A Theory of How the Brain Might Work

I wish to propose a quite speculative new version of the grandmother cell theory to explain how the brain, or parts of it, may work. In particular, I discuss how the visual system may learn to recognize 3D objects. The model would apply directly to the cortical cells involved in visual face recognition. I will also outline the relation of our theory to existing models of the cerebellum and of motor control. Specific biophysical mechanisms can be readily suggested as part of a basic type of neural circuitry that can learn to approximate multidimensional input-output mappings from sets of examples and that is expected to be replicated in different regions of the brain and across modalities. The main points of the theory are: -the brain uses modules for multivariate function approximation as basic components of several of its information processing subsystems. -these modules are realized as HyperBF networks (Poggio and Girosi, 1990a,b). -HyperBF networks can be implemented in terms of biologically plausible mechanisms and circuitry. The theory predicts a specific type of population coding that represents an extension of schemes such as look-up tables. I will conclude with some speculations about the trade-off between memory and computation and the evolution of intelligence.

Non-commutative symbolic coding

Gohm, Rolf; Kummerer, B.; Lang, T., (2006) 'Non-commutative symbolic coding', Ergodic Theory and Dynamical Systems 26(5) pp.1521-1548 RAE2008

Analysis of Sequence Periodicity in E. coli Proteins: Empirical Investigation of the ?Duplication and Divergence? Theory of Protein Evolution

Gatherer, D., and McEwan, N.R. (2003). Analysis of sequence periodicity in E. coli proteins: empirical investigation of the 'duplication and divergence' theory of protein evolution. Journal of Molecular Evolution 57, 149-158. RAE2008

Accommodating interruptions: a grounded theory of young people with asthma

Background: Accommodating Interruptions is a theory that emerged in the context of young people who have asthma. A background to the prevalence and management of asthma in Ireland is given to situate the theory. Ireland has the fourth highest incidence of asthma in the world, with almost one in five Irish young people having asthma. Although national and international asthma management guidelines exist it is accepted that the symptom control of asthma among the young people population is poor. Aim: The aim of this research is to investigate the lives of young people who have asthma, to allow for a deeper understanding of the issues affecting them. Methods: This research was undertaken using a Classic Grounded Theory approach. It is a systematic approach to allowing conceptual emergence from data in generating a theory that explains behaviour in resolving the participant’s main concern. The data were collected through in-depth interviews with young people aged 11-16 years who had asthma for over one year. Data were also collected from participant diaries. Constant comparative analysis, theoretical coding and memo writing were used to develop the theory. Results: The theory explains how young people resolve their main concern of being restricted, by maximizing their participation and inclusion in activities, events and relationships in spite of their asthma. They achieve this by accommodating interruptions in their lives in minimizing the effects of asthma on their everyday lives. Conclusion: The theory of accommodating interruptions explains young people’s asthma management behaviours in a new way. It allows us to understand how and why young people behave the way they do in order minimise the effect of asthma on their lives. The theory adds to the body of knowledge on young people with asthma and challenges some viewpoints regarding their behaviours.

Implications of streamlining theory for microbial ecology

Whether a small cell, a small genome or a minimal set of chemical reactions with self-replicating properties, simplicity is beguiling. As Leonardo da Vinci reportedly said, 'simplicity is the ultimate sophistication'. Two diverging views of simplicity have emerged in accounts of symbiotic and commensal bacteria and cosmopolitan free-living bacteria with small genomes. The small genomes of obligate insect endosymbionts have been attributed to genetic drift caused by small effective population sizes (Ne). In contrast, streamlining theory attributes small cells and genomes to selection for efficient use of nutrients in populations where Ne is large and nutrients limit growth. Regardless of the cause of genome reduction, lost coding potential eventually dictates loss of function. Consequences of reductive evolution in streamlined organisms include atypical patterns of prototrophy and the absence of common regulatory systems, which have been linked to difficulty in culturing these cells. Recent evidence from metagenomics suggests that streamlining is commonplace, may broadly explain the phenomenon of the uncultured microbial majority, and might also explain the highly interdependent (connected) behavior of many microbial ecosystems. Streamlining theory is belied by the observation that many successful bacteria are large cells with complex genomes. To fully appreciate streamlining, we must look to the life histories and adaptive strategies of cells, which impose minimum requirements for complexity that vary with niche.

Fuzzy Coding of Genetic Algorithms

A well-cited paper suggesting fuzzy coding as an alternative to the conventional binary, grey and floating-point representations used in genetic algorithms.

Analysis, modeling, design and optimization of future communications systems: from theory to practice

Esta tese descreve uma framework de trabalho assente no paradigma multi-camada para analisar, modelar, projectar e optimizar sistemas de comunicação. Nela se explora uma nova perspectiva acerca da camada física que nasce das relações entre a teoria de informação, estimação, métodos probabilísticos, teoria da comunicação e codificação. Esta framework conduz a métodos de projecto para a próxima geração de sistemas de comunicação de alto débito. Além disso, a tese explora várias técnicas de camada de acesso com base na relação entre atraso e débito para o projeto de redes sem fio tolerantes a atrasos. Alguns resultados fundamentais sobre a interação entre a teoria da informação e teoria da estimação conduzem a propostas de um paradigma alternativo para a análise, projecto e optimização de sistemas de comunicação. Com base em estudos sobre a relação entre a informação recíproca e MMSE, a abordagem descrita na tese permite ultrapassar, de forma inovadora, as dificuldades inerentes à optimização das taxas de transmissão de informação confiáveis em sistemas de comunicação, e permite a exploração da atribuição óptima de potência e estruturas óptimas de pre-codificação para diferentes modelos de canal: com fios, sem fios e ópticos. A tese aborda também o problema do atraso, numa tentativa de responder a questões levantadas pela enorme procura de débitos elevados em sistemas de comunicação. Isso é feito através da proposta de novos modelos para sistemas com codificação de rede (network coding) em camadas acima da sua camada física. Em particular, aborda-se a utilização de sistemas de codificação em rede para canais que variam no tempo e são sensíveis a atrasos. Isso foi demonstrado através da proposta de um novo modelo e esquema adaptativo, cujos algoritmos foram aplicados a sistemas sem fios com desvanecimento (fading) complexo, de que são exemplos os sistemas de comunicação via satélite. A tese aborda ainda o uso de sistemas de codificação de rede em cenários de transferência (handover) exigentes. Isso é feito através da proposta de novos modelos de transmissão WiFi IEEE 801.11 MAC, que são comparados com codificação de rede, e que se demonstram possibilitar transferência sem descontinuidades. Pode assim dizer-se que esta tese, através de trabalho de análise e de propostas suportadas por simulações, defende que na concepção de sistemas de comunicação se devem considerar estratégias de transmissão e codificação que sejam não só próximas da capacidade dos canais, mas também tolerantes a atrasos, e que tais estratégias têm de ser concebidas tendo em vista características do canal e a camada física.

Cortical object segregation and categorization by multi-scale line and edge coding

In this paper we present an improved scheme for line and edge detection in cortical area V1, based on responses of simple and complex cells, truly multi-scale with no free parameters. We illustrate the multi-scale representation for visual reconstruction, and show how object segregation can be achieved with coarse-to-finescale groupings. A two-level object categorization scenario is tested in which pre-categorization is based on coarse scales only, and final categorization on coarse plus fine scales. Processing schemes are discussed in the framework of a complete cortical architecture.

The decoupling approach to quantum information theory

La théorie de l'information quantique étudie les limites fondamentales qu'imposent les lois de la physique sur les tâches de traitement de données comme la compression et la transmission de données sur un canal bruité. Cette thèse présente des techniques générales permettant de résoudre plusieurs problèmes fondamentaux de la théorie de l'information quantique dans un seul et même cadre. Le théorème central de cette thèse énonce l'existence d'un protocole permettant de transmettre des données quantiques que le receveur connaît déjà partiellement à l'aide d'une seule utilisation d'un canal quantique bruité. Ce théorème a de plus comme corollaires immédiats plusieurs théorèmes centraux de la théorie de l'information quantique. Les chapitres suivants utilisent ce théorème pour prouver l'existence de nouveaux protocoles pour deux autres types de canaux quantiques, soit les canaux de diffusion quantiques et les canaux quantiques avec information supplémentaire fournie au transmetteur. Ces protocoles traitent aussi de la transmission de données quantiques partiellement connues du receveur à l'aide d'une seule utilisation du canal, et ont comme corollaires des versions asymptotiques avec et sans intrication auxiliaire. Les versions asymptotiques avec intrication auxiliaire peuvent, dans les deux cas, être considérées comme des versions quantiques des meilleurs théorèmes de codage connus pour les versions classiques de ces problèmes. Le dernier chapitre traite d'un phénomène purement quantique appelé verrouillage: il est possible d'encoder un message classique dans un état quantique de sorte qu'en lui enlevant un sous-système de taille logarithmique par rapport à sa taille totale, on puisse s'assurer qu'aucune mesure ne puisse avoir de corrélation significative avec le message. Le message se trouve donc «verrouillé» par une clé de taille logarithmique. Cette thèse présente le premier protocole de verrouillage dont le critère de succès est que la distance trace entre la distribution jointe du message et du résultat de la mesure et le produit de leur marginales soit suffisamment petite.

Parenting, self-regulation and childhood anxiety : A Self-Determination Theory perspective

Le contrôle psychologique parental est un facteur de risque réputé pour les problèmes intériorisés des enfants (p. ex., Affrunti & Ginsburg, 2011; McLeod, Wood & Weisz, 2007). Selon la Théorie de l'auto-détermination, le contrôle psychologique mène aux problèmes intériorisés (Ryan, Deci, Grolnick, & La Guardia, 2006) car il brime le besoin fondamental d'autonomie. En effet, recevoir de la pression afin de penser, se comporter et se sentir d’une certaine façon (Ryan, 1982) semble favoriser une régulation trop rigide et surcontrôlée (Ryan et al., 2006). Suite aux travaux de Soenens et Vansteenkiste (2010), la distinction conceptuelle entre deux formes de contrôle psychologique, soit manifestes (p. ex., les menaces, forcer physiquement) et dissimulées (p. ex., la surprotection, le marchandage), ont été utilisées pour évaluer le style parental (Étude 1) et les pratiques disciplinaires (Étude 2). Le contrôle psychologique parental et le soutien de l'autonomie (Étude 2) ont été mesurés durant la petite enfance puisque (1) les problèmes intériorisés émergent tôt, (2) le développement du sentiment d'autonomie est central au cours de cette période, et (3) attire probablement plus de contrôle psychologique parental. Avec ses deux articles, la présente thèse vise à clarifier la façon dont le contrôle psychologique manifeste et dissimulé est lié au développement précoce de problèmes intériorisés. L'étude 1 est une étude populationnelle examinant l'impact relatif du style parental sur des trajectoires développementales d'anxiété (N = 2 120 enfants; de 2,5 à 8 ans) avec de nombreux facteurs de risque potentiels provenant de l'enfant, de la mère et de la famille, tous mesurés au cours de la petite enfance. Les résultats ont montré qu'en plus de la timidité des enfants, de la dépression maternelle et du dysfonctionnement familial, le contrôle psychologique manifeste (c.-à-d., coercitif) et dissimulé (c.-à-d., la surprotection) augmentent le risque, pour les enfants, de suivre une trajectoire d'anxiété élevée. Une interaction entre la dépression maternelle et le contrôle dissimulé a été trouvée, ce qui indique que la surprotection augmente l'anxiété des enfants seulement lorsque la dépression maternelle est élevée. Enfin, le contrôle dissimulé prédit également l'anxiété telle que rapportée par les enseignants de deuxième année. Le deuxième article est une étude observationnelle qui examine comment l'autorégulation (AR) des bambins est liée au développement précoce des symptômes intériorisés, tout en explorant comment les pratiques disciplinaires parentales (contrôle et soutien de l'autonomie) y sont associées. Les pratiques parentales ont été codifiées lors d'une requête de rangement à 2 ans (contexte "Do", N = 102), tandis que l'AR des bambins a été codifiée à la fois durant la tâche de rangement ("Do") et durant une tâche d'interdiction (ne pas toucher à des jouets attrayants; contexte «Don't » ), à 2 ans puis à 3 ans. Les symptômes d'anxiété / dépression des enfants ont été évalués par leurs parents à 4,5 ans. Les résultats ont révélé que l'AR aux interdictions à 3 ans diminue la probabilité des enfants à manifester des taux élevés de symptômes d'anxiété / dépression. Les analyses ont aussi révélé que le parentage soutenant l'autonomie était lié à l'AR des enfants aux requêtes, un an plus tard. En revanche, le contrôle psychologique manifeste et dissimulé ont eu des effets délétères sur l'AR. Enfin, seul le contrôle dissimulé a augmenté les probabilités de présenter des niveaux plus élevés de problèmes intériorisés et ce, au-delà de l’effet protecteur de l'AR des bambins. Des résultats mitigés sont issus de cette thèse concernant les effets respectifs des deux formes de contrôle sur les problèmes intériorisés, dépendamment de l'informateur (mère c. enseignant) et de la méthodologie (questionnaires c. données observationnelles). Toutefois, le contrôle psychologique dissimulé était lié à ce problème affectif dans les deux études. Enfin, le soutien à l'autonomie s’est révélé être un facteur de protection potentiel et mériterait d'être étudié davantage.

Non-commutative symbolic coding

We give a non-commutative generalization of classical symbolic coding in the presence of a synchronizing word. This is done by a scattering theoretical approach. Classically, the existence of a synchronizing word turns out to be equivalent to asymptotic completeness of the corresponding Markov process. A criterion for asymptotic completeness in general is provided by the regularity of an associated extended transition operator. Commutative and non-commutative examples are analysed.

A gestalt generated from grounded theory concerning intuition in IS research

Intuition is an important and under-researched concept in information systems. Prior exploratory research has shown that that there is potential to characterize the use of intuition in academic information systems research. This paper extends this research to all of the available issues of two leading IS journals with the aim of reaching an approximation of theoretical saturation. Specifically, the entire text of MISQ and ISR was reviewed for the years 1990 through 2009 using searchable PDF versions of these publications. All references to intuition were coded on a basis consistent with Grounded Theory, interpreted as a gestalt and represented as a mind-map. In the period 1990-2009, 681 incidents of the use of "intuition", and related terms were found in the articles reviewed, representing a greater range of codes than prior research. In addition, codes were assigned to all issues of MIS Quarterly from commencement of publication to the end of the 2012 publication year to support the conjecture that coding saturation has been approximated. The most prominent use of the term of "intuition" was coded as "Intuition as Authority" in which intuition was used to validate a statement, research objective or a finding; representing approximately 34 per cent of codes assigned. In research articles where mathematical analysis was presented, researchers not infrequently commented on the degree to which a mathematical formulation was "intuitive"; this was the second most common coding representing approximately 16 per cent of the codes. The possibly most impactful use of the term "intuition" was "Intuition as Outcome", representing approximately 7 per cent of all coding, which characterized research results as adding to the intuitive understanding of a research topic or phenomena.This research aims to contribute to a greater theoretical understanding of the use of intuition in academic IS research publications. It provides potential benefits to practitioners by providing insight into the use of intuition in IS management, for example, emphasizing the emerging importance of "intuitive technology". Research directions include the creation of reflective and/or formative constructs for intuition in information systems research and the expansion of this novel research method to additional IS academic publications and topics.