a paraphrase of a sentence represented as a hierarchical structure. Philosophers submit the meaning of the component items of a sentence and their relationship to a thorough examination, and represent the content of the resulting cognition as a paraphrase centred on a meaning element, that is taken as principal qualificand (mukhyaviśesya) which is qualified by the other meaning elements. This analysis is the object of continuous debate over a period of more than a thousand years between the philosophers of the schools of Mimāmsā, Nyāya (mainly in its Navya form) and Vyākarana. While these philosophers are in complete agreement on the idea that the cognition of sentence meaning has a hierarchical structure and share the concept of a single principal qualificand (qualified by other meaning elements), they strongly disagree on the question which meaning element has this role and by which morphological item it is expressed. This disagreement is the central point of their debate and gives rise to competing versions of this theory. The Mïmāmsakas argue that the principal qualificand is what they call bhāvanā ̒bringing into being̒, ̒efficient force̒ or ̒productive operation̒, expressed by the verbal affix, and distinct from the specific procedures signified by the verbal root; the Naiyāyikas generally take it to be the meaning of the word with the first case ending, while the Vaiyākaranas take it to be the operation expressed by the verbal root. All the participants rely on the Pāninian grammar, insofar as the Mimāmsakas and Naiyāyikas do not compose a new grammar of Sanskrit, but use different interpretive strategies in order to justify their views, that are often in overt contradiction with the interpretation of the Pāninian rules accepted by the Vaiyākaranas. In each of the three positions, weakness in one area is compensated by strength in another, and the cumulative force of the total argumentation shows that no position can be declared as correct or overall superior to the others. This book is an attempt to understand this debate, and to show that, to make full sense of the irreconcilable positions of the three schools, one must go beyond linguistic factors and consider the very beginnings of each school's concern with the issue under scrutiny. The texts, and particularly the late texts of each school present very complex versions of the theory, yet the key to understanding why these positions remain irreconcilable seems to lie elsewhere, this in spite of extensive argumentation involving a great deal of linguistic and logical technicalities. Historically, this theory arises in Mimāmsā (with Sabara and Kumārila), then in Nyāya (with Udayana), in a doctrinal and theological context, as a byproduct of the debate over Vedic authority. The Navya-Vaiyākaranas enter this debate last (with Bhattoji Dïksita and Kaunda Bhatta), with the declared aim of refuting the arguments of the Mïmāmsakas and Naiyāyikas by bringing to light the shortcomings in their understanding of Pāninian grammar. The central argument has focused on the capacity of the initial contexts, with the network of issues to which the principal qualificand theory is connected, to render intelligible the presuppositions and aims behind the complex linguistic justification of the classical and late stages of this debate. Reading the debate in this light not only reveals the rationality and internal coherence of each position beyond the linguistic arguments, but makes it possible to understand why the thinkers of the three schools have continued to hold on to three mutually exclusive positions. They are defending not only their version of the principal qualificand theory, but (though not openly acknowledged) the entire network of arguments, linguistic and/or extra-linguistic, to which this theory is connected, as well as the presuppositions and aims underlying these arguments.

Perfilhamento como característica mitigadora dos prejuízos ocasionados ao milho pela desfolha do colmo principal

O objetivo deste trabalho foi verificar se os perfilhos podem mitigar os prejuízos ocasionados pela desfolha do colmo principal em milho. Os experimentos foram implantados em Lages, SC, em 20/10/2006 e 31/10/2008. O delineamento experimental utilizado foi o de blocos ao acaso, com parcelas subdivididas. Na parcela principal, foram testados dois destinos dos perfilhos: manutenção até a colheita e remoção quando o colmo principal apresentava nove folhas expandidas (V9). Nas subparcelas, avaliaram-se quatro épocas de desfolha do colmo principal: V9, V15 (quinze folhas expandidas), VT (pendoamento) e folhas preservadas até a colheita. Avaliou-se o híbrido P30F53, à densidade de 55 mil plantas por hectare. Determinaram-se: a produtividade total, a do colmo principal e a dos perfilhos. As desfolhas realizadas em V15 e VT diminuíram a produtividade, em comparação ao tratamento sem desfolha, independentemente do destino dos perfilhos. Quando o milho foi desfolhado em V15 e VT, a produtividade total das parcelas em que os perfilhos foram mantidos foi maior do que daquelas em que eles foram removidos. Isto indica que os perfilhos foram benéficos ao colmo principal do milho, quando houve restrições à produção de carboidrato oriundas da perda de área foliar próximo do florescimento.

Fuzzy Principal Components Analysis

Due to the large number of characteristics, there is a need to extract the most relevant characteristicsfrom the input data, so that the amount of information lost in this way is minimal, and the classification realized with the projected data set is relevant with respect to the original data. In order to achieve this feature extraction, different statistical techniques, as well as the principal components analysis (PCA) may be used. This thesis describes an extension of principal components analysis (PCA) allowing the extraction ofa finite number of relevant features from high-dimensional fuzzy data and noisy data. PCA finds linear combinations of the original measurement variables that describe the significant variation in the data. The comparisonof the two proposed methods was produced by using postoperative patient data. Experiment results demonstrate the ability of using the proposed two methods in complex data. Fuzzy PCA was used in the classificationproblem. The classification was applied by using the similarity classifier algorithm where total similarity measures weights are optimized with differential evolution algorithm. This thesis presents the comparison of the classification results based on the obtained data from the fuzzy PCA.

Principal components analysis for quality evaluation of cooled banana 'Nanicão' in different packing

This work aims determinate the evaluation of the quality of 'Nanicão' banana, submitted to two conditions of storage temperature and three different kinds of package, using the technique of the Analysis of Principal Components (ACP), as a basis for an Analysis of Variance. The fruits used were 'Nanicão' bananas, at ripening degree 3, that is, more green than yellow. The packages tested were: "Torito" wood boxes, load capacity: 18 kg; "½ box" wood boxes, load capacity: 13 kg; and cardboard boxes, load capacity: 18 kg. The temperatures assessed were: room temperature (control); and (13±1ºC), with humidity controlled to 90±2,5%. Fruits were discarded when a sensory analysis determined they had become unfit for consumption. Peel coloration, percentages of imperfection, fresh mass, total acidity, pH, total soluble solids and percentages of sucrose were assessed. A completely randomized design with a 2-factorial treatment structure (packing X temperature) was used. The obtained data were analyzed through a multivariate analysis known as Principal Components Analysis, using S-plus 4.2. The conclusion was that the best packages to preserve the fruit were the ½ box ones, which proves that it is necessary to reduce the number of fruits per package to allow better ventilation and decreases mechanical injuries and ensure quality for more time.