Crystal structure of a DEAD box protein from the hyperthermophile Methanococcus jannaschii

We have determined the structure of a DEAD box putative RNA helicase from the hyperthermophile Methanococcus jannaschii. Like other helicases, the protein contains two α/β domains, each with a recA-like topology. Unlike other helicases, the protein exists as a dimer in the crystal. Through an interaction that resembles the dimer interface of insulin, the amino-terminal domain's 7-strand β-sheet is extended to 14 strands across the two molecules. Motifs conserved in the DEAD box family cluster in the cleft between domains, and many of their functions can be deduced by mutational data and by comparison with other helicase structures. Several lines of evidence suggest that motif III Ser-Ala-Thr may be involved in binding RNA.

Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome

Pseudogenes are non-functioning copies of genes in genomic DNA, which may either result from reverse transcription from an mRNA transcript (processed pseudogenes) or from gene duplication and subsequent disablement (non-processed pseudogenes). As pseudogenes are apparently ‘dead’, they usually have a variety of obvious disablements (e.g., insertions, deletions, frameshifts and truncations) relative to their functioning homologs. We have derived an initial estimate of the size, distribution and characteristics of the pseudogene population in the Caenorhabditis elegans genome, performing a survey in ‘molecular archaeology’. Corresponding to the 18 576 annotated proteins in the worm (i.e., in Wormpep18), we have found an estimated total of 2168 pseudogenes, about one for every eight genes. Few of these appear to be processed. Details of our pseudogene assignments are available from http://bioinfo.mbb.yale.edu/genome/worm/pseudogene. The population of pseudogenes differs significantly from that of genes in a number of respects: (i) pseudogenes are distributed unevenly across the genome relative to genes, with a disproportionate number on chromosome IV; (ii) the density of pseudogenes is higher on the arms of the chromosomes; (iii) the amino acid composition of pseudogenes is midway between that of genes and (translations of) random intergenic DNA, with enrichment of Phe, Ile, Leu and Lys, and depletion of Asp, Ala, Glu and Gly relative to the worm proteome; and (iv) the most common protein folds and families differ somewhat between genes and pseudogenes—whereas the most common fold found in the worm proteome is the immunoglobulin fold and the most common ‘pseudofold’ is the C-type lectin. In addition, the size of a gene family bears little overall relationship to the size of its corresponding pseudogene complement, indicating a highly dynamic genome. There are in fact a number of families associated with large populations of pseudogenes. For example, one family of seven-transmembrane receptors (represented by gene B0334.7) has one pseudogene for every four genes, and another uncharacterized family (represented by gene B0403.1) is approximately two-thirds pseudogenic. Furthermore, over a hundred apparent pseudogenic fragments do not have any obvious homologs in the worm.

(Table1) Living and dead benthic foraminifera abundance in sediments of the Bottsand-Lagoon, Western Baltic Sea

Seasonal collections were made from 3 stations in a brackish lagoon near Kiel/Germany from December 1964 to June 1967. In addition 120 samples were taken in June 1966 to investigate the general pattern of distribution. Two species of the offshore fauna were found to dominate the lagoon (high population densities): Cribrononion articulatum and Miliammina fusca. The 'Vegetation zone' of the lagoon contains an assemblage of seven euryhaline arenaceous species. All of them were previously recorded from different regions of the world. - C. articulatum seems to prefer shallow water with a high daily range of water temperature (up to 30° Cels.). Population density and distribution show considerable differences between the different years. Size distribution curves of C. articulatum indicate main reproduction activity in spring and subsequent growth in uniform populations. Growth is terminated after six months but most of the specimens will either die in winter or reproduce the next spring; only a smaller amount is reproducing in summer or autumn. - Annual differences of the observed degree make it difficult to calculate foraminiferal productivity in a lagoonal environment and require seasonal observation over a period of at least 3 or 4 years.

Material remains of the Megiddo cult,

"List of abbreviations": p. xiii-xiv.

After death, an examination of the testimony of primitive times respecting the state of the faithful dead, and their relationship to the living /

Mode of access: Internet.

An essay on the recovery of the apparently dead /

Mode of access: Internet.

Pictorial and biographical memoirs of Elkhart and St. Joseph counties, Indiana, together with biographies of many prominent men of northern Indiana and of the whole state, both living and dead.

Cover title: Biographical and historical memoirs of Indiana.

Lions: living and dead; or, Personal recollections of the "great and gifted".

Added t.-p., engraved.

A practical guide for making post-mortem examinations, and for the study of morbid anatomy : with directions for embalming the dead, and for the preservation of specimens of morbid anatomy /

Mode of access: Internet.

In memoriam, founders and makers of Illinois; a memorial history of the state's honored dead ...

Mode of access: Internet.

Narrative of the United States' expedition to the river Jordan and the Dead sea,

Mode of access: Internet.