Solubility of red 153 and blue 1 in supercritical carbon dioxide

Solubilities of red 153, (3-[[4-[[5,6(or 6,7)-dichloro-2-benzothiazolyl]azo]phenyl]ethylamino]propanenitrile), an azo compound, and disperse blue1 (1,4,5,8-tetraaminoantraquinone) in supercritical carbon dioxide (SC CO(2)) were measured at T = (333.2 to 393.2) K over the pressure range (12.0 to 40.0) MPa by a flow type apparatus. The solubility of red 153 (0.985. 10(-6) to 37.2. 10(-6)) in the overall region of measurements is found to be significantly higher than that of disperse blue 1 (1.12.10(-7) to 4.89.10(-7)). The solubility behavior of disperse red 153 follows the general solubility trend displayed by disperse dyes with a crossover pressure at about 20 MPa. On the other hand, blue 1, which is a disperse anthraquinone dye, exhibits unexpected behavior not recorded previously there is no crossover pressure at the temperature and pressure ranges studied, and the dye's solubility at T = 333.2 K practically does not increase with pressure. To the best of our knowledge, there are no previous measurements of blue 1 solubility in SC CO(2) reported in the literature. The experimental data were correlated by using the Soave Redlich Kwong equation of state (EoS) with the one-fluid van der Waals mixing rule, and an acceptable correlation of the solubility data for both dyes was obtained.

Viscosity and self-diffusion coefficients of dialkyl adipates: a correlation scheme with predictive capabilities

A correlation and predictive scheme for the viscosity and self-diffusivity of liquid dialkyl adipates is presented. The scheme is based on the kinetic theory for dense hard-sphere fluids, applied to the van der Waals model of a liquid to predict the transport properties. A "universal" curve for a dimensionless viscosity of dialkyl adipates was obtained using recently published experimental viscosity and density data of compressed liquid dimethyl (DMA), dipropyl (DPA), and dibutyl (DBA) adipates. The experimental data are described by the correlation scheme with a root-mean-square deviation of +/- 0.34 %. The parameters describing the temperature dependence of the characteristic volume, V-0, and the roughness parameter, R-eta, for each adipate are well correlated with one single molecular parameter. Recently published experimental self-diffusion coefficients of the same set of liquid dialkyl adipates at atmospheric pressure were correlated using the characteristic volumes obtained from the viscosity data. The roughness factors, R-D, are well correlated with the same single molecular parameter found for viscosity. The root-mean-square deviation of the data from the correlation is less than 1.07 %. Tests are presented in order to assess the capability of the correlation scheme to estimate the viscosity of compressed liquid diethyl adipate (DEA) in a range of temperatures and pressures by comparison with literature data and of its self-diffusivity at atmospheric pressure in a range of temperatures. It is noteworthy that no data for DEA were used to build the correlation scheme. The deviations encountered between predicted and experimental data for the viscosity and self-diffusivity do not exceed 2.0 % and 2.2 %, respectively, which are commensurate with the estimated experimental measurement uncertainty, in both cases.

Periplasmic nitrate reductase revisited: a sulfur atom completes the sixth coordination of the catalytic molybdenum

J Biol Inorg Chem. 2008 Jun;13(5):737-53. doi: 10.1007/s00775-008-0359-6

Preparação de suspensões aquosas de nanopartículas de carbono para deposição em superfícies

Dissertação de mestrado integrado em Engenharia de Materiais

Química láser: Transferencia de energía

El propósito general de este proyecto es el de desarrollar investigaciones experimentales y teóricas en la dinámica de las reacciones químicas, de importancia en los procesos atmosféricos (baja temperatura) y de combustión (alta temperatura), con especial énfasis en los aspectos relativos a la relajación colisional de la energía, en especies simples y en moléculas de van der Waals. Con este propósito se estudiarán las reacciones físicas y químicas de especies excitadas, en tiempo real, en función del grado de excitación y de la presión y naturaleza de los gases desactivantes. En particular, se tratará de correlacionar la cantidad de energía transferida por colisión con parámetros moleculares, basándose en la dinámica de estos procesos. Los objetivos parciales pueden clasificarse de la siguiente manera: 1) Cálculos teóricos de la relajación colisional de moléculas diatómicas excitadas vibracionalmente, con gases colisionantes mono y diatómicos. 2) Cálculos teóricos de la relajación colisional de moléculas poliatómicas, excitadas vibracionalmente, con gases monoatómicos, en función del grado de excitación rotacional. 3) Cálculos teóricos de la relajación colisional de moléculas de van der Waals, excitadas vibracionalmente, con gases monoatómicos. 4) Generación de radicales libres del tip CFxCly, con x+y=3, por descomposición multifotónica IR de precursores adecuados y estudio de sus reacciones con diversos sustratos. Por ejemplo, se estudiará la reacción de radicales CF3 con NO2. 5) Estudio de la relajación colisional de moléculas excitadas vibracionalmente por mediciones de la intensidad de fluorescencia IR, resuelta en el tiempo. 6) Instalación y puesta en funcionamiento de un aparato de haces moleculares. 7) Generación y estudio de los procesos de relajación y reactividades de moléculas de van der Waals.

Química láser: Transferencia de energía

El propósito general de este proyecto es el de desarrollar investigaciones experimentales y teóricas en la dinámica de las reacciones químicas, de importancia en los procesos atmosféricos (baja temperatura) y de combustión (alta temperatura), con especial énfasis en los aspectos relativos a la relajación colisional de la energía, en especies simples y en moléculas de van der Waals. Con este propósito se estudiarán las reacciones físicas y químicas de especies excitadas, en tiempo real, en función del grado de excitación y de la presión y naturaleza de los gases desactivantes. En particular, se tratará de correlacionar la cantidad de energía transferida por colisión con parámetros moleculares, basándose en la dinámica de estos procesos. Los objetivos parciales pueden clasificarse de la siguiente manera: 1) Cálculos teóricos de la relajación colisional de moléculas diatómicas excitadas vibracionalmente, con gases colisionantes mono y diatómicos. 2) Cálculos teóricos de la relajación colisional de moléculas poliatómicas, excitadas vibracionalmente, con gases monoatómicos, en función del grado de excitación rotacional. 3) Cálculos teóricos de la relajación colisional de moléculas de van der Waals, excitadas vibracionalmente, con gases monoatómicos. 4) Generación de radicales libres del tip CFxCly, con x+y=3, por descomposición multifotónica IR de precursores adecuados y estudio de sus reacciones con diversos sustratos. Por ejemplo, se estudiará la reacción de radicales CF3 con NO2. 5) Estudio de la relajación colisional de moléculas excitadas vibracionalmente por mediciones de la intensidad de fluorescencia IR, resuelta en el tiempo. 6) Instalación y puesta en funcionamiento de un aparato de haces moleculares. 7) Generación y estudio de los procesos de relajación y reactividades de moléculas de van der Waals.

Dinámica y cinética de los procesos físicos y químicos del radical OH con compuestos orgánicos volátiles (COVs) de relevancia atmosférica. Dynamics and kinetics of the physical and chemical processes of OH radicals with atmospheric relevant volatile organic compounds (VOCs)

El objetivo del presente proyecto es estudiar los procesos físicos y químicos del radical OH con compuestos orgánicos volátiles (COVs), con los cuales sea factible la formación de agregados de van der Waals (vdW) responsables de la curvatura en los gráficos de Arrhenius, empleando técnicas modernas, complementarias entre si y novedosas en el país. El problema será abordado desde tres perspectivas complementarias: 1) estudios cinéticos, 2) estudios mecanísticos y de distribución de productos y 3) estudios de la dinámica de los procesos físicos y químicos. La finalidad es alcanzar una mejor comprensión de los mecanismos que intervienen en el comportamiento químico de especies presentes en la atmósfera y obtener datos cinéticos de alta calidad que puedan alimentar modelos computacionales capaces de describir la composición de la atmósfera, presente y futura. Los objetivos son estudiar: 1) mediante fotólisis láser pulsada con detección por fluorescencia inducida por láser (PLP-LIF), en reactores de flujo, la cinética de reacción del radical OH(v”=0) con COVs que presentan gráficos de Arrhenius curvos con energías de activación negativas, tales como alcoholes insaturados, alquenos halogenados, éteres halogenados, ésteres alifáticos; 2) en una cámara de simulación de condiciones atmosféricas de gran volumen (4500 L), la identidad y el rendimiento de productos de las reacciones mencionadas, a fines de evaluar su impacto atmosférico y dilucidar los mecanismos de reacción; 3) mediante haces moleculares y espectroscopía láser, la estructura y reactividad de complejos de vdW entre alcoholes insaturados o aromáticos (cresoles) y el radical OH, como modelo de los aductos propuestos como responsables de la desviación al comportamiento de Arrhenius de las reacciones mencionadas; 4) mediante PLP-LIF y expansiones supersónicas, las constantes específicas estado a estado (ksts) de relajación/reacción del radical OH(v”=1-4) vibracionalmente excitado con los COVs mencionados. Los resultados experimentales obtenidos serán contrastados con cálculos ab-initio de estructura electrónica, los cuales apoyarán las interpretaciones, permitirán proponer estructuras de estados de transición y aductos colisionales, como así también calcular las frecuencias de vibración de los complejos de vdW para su posterior asignación en los espectros LIF y REMPI. Asimismo, los mecanismos de reacción propuestos y los parámetros cinéticos medidos experimentalmente serán comparados con aquellos obtenidos por cálculos teóricos. The aim of this project is to study the physical and chemical processes of OH radicals with volatile organic compounds (VOCs) with which the formation of van der Waals (vdW) clusters, responsible for the observed curvature in the Arrhenius plots, might be feasible. The problem will be addressed as follow : 1) kinetic studies; 2) products distribution and mechanistic studies and 3) dynamical studies of the physical and chemical processes. The purpose is to obtain a better understanding of the mechanisms that govern the chemical behavior of species present in the atmosphere and to obtain high quality kinetic data to be used as input to computational models. We will study: 1) the reaction kinetics of OH (v”=0) radicals with VOCs such as unsaturated alcohols, halogenated alkenes, halogenated ethers, aliphatic esters, which show curved Arrhenius plots and negative activation energies, by PLP-LIF, in flow systems; 2) in a large volume (4500 L) atmospheric simulation chamber, reaction products yields in order to evaluate their atmospheric impact and reaction mechanisms; 3) using molecular beams and laser spectroscopy, the structure and reactivity of the vdW complexes formed between the unsaturated or aromatic alcohols and the OH radicals as a model of the adducts proposed as responsible for the non-Arrhenius behavior; 4) the specific state-to-state relaxation/reaction rate constants (ksts) of the vibrationally excited OH (v”=1-4) radical with the VOCs by PLP-LIF and supersonic expansions. Ab-initio calculations will be carried out to support the interpretation of the experimental results, to obtain the transition state and collisional adducts structures, as well as to calculate the vibrational frequencies of the vdW complexes to assign to the LIF and REMPI spectra. Also, the proposed reaction mechanisms and the experimentally measured kinetic parameters will be compared with those obtained from theoretical calculations.

The effect of counterpoise correction and relaxation energy term to the internal rotation barriers: application to the BF3 ...NH3 and C2H4 ...SO2 dimers

The relevance of the fragment relaxation energy term and the effect of the basis set superposition error on the geometry of the BF3⋯NH3 and C2H4⋯SO2 van der Waals dimers have been analyzed. Second-order Møller-Plesset perturbation theory calculations with the d95(d,p) basis set have been used to calculate the counterpoise-corrected barrier height for the internal rotations. These barriers have been obtained by relocating the stationary points on the counterpoise-corrected potential energy surface of the processes involved. The fragment relaxation energy can have a large influence on both the intermolecular parameters and barrier height. The counterpoise correction has proved to be important for these systems

Um instrumento para medida de potencial matricial nos solos sem ocorrência de cavitação

A tensão nos solos tem sido vista pelos cientistas do solo como um aspecto de importância crescente sendo bastante usada como informação relevante na agricultura desde o início do século passado. Seu conhecimento permite melhores intervenções antrópicas não só em aspectos relativos à vegetação e a agricultura, mas também no que concerne à estabilidade de um talude. Para medir a tensão no solo tensiometros cada vez mais sofisticados tem sido desenvolvidos. É apresentado neste trabalho o estado da arte da evolução dos tensiômetros, além do desenvolvimento de um deles, o qual mede valores de tensão de até pelo menos 1.500 kPa. Diversos protótipos foram preparados. Observou-se que se comportam diferentemente de acordo com as características de seus componentes, sem grande influência nos resultados nos domínios de leitura possíveis em cada caso. Assim, os efeitos de tipo de transdutor, tamanho do reservatório de água, dimensões e permeabilidade ao ar da pedra porosa foram analisados, monitorando-os quando instalados em lisímetros, junto com outros equipamentos, como equitensiômetros e TDRs. Os resultados mostraram que o protótipo pode ser usado in situ e em laboratório, sendo facilmente adaptável para uso em oedômetro ou aparelho de ensaio triaxial. Comentários sobre o papel das forças atrativas de Van der Waals na cavitação do sistema são também apresentados, esclarecendo-se os procedimentos para deslocamento do ponto de cavitação para limites superiores com a diminuição dos possíveis núcleos de gás no sistema.

Liquid-liquid phase transition for soft-core attractive potential

Using event-driven molecular dynamics simulations, we study a three-dimensional one-component system of spherical particles interacting via a discontinuous potential combining a repulsive square soft core and an attractive square well. In the case of a narrow attractive well, it has been shown that this potential has two metastable gas-liquid critical points. Here we systematically investigate how the changes of the parameters of this potential affect the phase diagram of the system. We find a broad range of potential parameters for which the system has both a gas-liquid critical point C1 and a liquid-liquid critical point C2. For the liquid-gas critical point we find that the derivatives of the critical temperature and pressure, with respect to the parameters of the potential, have the same signs: they are positive for increasing width of the attractive well and negative for increasing width and repulsive energy of the soft core. This result resembles the behavior of the liquid-gas critical point for standard liquids. In contrast, for the liquid-liquid critical point the critical pressure decreases as the critical temperature increases. As a consequence, the liquid-liquid critical point exists at positive pressures only in a finite range of parameters. We present a modified van der Waals equation which qualitatively reproduces the behavior of both critical points within some range of parameters, and gives us insight on the mechanisms ruling the dependence of the two critical points on the potential¿s parameters. The soft-core potential studied here resembles model potentials used for colloids, proteins, and potentials that have been related to liquid metals, raising an interesting possibility that a liquid-liquid phase transition may be present in some systems where it has not yet been observed.

Origin of the spectral shifts among the early intermediates of the rhodopsin photocycle.

A combined strategy based on the computation of absorption energies, using the ZINDO/S semiempirical method, for a statistically relevant number of thermally sampled configurations extracted from QM/MM trajectories is used to establish a one-to-one correspondence between the structures of the different early intermediates (dark, batho, BSI, lumi) involved in the initial steps of the rhodopsin photoactivation mechanism and their optical spectra. A systematic analysis of the results based on a correlation-based feature selection algorithm shows that the origin of the color shifts among these intermediates can be mainly ascribed to alterations in intrinsic properties of the chromophore structure, which are tuned by several residues located in the protein binding pocket. In addition to the expected electrostatic and dipolar effects caused by the charged residues (Glu113, Glu181) and to strong hydrogen bonding with Glu113, other interactions such as π-stacking with Ala117 and Thr118 backbone atoms, van der Waals contacts with Gly114 and Ala292, and CH/π weak interactions with Tyr268, Ala117, Thr118, and Ser186 side chains are found to make non-negligible contributions to the modulation of the color tuning among the different rhodopsin photointermediates.

Intercalação Eletroquímica de Cátions Hexilamínio na Matriz Lamelar 1T-TiS2

The electrochemical synthesis of a ternary compound obtained by the intercalation of hydrated hexilaminium cations into the layered compound 1T-TiS2 is reported. Two different compounds were detected by cyclovoltammetry and studied by X-ray diffractometry. Models showing the steric arrangement of the hydrated hexilaminium cations into the Van der Waals gaps were proposed.

Estudio estructural del MoO3 y sus planos cristalinos

In the present work we present geometric models of the most studied MoO3 surfaces, which were obtained using the DTMM 2.0 Molecular Modeller software. MoO3 has an orthorhombic layered structure, with each layer comprised of two interleaved planes of MoO6 octahedral. These layers are parallel to the (010) crystal plane and only oxygen ions are exposed on their surfaces. This situation results in weak van der Waals bonding between layers and in a relatively inert surface. In our approach to surface geometric structure we consider "ideal" crystal surface, in which the bulk atomic arrangement is maintained. These surfaces were generated by imaginary cleavage along appropriate planes in the bulk crystal structure.

Aplicação de modelo matemático às propriedades reológicas de géis mistos de agarose e de goma guar

Certain biopolymers are capable of forming physically cross-linked gels in aqueous medium, stabilized by forces such as Coulombic, charge transfer, hydrogen bonding, dipole-dipole, van der Waals, and hydrophobic interactions. The mathematical description of these physical networks are difficult, but should contribute to a better understanding of the gelling process. The Clark and Ross-Murphy model was applied to experimental data for agarose-guar gum mixed systems, in which only agarose is the gelling polysaccharide. A computational routine based on the statistical maximum likehood principle was employed to estimate the f, K and a characteristic parameters. Statistical t-test and F-test were used to analyse the set of parameters.

Estructura cristalina del N-isopropil-2-ciano-3(5'-nitrofuril)acrilamida

C11H11N3O4 , Mr = 249.23, triclinic, , a = 5.453(1), b = 22.873(5), c = 4.893(1) Å, a = 94.47(3), b = 96.36(3), g = 86.27(3)º, V = 603.7(8)ų,Z = 2, Dx = 1.371 Mg/m-3,l(Cu Ka1) = 1.54178Å, m = 0.86mm-1, room temperature. The crystal structure of N-isopropyl-2-cyano-3(5'-nitrofuryl) - acrylamide has been determined by Direct Methods and refined to R = 0.086 for 797 observed reflections. The molecules in the crystal are packed at normal van der Waals forces and by an hydrogen bond between N1-H1...02i (N1...02i: 2.910(1)Å), with i=x,y,z+1).