Panama City Fisheries Resources Office: FY 2006 Annual Report

HIGHLIGHTS FOR FY 2006 1. Captured and tagged 475 Gulf sturgeons in five Florida rivers and one bay. 2. Documented Gulf sturgeon marine movement and habitat use in the Gulf of Mexico. 3. Assisted the National Oceanic and Atmospheric Administration (NOAA) with the collection of Gulf sturgeon, implantation of acoustic tags, and monitoring of fish in a study to examine movement patterns and habitat use in Pensacola and Choctawhatchee bays post-Hurricane Ivan. 4. Provided technical assistance to Jon “Bo” Sawyer in completing a study – Summer Resting Areas of the Gulf Sturgeon in the Conecuh/Escambia River System, Alabama-Florida – for acquiring a Degree of Master of Science at Troy University, Alabama. 5. Coordinated tagging and data collection with NOAA observers aboard trawlers while collecting Gulf sturgeon during dredging operations in the coastal Gulf of Mexico. 6. Hosted the 7th Annual Gulf Sturgeon Workshop. 7. Implemented Gulf Striped Bass Restoration Plan by coordinating the 23rd Annual Morone Workshop, leading the technical committee, transporting broodfish, coordinating the stocking on the Apalachicola-Chattahoochee-Flint (ACF) river system, and evaluating post-stocking success. 8. Continued updating and managing the Freshwater Mussel Survey Database, a Geographic Information System (GIS) database, for over 800 unique sites in the Northeast Gulf (NEG) drainages in Alabama (AL), Georgia (GA), and Florida (FL). 9. Formed a recovery implementation team for listed mussels in the ACF river basin and oversaw grant cooperative agreements for 14 listed and candidate freshwater mussels in the NEG watersheds. 10. Initiated a project in the Apalachicola River to relocate mussels stranded as a result of drought conditions, and calculate river flows at which mussels would be exposed. 11. Initiated a project in Sawhatchee Creek, Georgia to determine the status of threatened and endangered (T&E) freshwater mussels and target restoration projects, population assessments, and potential population augmentation to lead toward recovery of the listed species. 12. Initiated a study to determine the age and growth of the endangered fat threeridge mussel (Amblema neislerii). 13. Provided technical assistance to the Panama City Ecological Services office for a biological opinion on the operations of Jim Woodruff Lock and Dam and its effects on the listed species and designated and proposed critical habitat in the Apalachicola River, Florida. 14. Assisted with a multi-State, inter-agency team to develop a management plan to restore the Alabama shad in the ACF river system. 15. Conducted fishery surveys on Tyndall AFB, Florida and Ft. Benning, Georgia and completed a report with recommendations for future recreational fishery needs. 16. Provided fishery technical assistance to four National Wildlife Refuges (NWR) (i.e., Okefenokee NWR, Banks Lake NWR, St. Vincent NWR, and St. Marks NWR). 17. Initiated an Aquatic Resources and Recreation Fishing Survey on Department of Defense facilities located in Region 4. 18. Identified 130 road-stream crossings on Eglin AFB for rehabilitation and elimination of sediment imputs. 19. Continued the Aquatics Monitoring Program at Eglin AFB to assess techniques that determine current status and sustainability of aquatic habitat and develop a measure to determine quality or degradation of habitat. 20. Assisted Eglin AFB Natural Resource managers in revising the installation’s Integrated Natural Resources Management Plan (INRMP) and its associated component plans. 21. Coordinated recovery efforts for the endangered Okaloosa darter including population/life history surveys, stream restoration, and outreach activities. 22. Initiated a comprehensive status review of the Okaloosa darter with analyses performed to assess available habitat, preferred habitats, range expansions/reductions/fragmentations, population size, and probability of extinction. 23. Assisted the Gulf Coastal Plain Ecosystem Partnership and the Florida Fish and Wildlife Conservation Commission (FWC) under a Memorandum of Agreement to develop conservation strategies, implement monitoring and assessment programs, and secure funds for aquatic management programs in six watersheds in northwest Florida and southeast Alabama. 24. Entered into a cooperative agreement with the U.S. Air Force to encourage the conservation and rehabilitation of natural resources at Hurlburt Field, Florida. 25. Multiple outreach projects were completed to detail aquatic resources’ conservation needs and opportunities; including National Fishing Week, Earth Day, several festivals, and school outreach.

Developing effective restoration plans to tackle the widespread impairment of coastal swimming and shellfishing waters

Congress established a legal imperative to restore the quality of our surface waters when it enacted the Clean Water Act in 1972. The act requires that existing uses of coastal waters such as swimming and shellfishing be protected and restored. Enforcement of this mandate is frequently measured in terms of the ability to swim and harvest shellfish in tidal creeks, rivers, sounds, bays, and ocean beaches. Public-health agencies carry out comprehensive water-quality sampling programs to check for bacteria contamination in coastal areas where swimming and shellfishing occur. Advisories that restrict swimming and shellfishing are issued when sampling indicates that bacteria concentrations exceed federal health standards. These actions place these coastal waters on the U.S. Environmental Protection Agencies’ (EPA) list of impaired waters, an action that triggers a federal mandate to prepare a Total Maximum Daily Load (TMDL) analysis that should result in management plans that will restore degraded waters to their designated uses. When coastal waters become polluted, most people think that improper sewage treatment is to blame. Water-quality studies conducted over the past several decades have shown that improper sewage treatment is a relatively minor source of this impairment. In states like North Carolina, it is estimated that about 80 percent of the pollution flowing into coastal waters is carried there by contaminated surface runoff. Studies show this runoff is the result of significant hydrologic modifications of the natural coastal landscape. There was virtually no surface runoff occurring when the coastal landscape was natural in places such as North Carolina. Most rainfall soaked into the ground, evaporated, or was used by vegetation. Surface runoff is largely an artificial condition that is created when land uses harden and drain the landscape surfaces. Roofs, parking lots, roads, fields, and even yards all result in dramatic changes in the natural hydrology of these coastal lands, and generate huge amounts of runoff that flow over the land’s surface into nearby waterways. (PDF contains 3 pages)

To pave or not to pave: A social landscape analysis of land use decision-making in the towns of the lamprey watershed

Population pressure in coastal New Hampshire challenges land use decision-making and threatens the ecological health and functioning of Great Bay, an estuary designated as both a NOAA National Estuarine Research Reserve and an EPA National Estuary Program site. Regional population in the seacoast has quadrupled in four decades resulting in sprawl, increased impervious surface cover and larger lot rural development (Zankel, et.al., 2006). All of Great Bay’s contributing watersheds face these challenges, resulting in calls for strategies addressing growth, development and land use planning. The communities within the Lamprey River watershed comprise this case study. Do these towns communicate upstream and downstream when making land use decisions? Are cumulative effects considered while debating development? Do town land use groups consider the Bay or the coasts in their decision-making? This presentation, a follow-up from the TCS 2008 conference and a completed dissertation, will discuss a novel social science approach to analyze and understand the social landscape of land use decision-making in the towns of the Lamprey River watershed. The methods include semi-structured interviews with GIS based maps in a grounded theory analytical strategy. The discussion will include key findings, opportunities and challenges in moving towards a watershed approach for land use planning. This presentation reviews the results of the case study and developed methodology, which can be used in watersheds elsewhere to map out the potential for moving towns towards EBM and watershed-scaled, land use planning. (PDF contains 4 pages)

A retrofitting framework for pre-Northridge steel moment-frame buildings

In the 1994 M_w 6.7 Northridge and 1995 M_w 6.9 Kobe earthquakes, steel moment-frame buildings were exposed to an unexpected flaw. The commonly utilized welded unreinforced flange, bolted web connections were observed to experience brittle fractures in a number of buildings, even at low levels of seismic demand. A majority of these buildings have not been retrofitted and may be susceptible to structural collapse in a major earthquake.

This dissertation presents a case study of retrofitting a 20-story pre-Northridge steel moment-frame building. Twelve retrofit schemes are developed that present some range in degree of intervention. Three retrofitting techniques are considered: upgrading the brittle beam-to-column moment resisting connections, and implementing either conventional or buckling-restrained brace elements within the existing moment-frame bays. The retrofit schemes include some that are designed to the basic safety objective of ASCE-41 Seismic Rehabilitation of Existing Buildings.

Detailed finite element models of the base line building and the retrofit schemes are constructed. The models include considerations of brittle beam-to-column moment resisting connection fractures, column splice fractures, column baseplate fractures, accidental contributions from ``simple'' non-moment resisting beam-to-column connections to the lateral force-resisting system, and composite actions of beams with the overlying floor system. In addition, foundation interaction is included through nonlinear translational springs underneath basement columns.

To investigate the effectiveness of the retrofit schemes, the building models are analyzed under ground motions from three large magnitude simulated earthquakes that cause intense shaking in the greater Los Angeles metropolitan area, and under recorded ground motions from actual earthquakes. It is found that retrofit schemes that convert the existing moment-frames into braced-frames by implementing either conventional or buckling-restrained braces are effective in limiting structural damage and mitigating structural collapse. In the three simulated earthquakes, a 20% chance of simulated collapse is realized at PGV of around 0.6 m/s for the base line model, but at PGV of around 1.8 m/s for some of the retrofit schemes. However, conventional braces are observed to deteriorate rapidly. Hence, if a braced-frame that employs conventional braces survives a large earthquake, it is questionable how much service the braces provide in potential aftershocks.

Caracterização físico-química e avaliação dos níveis de elementos-traço em sedimentos de manguezais das baías da Ilha Grande e de Sepetiba, RJ, por metodologias de digestão ácida assistidas por micro-ondas

O presente trabalho teve como objetivo principal comparar dois métodos de extração de elementos-traço em sedimentos que são assistidos por radiação micro-ondas. Foram coletadas amostras de sedimentos superficiais em um manguezal localizado na baía da Ilha Grande e em três manguezais localizados na baía de Sepetiba, RJ. As amostras de sedimentos coletadas foram secas, destorroadas e peneiradas. Sub-amostras foram submetidas a análises de caracterização física e química. Os métodos de extração de elementos-traço comparados foram o EPA-3051A e o método água régia assistido por micro-ondas. Os elementos-traço analisados foram: Cd, Cr, Cu, Ni, Pb e Zn. As concentrações dos elementos-traço nos extratos produzidos foram determinadas por FAAS (Espectrometria de absorção atômica com chama). Foram encontradas nos sedimentos dos manguezais estudados concentrações acima dos níveis estabelecidos pela Resolução CONAMA 344/2004 para os elementos-traço: Cd, Ni, Pb e Zn. Os resultados mostraram que as capacidades de extração de elementos-traço dos métodos EPA-3051A e água régia assistido por micro-ondas variam em função das características físico-químicas dos sedimentos. A análise estatística pela técnica de regressão linear simples mostrou que as duas metodologias são estatisticamente similares apenas para o Cr e os valores dos coeficientes de determinação (R2) obtidos obedeceram à seqüência: Cu > Pb > Zn > Ni > Cr > Cd. Na análise pela técnica estatística de regressão linear múltipla ocorreram melhorias estatisticamente significativas nos coeficientes de determinação quando foram incluídas as seguintes variáveis independentes: potencial redox e fósforo total para o Cd, argila para o Cr, areia para o Ni e fósforo total para o Pb e para o Zn

O uso do boto-cinza (Sotalia guianensis) como sentinela da poluição continental por compostos organoclorados (DDT, PCB, HCH, HCB e Mirex) em baías costeiras do Estado do Rio de Janeiro

Concentrações de compostos organoclorados (DDTs, PCBs, HCHs, Mirex e HCB) foram determinadas em camadas externas e internas do tecido adiposo subcutâneo de 17 botos-cinza (Sotalia guianensis) da região Sudeste do Brasil. Não houve diferenças estatísticas significativas entre os estratos, relativo aos 37 compostos determinados, assim como ΣDDT, ΣPCB, ΣHCH, e as razões p,p-DDE/ΣDDT e ΣDDT/ΣPCB. Entretanto, foram observadas diferenças significativas nas concentrações de alguns compostos organoclorados de animais encalhados ou capturados acidentalmente quando comparados com animais biopsiados remotamente, sendo assim as comparações entre esses dois conjuntos de dados, devem ser vistas com cuidado. No presente estudo, as concentrações dos compostos organoclorados foram determinadas em biópsias de botos-cinza obtidas de 2007 a 2009, nas baías de Sepetiba (n=13) e Ilha Grande (n=11), Sudeste do Brasil. As concentrações (ng/g de lipídio) variaram de

Dieta do boto-cinza (Sotalia guianensis Van Benédén, 1864) (Cetacea: Delphinidae) na Baía de Sepetiba (RJ)

O boto-cinza (Sotalia guianensis Van Benédén, 1864) é um pequeno cetáceo da família Delphinidae. Ocorre em águas costeiras da América do Sul e Central, associado à ambientes estuarinos, às baías e áreas protegidas. Estudos sobre hábitos alimentares são importantes para avaliar os padrões de relação entre presa e predador. Desta forma, o conhecimento da composição da dieta do predador pode fornecer informações a respeito de sua distribuição, padrões de migração e de seu comportamento, além de contribuir com informações sobre a biologia e comportamento de suas presas. Neste trabalho, são abordados aspectos da ecologia alimentar do boto-cinza da Baía de Sepetiba, com o objetivo de caracterizar a dieta e compará-la em relação ao sexo, classe etária e estações do ano, a partir da análise do conteúdo estomacal de 76 botos-cinza encalhados entre 2005 e 2011. Os itens alimentares recuperados dos estômagos como otólitos e ossos de peixes, bicos de cefalópodes, carapaças de crustáceos, foram identificados baseando-se em trabalhos de identificação e em uma coleção de referência. O comprimento e biomassa das presas foram estimados com o uso de equações de regressão encontradas na literatura para estas espécies. As amostras foram separadas em machos adultos, fêmeas adultas e juvenis, e em estações quente/chuvosa (out-abr) e fria/seca (mai-set), em que os estômagos foram recuperados. Um total de 1800 presas foi identificado, relativo a 23 espécies de teleósteo, quatro espécies de cefalópode e três de crustáceo. O boto-cinza da Baía de Sepetiba apresentou uma dieta tipicamente piscívora, com um hábito alimentar no qual, poucas espécies foram consumidas em alta frequencia. Todas as presas identificadas têm distribuição costeira sendo a maioria estuarina de pequeno porte ou juvenil. As presas mais importantes na dieta do boto-cinza, segundo o índice de importância relativa (IIR), foram Cetengraulis edentulus; Micropogonias furnieri; Mugil spp.; Chloroscombrus chrysurus; Cynoscion jamaicensis; Stellifer sp.; e Sciadeichthys luniscutis. Dentre os cefalópodes, a lula Doryteuthis plei foi à presa mais importante. Este estudo indica que o boto-cinza apresenta variações intra-específicas no seu hábito alimentar entre fêmeas adultas, machos adultos e juvenis, além de variações sazonais na composição de sua dieta. A partir do conhecimento do comportamento e hábito de suas presas, pode-se concluir que, Sotalia guianensis da Baía de Sepetiba se alimenta ao longo de toda a Baía, além de utilizar áreas costeiras próximas para atividades de alimentação e forrageio.

Distribuição espacial do pico e ultraplâncton na plataforma continental e talude entre Cabo Frio (RJ) e Ubatuba (SP) e sua relação com a hidrodinâmica local: inverno de 2010

O picoplâncton (0,2 - 2,0 m) e ultraplâncton (> 2,0 - 5,0 m) despertam interesse por utilizarem ativamente a matéria orgânica dissolvida, estabelecendo a alça microbiana. Responsáveis por 50-80% da produção primária em águas oligotróficas, essas frações apresentam elevadas eficiência luminosa e razão superfície/volume que as permitem alcançar alto desenvolvimento mesmo sob baixas luminosidade e disponibilidade de nutrientes. Buscando relacionar a distribuição espacial e composição da comunidade pico e ultraplanctônica aos controles bottom-up na plataforma continental e talude ao largo dos Estados do Rio de Janeiro e São Paulo (22S a 26S), foram coletadas amostras de água em 39 estações oceanográficas e utilizadas as imagens dos sensores MODIS Terra e Aqua, bem como dados de hidrografia, para a descrição dos fenômenos oceanográficos de mesoescala. A abundância total de ambas as frações de tamanho, assim como a dominância do picoplâncton, reduziu em função do distanciamento da costa. Os organismos autotróficos foram em média (102 cél.mL-1 a 104 cél.mL-1 ) majoritariamente uma ordem de grandeza inferiores aos heterotróficos (103 cél.mL-1 a 105 cél.mL-1). A Água Central do Atlântico Sul (ACAS) e as plumas das baías de Guanabara e Sepetiba (RJ) permaneceram na plataforma interna favorecendo o aumento na concentração dos macronutrientes e refletindo na mudança da estrutura da comunidade através do aumento da contribuição de autótrofos no centro da plataforma, principalmente do ultraplâncton à superfície (cerca de 21%) e na profundidade do máximo de clorofila (44%). O transporte de águas costeiras carreadas por uma corrente de origem sul gerou o vórtice de plataforma identificado nas imagens de satélite para a região da plataforma interna de Ubatuba (SP), onde concentrações mais elevadas de amônio (0,28 M) e fosfato (9,64 M) a partir dos 50 m sustentaram maior densidade do ultra autótrofo (2,89 x 103 cél.mL-1) que superou a densidade de heterótrofos (2,50 x 103 cél.mL-1) no máximo de clorofila. Os resultados destacaram um forte gradiente nerítico-oceânico na distribuição dos organismos. Sugerem ainda a predominância do metabolismo heterotrófico na maior parte das águas oligotróficas da plataforma e talude entre o Rio de Janeiro e São Paulo, bem como a presença de caráter autotrófico naquelas regiões influenciadas por feições de mesoescala, como plumas estuarinas e vórtices de plataforma.

Distribuição do material particulado em suspensão na plataforma continental e talude superior entre Ubatuba (SP) e o cabo Búzios (RJ)

A pesquisa aqui apresentada amostrou a plataforma continental e talude superior entre Ubatuba (SP) e o cabo Búzios (RJ), em dois projetos de escala local e de meso-escala. A campanha entre Ubatuba e o cabo Frio foi realizada no âmbito do projeto Oceano-Rio: levantamentos oceanográficos integrados ao largo do Estado do Rio de Janeiro, realizado em colaboração com o Ministério de Ciência e Tecnologia (MCT) e com a cooperação da Marinha do Brasil (MB), a bordo do Navio Hidro-oceanográfico Cruzeiro do Sul. Dos dados coletados nesta campanha oceanográfica, foram analisados os dados de CTD, concentração de oxigênio dissolvido, fluorescência, transmissividade, atenuação, retro-espalhamento além de amostras de água para a determinação direta da concentração de material particulado em suspensão (MPS). No experimento de menor escala, entre o cabo Frio e o cabo Búzios, além destes dados, foi realizado um fundeio entre 02 e 30 de julho de 2011, que amostrou a intensidade do eco, as correntes e as ondas. As análises realizadas permitiram observar uma grande abrangência da massa dágua característica da Ressurgência sobre a plataforma continental entre Ubatuba (SP) e cabo Búzios (RJ), inclusive em regiões muito rasas. A ressurgência nem sempre ocorreu associada aos ventos NE, sugerindo que a ocorrência de vórtices tem grande influência sobre o Sistema de Ressurgência de Cabo Frio. O padrão de distribuição de MPS na região é muito influenciado pela ressuspensão dos sedimentos de fundo (aumentada durante as tempestades, quando a coluna dágua passa a apresentar maiores concentrações de MPS), produção fitoplanctônica e aporte das baías costeiras. Outros processos que parecem influenciar este padrão são os vórtices e as ondas internas no talude. A complexidade da interação destas diferentes fontes de MPS e processos associados à sua distribuição ficou evidenciada no processo de conversão dos sinais óticos do transmissômetro e nefelômetro em concentração de MPS. Apesar desta dificuldade associada à grande variabilidade das características do MPS, as análises dos testes de conversão do sinal ótico em concentração de MPS permitem concluir que as melhores conversões podem ser obtidas após a inspeção visual das concentrações de MPS medidos (filtração) e remoção das amostras que não seguem a tendência geral esperada de dispersão sinal ótico versus concentração de MPS.

L'oxygène dissous en Lagune Ebrié: Influences de l'hydroclimat et des pollutions

The hydrology of the Ebrie coastal lagoon in Abidjan area is summarized. The authors describe the oxygenation in that area during the two extreme seasons of the hydrological cycle: the low-water season (March-April) and the high-water season (Sept-Oct). The influences of the continental and oceanic waters, photosynthesis, exchanges with the atmosphere and pollution are considered. The oxigen consumption of primary organic pollution represents from 9 to 12% of the content of the waters that circulates in the area. It is geographically very heterogeneous. The central basin, swept by strong marine and fresh water currents, shows a rather high level of water oxygenation. In the peripheric bays, water circulation and mixing are less important and pollution accelerates the natural eutrophic processes. During the low-water season, a vertical stratification is responsible for a bottom anoxic layer and the deposit of reduced organic silts. On the contrary, supersaturations, up to 200%, are recorded on the surface layer. During the high-water season the break of the vertical stratification sets the loose reduced silts into suspension and partly reoxygenates the bottom waters. A classification of the different areas, based on the oxygen vertical profiles is proposed.

Regional and seasonal patterns of epipelagic fish assemblages from the central California Current

The coastal Pacific Ocean off northern and central California encompasses the strongest seasonal upwelling zone in the California Current ecosystem. Headlands and bays here generate complex circulation features and confer unusual oceanographic complexity. We sampled the coastal epipelagic fish community of this region with a surface trawl in the summer and fall of 2000–05 to assess patterns of spatial and temporal community structure. Fifty-three species of fish were captured in 218 hauls at 34 fixed stations, with clupeiform species dominating. To examine spatial patterns, samples were grouped by location relative to a prominent headland at Point Reyes and the resulting two regions, north coast and Gulf of the Farallones, were plotted by using nonmetric multidimensional scaling. Seasonal and interannual patterns were also examined, and representative species were identified for each distinct community. Seven oceanographic variables measured concurrently with trawling were plotted by principal components analysis and tested for correlation with biotic patterns. We found significant differences in community structure by region, year, and season, but no interaction among main effects. Significant differences in oceanographic conditions mirrored the biotic patterns, and a match between biotic and hydrographic structure was detected. Dissimilarity between assemblages was mostly the result of differences in abundance and frequency of occurrence of about twelve common species. Community patterns were best described by a subset of hydrographic variables, including water depth, distance from shore, and any one of several correlated variables associated with upwelling intensity. Rather than discrete communities with clear borders and distinct member species, we found gradients in community structure and identified stations with similar fish communities by region and by proximity to features such as the San Francisco Bay.

Spatial and seasonal abundance of sand seatrout (Cynoscion arenarius) and silver seatrout (C. nothus) off the coast of Texas, determined with twenty years of data (1987–200

Sand seatrout (Cynoscion arenarius) and silver seatrout (C. nothus) are both found within the immediate offshore areas of the Gulf of Mexico, especially around Texas; however information is limited on how much distributional overlap really occurs between these species. In order to investigate spatial and seasonal differences between species, we analyzed twenty years of bay and offshore trawl data collected by biologists of the Coastal Fisheries Division, Texas Parks and Wildlife Department. Sand seatrout and silver seatrout were distributed differently among offshore sampling areas, and salinity and water depth appeared to correlate with their distribution. Additionally, within the northernmost sampling area of the gulf waters, water depth correlated significantly with the presence of silver seatrout, which were found at deeper depths than sand seatrout. There was also an overall significant decrease in silver seatrout abundance during the summer season, when temperatures were at their highest, and this decrease may have indicated a migration farther offshore. Sand seatrout abundance had an inverse relationship with salinity and water depth offshore. In addition, sand seatrout abundance was highest in bays with direct passes to the gulf and correlated with corresponding abundance in offshore areas. These data highlight the seasonal and spatial differences in abundance between sand and silver seatrout and relate these differences to the hydrological and geological features found along the Texas coastline.