Analysis of Puumala hantavirus in a bank vole population in northern Finland: evidence for co-circulation of two genetic lineages and frequent reassortment between strains

"In this study, for the first time, two distinct genetic lineages of Puumala virus (PUUV) were found within a small sampling area and within a single host genetic lineage (Ural mtDNA) at Pallasjarvi, northern Finland. Lung tissue samples of 171 bank voles (Myodes glareolus) trapped in September 1998 were screened for the presence of PUUV nucleocapsid antigen and 25 were found to be positive. Partial sequences of the PUUV small (S), medium (M) and large (L) genome segments were recovered from these samples using RT-PCR. Phylogenetic analysis revealed two genetic groups of PUUV sequences that belonged to the Finnish and north Scandinavian lineages. This presented a unique opportunity to study inter-lineage reassortment in PUUV; indeed, 32% of the studied bank voles appeared to carry reassortant virus genomes. Thus, the frequency of inter-lineage reassortment in PUUV was comparable to that of intra-lineage reassortment observed previously (Razzauti, M., Plyusnina, A., Henttonen, H. & Plyusnin, A. (2008). J Gen Virol 89, 1649-1660). Of six possible reassortant S/M/L combinations, only two were found at Pallasjarvi and, notably, in all reassortants, both S and L segments originated from the same genetic lineage, suggesting a non-random pattern for the reassortment. These findings are discussed in connection to PUUV evolution in Fermoscandia."

Corporate Governance in European Banks: Essays on Bank Ownership

Banks are important as they have a central role in the financial system, where funds are channelled either through financial intermediaries, such as banks, or through financial markets, hence promoting growth in any economy. Recently, we have been reminded of the drawbacks of the central role of banks. The current financial crisis, which started out as a sub-prime mortgage crisis in the US, has become a global financial crisis with substantial impact on the real economy in many countries. Some of the roots to the current financial crisis can be sought in the changing role of banks and in bank corporate governance. Moreover, the substantial revitalising measures taken have been justified by the central role of banks. Not only are banks important, they are also very special. The fact that banks are regulated in conjunction with greater opacity, make bank corporate governance different from corporate governance in non-bank companies. Surprisingly little is, however, known about bank corporate governance, in particularly, in a European setting. Hence, the objective of this doctoral thesis is to provide new insights in this research area by examining banks from 37 different European countries. Each of the three essays included in the doctoral thesis examines a particular aspect of bank corporate governance. In the first essay the interaction between the regulatory environment a bank operates in and its ownership structure is explored. Indicators of the severity of the moral hazard problem induced by the deposit insurance system and implicit too-big-to-fail government guarantee, particular features of deposit insurance systems as well as legal protection of shareholders, legal origin of a country and level of integration to the European community are used in the analysis. The empirical findings confirm previous findings on the link between legal protection of shareholders and ownership structure. Moreover, they show that differences in deposit insurance system features can explain some of the differences in ownership structure across European banks. In the second essay the impact of management and board ownership on the profitability of banks with different strategy is examined. The empirical findings suggest that the efficiency of these two particular corporate governance mechanisms varies with the characteristics of the agency problem faced by the bank. More specifically, management ownership is important in opaque non-traditional banks, whereas board ownership is important in traditional banks, where deposit insurance reduces the monitoring incentives of outsiders. The higher profitability does, however, go together with higher risk. In the third essay the profitability and risk of commercial, savings and cooperative banks are compared. The empirical findings suggest that distinct operational and ownership characteristics rather than only the mere fact that a bank is a commercial, savings or cooperative bank explain the profitability and risk differences. The main insight from the three essays is that a number of different aspects should be addressed simultaneously in order to give the complexity of bank corporate governance justice.

Comparative study of filter-bank mean-energy distance for automated segmentation of speech signals

This paper describes a method of automated segmentation of speech assuming the signal is continuously time varying rather than the traditional short time stationary model. It has been shown that this representation gives comparable if not marginally better results than the other techniques for automated segmentation. A formulation of the 'Bach' (music semitonal) frequency scale filter-bank is proposed. A comparative study has been made of the performances using Mel, Bark and Bach scale filter banks considering this model. The preliminary results show up to 80 % matches within 20 ms of the manually segmented data, without any information of the content of the text and without any language dependence. 'Bach' filters are seen to marginally outperform the other filters.

Monetary policy rules and estimated reaction functions for the European Central Bank

This thesis studies the interest-rate policy of the ECB by estimating monetary policy rules using real-time data and central bank forecasts. The aim of the estimations is to try to characterize a decade of common monetary policy and to look at how different models perform at this task.The estimated rules include: contemporary Taylor rules, forward-looking Taylor rules, nonlinearrules and forecast-based rules. The nonlinear models allow for the possibility of zone-like preferences and an asymmetric response to key variables. The models therefore encompass the most popular sub-group of simple models used for policy analysis as well as the more unusual non-linear approach. In addition to the empirical work, this thesis also contains a more general discussion of monetary policy rules mostly from a New Keynesian perspective. This discussion includes an overview of some notable related studies, optimal policy, policy gradualism and several other related subjects. The regression estimations are performed with either least squares or the generalized method of moments depending on the requirements of the estimations. The estimations use data from both the Euro Area Real-Time Database and the central bank forecasts published in ECB Monthly Bulletins. These data sources represent some of the best data that is available for this kind of analysis. The main results of this thesis are that forward-looking behavior appears highly prevalent, but that standard forward-looking Taylor rules offer only ambivalent results with regard to inflation. Nonlinear models are shown to work, but on the other hand do not have a strong rationale over a simpler linear formulation. However, the forecasts appear to be highly useful in characterizing policy and may offer the most accurate depiction of a predominantly forward-looking central bank. In particular the inflation response appears much stronger while the output response becomes highly forward-looking as well.

PDB Goodies - a web-based GUI to manipulate the Protein Data Bank file

PDB Goodies is a web-based graphical user interface (GUI) to manipulate the Protein Data Bank file containing the three-dimensional atomic coordinates of protein structures. The program also allows users to save the manipulated three-dimensional atomic coordinate file on their local client system. These fragments are used in various stages of structure elucidation and analysis. This software is incorporated with all the three-dimensional protein structures available in the Protein Data Bank, which presently holds approximately 18 000 structures. In addition, this program works on a three-dimensional atomic coordinate file (Protein Data Bank format) uploaded from the client machine. The program is written using CGI/PERL scripts and is platform independent. The program PDB Goodies can be accessed over the World Wide Web at http:// 144.16.71.11/pdbgoodies/.

Design and Application of a new Multiscale Multidirectional Non-subsampled Filter Bank

We propose a new method for design of computationally efficient nonsubsampled multiscale multidirectional filter bank with perfect reconstruction (PR). This filter bank is composed of two nonsubsampled filter banks, for multiscale decomposition and for directional expansion. For multiscale decomposition, we transform the 1-D equivalent subband filters directly into 2-D equivalent subband filters. The computational cost is considerably reduced by avoiding the computation of 2-D convolutions. The multidirectional decomposition utilizes fan filters. A new method for design of 2-D zero phase FIR fan filter transformation function is developed. This method also aids the transformation of a 1-D filter bank to a 2-D multidirectional filter bank. The potential application of the proposed filter bank is illustrated by comparing the image denoising performance of the proposed filter bank with other design method that exist in available literature.

Iterated stochastic filters with additive updates for dynamic system identification: Annealing-type iterations and the filter bank

A nonlinear stochastic filtering scheme based on a Gaussian sum representation of the filtering density and an annealing-type iterative update, which is additive and uses an artificial diffusion parameter, is proposed. The additive nature of the update relieves the problem of weight collapse often encountered with filters employing weighted particle based empirical approximation to the filtering density. The proposed Monte Carlo filter bank conforms in structure to the parent nonlinear filtering (Kushner-Stratonovich) equation and possesses excellent mixing properties enabling adequate exploration of the phase space of the state vector. The performance of the filter bank, presently assessed against a few carefully chosen numerical examples, provide ample evidence of its remarkable performance in terms of filter convergence and estimation accuracy vis-a-vis most other competing filters especially in higher dimensional dynamic system identification problems including cases that may demand estimating relatively minor variations in the parameter values from their reference states. (C) 2014 Elsevier Ltd. All rights reserved.

Evaluacion de alternativas quimicas y botanicas para el manejo del acaro blanco (Poliphagotarsonemus latus, Bank) en chiltoma (Capsicum annum L.) Tisma, Masaya

El ácaro blanco ( Poliphagotarsonemus latus, Bank) se ha convertido en un severo proble ma fitosanitario y socioeconómico para los productores de chiltoma ( Capsicum annum L.) del municipio de Tisma, Masaya. Esta plaga ha provocado grandes e importantes pérdidas económicas al reducir los rendimientos hasta en un 90%, disminuyendo así la calid ad y aumentando los costos de producción de la chiltoma. Ante la problemática existente en el municipio de Tisma y con el objetivo de encontrar una solución, se realizó un estudio en el periodo comprendido entre el mes de Agosto del 2007 a Enero del 2008, donde se evaluaron cuatro alternativas químicas y una botánica para el manejo del acaro blanco. Las alternativas evaluadas fueron: Oberón, Caldo sulfacálcico, Nim, Azufre y Vertimec en comparación con el testigo (aplicación de agua). Las variables evaluada s en el estudio fueron: Identificación del acaro blanco y sus daños en las plantas de chiltoma, Acaro blanco ( Poliphagotarsonemus latus, Bank ) por planta, Incidencia y Severidad del daño de acaro blanco, rendimiento en (kg ha - 1 ), altura de la planta (cm). Para decidir el momento de las aplicaciones de los productos se realizaron monitoreos semanales con una lupa de 16x tomando como nivel crítico un acaro por hoja tierna. Los resultados obtenidos en el estudio indican que el tratamiento Oberón fue el que pr esentó las poblaciones más bajas del acaro blanco, además de ser el más efectivo en el manejo, ya que las plantas tratadas con este producto presentaron el porcentaje de severidad más bajo en comparación con los demás tratamientos en estudio. El análisis e conómico realizado en este estudio determinó que el tratamiento Oberón fue el que presentó el mayor rendimiento, menor costo variable y fue el que obtuvo el mayor beneficio neto en comparación con los demás tratamientos en estudio

Evaluación de alternativas botánicas y químicas para el manejo del acaro blanco (Poliphagotarsonemus latus, Bank)(Acarina: Tarsonemidae) e insectos plagas en el cultivo de chiltoma (Capsicum annuum L.) Tisma, Masaya

El ácaro blanco (Poliphagotarsonemus latus , Bank), es uno de los problemas fitosanitarios más severos para los productores de chiltoma ( Capsicum annuum , L.) en el municipio de Tisma, Masaya. Esta plaga ha provocado importantes pérdidas económicas, disminuyendo así la calidad de los frutos y aumentando los costos de producción. En vista de este problema en el municipio de Tisma, se realizó un estudio en el periodo comprendido entre los meses de Septiembre a Diciembre del año 2009, donde se evaluaron algunas alternativas botánicas y químicas para el manejo del acaro blanco. Las alternativas evaluadas fueron: Oberon, Chile+Ajo+Jabón, Rienda, Vertimec, Sulfato de Amonio. Los resultados obtenidos en el estudio indican que el tratamiento Rienda fue el tratamiento con mejor control en el manejo del acaro blanco (39%) comparado con el testigo, ya que las plantas tratadas con este producto presentaron el menor número de ácaros por planta (2.73), menor porcentaje de incidencia (33%) y severidad (19%) en comparación con los demás tratamientos evaluados. Los tratamientos que obtuvieron los mejores rendimientos en k/Ha fueron Vertimec con (12237) y Oberon con (10944), Sulfato de Amonio obtuvo (9353). En el análisis de tasa de retorno marginal el tratamiento Vertimec es el que obtuvo mejor resultado con 659.53%.

Evaluación de productos botánicos y químicos para el manejo del acaro blanco (Poliphagotarsonemus latus, Bank) y otras plagas claves en el cultivo de chiltoma (Capsicum annuum L.) y su efecto en los enemigos naturales en Tisma, Masaya

El ácaro blanco ( Poliphagotarsonemus latus , Bank), es uno de los problemas fitosanitarios más severos para los productores de chiltoma ( Capsicum annuum , L.) en el municipio de Tisma, Masaya. Esta plaga ha ocasionado importantes pérdidas económicas, ya que reduce los rendimientos, disminuyendo así la calidad de los frutos y aumenta los costos de producción. En vista de este problema en el municipio de Tisma, se realizó un estudio con en el objetivo de evaluar productos botánicos y químicos para el manejo del ácaro blanco en chiltoma en el período comprendido entre los meses de Julio a Octubre del año 2009, donde se evaluaron algunos productos botánicos y químicos para el manejo del ácaro blanco. Los productos evaluados fueron: Chile + Jabón, Oberón, Neem, Vertimec, Ajo + jabón en comparación con el Testigo. Las variables evaluadas fueron: Fluctuación poblacional del ácaro blanco , Incidencia y Severidad de daño de ácaro por planta, rendimiento (Kg/ha-1) y fluctuación poblacional de organismos plagas y benéficos asociados al cultivo de la chiltoma como: Mosca blanca ( Bemisia tabaci), Áfidos (Aphis gossypii ), Minador de la hoja ( Liriomyza sp ), Mariquitas ( Coccinella sp ), Hormigas ( Atta sp ) y Arañas. Los resultados obtenidos en el estudio indican que el tratamiento Oberón presento la menor fluctuación poblacional de ácaro blanco seguido por los tratamientos Vertimec y Chile + jabón, el tratamiento Oberón fue el tratamiento con menor incidencia y severidad del daño de ácaro. El análisis económico realizado en este estudio determinó que el tratamiento Oberón fue el que presentó el mayor rendimiento y obtuvo el mayor beneficio neto, por el contrario el tratamiento que presentó los mayores costos variables fue el tratamiento Vertimec, seguido por el Neem. Además en este estudio se muestrearon las fluctuaciones poblacionales de otros organismos plagas y benéficos relacionados al cultivo de la chiltoma, donde resultados de este estudio demuestran que los productos utilizados para el manejo del ácaro blanco no tienen ningún efecto en las poblaciones de estos insectos.

Plaguicidas botánicos y químicos para el control del ácaro blanco (Polyphagotarsonemus latus Bank) (Acarina: Tarsonemidae) en chiltoma (Capsicum annuum L.), Tisma, Masaya

El ácaro blanco (Polyphagotarsonemus latus Bank), es uno de los problemas fitosanitarios más severos para los productores de chiltoma (Capsicum annuum L.) en el municipio de Tisma, Masaya.Esta plaga ha ocasionado importantes pérdidas económicas, ya que reduce los rendimientos, disminuye la calidad de los frutos y aumenta los costos de producción. Por esta razón, en el municipio de Tisma, se realizó este estudio con en el objetivo de evaluar productos botánicos y químicos para el manejo del ácaro blanco en el cultivo de chiltoma durante el período de julio a octubre del año 2009. Los productos evaluados fueron: Chile + Jabón, Oberón, Neem, Vertimec, Ajo + jabón en comparación con el testigo. Las variables evaluadas fueron: fluctuación poblacional del ácaro blanco, incidencia y severidad de daño de ácaro por planta, y rendimiento en kg ha-1. Los resultados obtenidos indican que el tratamiento Oberón presentó la menor fluctuación poblacional de ácaro blanco, seguido por los tratamientos Vertimec y Chile + jabón, el tratamiento Oberón fue el tratamiento con menor incidencia y severidad del daño causado por el ácaro. El análisis económico realizado en este estudio determinó que el tratamiento Oberón fue el que presentó mayor rendimiento y beneficio neto, por el contrario el tratamiento que presentó los mayores costos variables fue el tratamiento Vertimec, seguido por el Neem.

Manejo del complejo plagas raspadores chupadores ácaro blanco (Polyphagotarsonemus latus, Bank) y trips (Frankliniella occidentalis, Pergande.) en chiltoma (Capsicum annum L.) en campo abierto, Managua, Nicaragua 2014

El ácaro blanco ( Polyphagotarsonemus latus, Bank ) y Trips ( Frankliniella occidentalis , Pergande ) se han convertido en problemas fitosanitarios importantes en el cultivo de Chiltoma ( Capsicum annuum , L.), e stas plagas han provocado importantes pérdidas e conómicas, disminuyendo así la calidad de los frutos y aumentando los costos de producción. Se realizó un e studio entre los meses de octubre del 2014 y enero del 2015 en la finca el plantel de la Universidad Nacional Agraria, con el propósito de encontrar alternativas que den solución al problema. Se utilizó un diseño bifactorial en parcelas divididas con un arreglo en BCA. El factor cobertura plástica mulch con dos niveles (con y sin cobert ura) y el factor tipo de manejo con cuatro niveles (Químico sintético, Entomopatógenos , Químico sintético + Entomopatógenos y testigo) para un total de ocho tratamientos con tres repeticiones. Se evaluó el uso de plástico mulch en la parcela grande y el tipo de manejo en la parcela pequeña. El tipo de manejo Químico sintético (Spiromesifen, Imidacloprid, Spinosad, Muralla delt a y Abamectina), manejo Entomopatógenos ( Beauveria bassiana y Metarhizium anisopliae ) y un manejo con productos Químico sintético + Entomopatógenos . Los resultados demostraron diferencias significativas en la interacción de los tratamientos para la variab le número de ácaros por planta . De acuerdo a la prueba de Tuckey aplicada para el factor manejo , los tratamientos evaluados se ubican en la misma categoría estadística a excepción del testigo . Los mismos factores y sus respectivos niveles evaluados , no t uvieron efecto sobre la variable número de Trips por planta. En el análisis de rendimiento mostró diferencias significativas en el factor cobertura ( α= 0.00013336 ) ; el uso de plástico mulch obtuvo mayor rendimiento con 7,405 kg/ha . Segú n la tasa de retorno marginal , el tratamiento más rentable fue con cobertura testigo ya que presentó una ta sa de retorno marginal de 743.82 %

Support for Integrated Ecosystem Assessments of NOAA’s National Estuarine Research Reserves System (NERRS), Volume II: Assessment of Ecological Condition and Stressor Impacts in Subtidal Waters of the North Carolina NERRS

A study was conducted to assess the status of ecological condition and potential human-health risks in subtidal estuarine waters throughout the North Carolina National Estuarine Research Reserve System (NERRS) (Currituck Sound, Rachel Carson, Masonboro Island, and Zeke’s Island). Field work was conducted in September 2006 and incorporated multiple indicators of ecosystem condition including measures of water quality (dissolved oxygen, salinity, temperature, pH, nutrients and chlorophyll, suspended solids), sediment quality (granulometry, organic matter content, chemical contaminant concentrations), biological condition (diversity and abundances of benthic fauna, fish contaminant levels and pathologies), and human dimensions (fish-tissue contaminant levels relative to human-health consumption limits, various aesthetic properties). A probabilistic sampling design permitted statistical estimation of the spatial extent of degraded versus non-degraded condition across these estuaries relative to specified threshold levels of the various indicators (where possible). With some exceptions, the status of these reserves appeared to be in relatively good to fair ecological condition overall, with the majority of the area (about 54%) having various water quality, sediment quality, and biological (benthic) condition indicators rated in the healthy to intermediate range of corresponding guideline thresholds. Only three stations, representing 10.5% of the area, had one or more of these indicators rated as poor/degraded in all three categories. While such a conclusion is encouraging from a coastal management perspective, it should be viewed with some caution. For example, although co-occurrences of adverse biological and abiotic environmental conditions were limited, at least one indicator of ecological condition rated in the poor/degraded range was observed over a broader area (35.5%) represented by 11 of the 30 stations sampled. In addition, the fish-tissue contaminant data were not included in these overall spatial estimates; however, the majority of samples (77% of fish that were analyzed, from 79%, of stations where fish were caught) contained inorganic arsenic above the consumption limits for human cancer risks, though most likely derived from natural sources. Similarly, aesthetic indicators are not reflected in these spatial estimates of ecological condition, though there was evidence of noxious odors in sediments at many of the stations. Such symptoms reflect a growing realization that North Carolina estuaries are under multiple pressures from a variety of natural and human influences. These data also suggest that, while the current status of overall ecological condition appears to be good to fair, long-term monitoring is warranted to track potential changes in the future. This study establishes an important baseline of overall ecological condition within NC NERRS that can be used to evaluate any such future changes and to trigger appropriate management actions in this rapidly evolving coastal environment. (PDF contains 76 pages)

Support for Integrated Ecosystem Assessments of NOAA’s National Estuarine Research Reserves System (NERRS), Volume I: The Impacts of Coastal Development on the Ecology and Human Well-being of Tidal Creek Ecosystems of the US Southeast

A study was conducted, in association with the Sapelo Island and North Carolina National Estuarine Research Reserves (NERRs), to evaluate the impacts of coastal development on sentinel habitats (e.g., tidal creek ecosystems), including potential impacts to human health and well-being. Uplands associated with southeastern tidal creeks and the salt marshes they drain are popular locations for building homes, resorts, and recreational facilities because of the high quality of life and mild climate associated with these environments. Tidal creeks form part of the estuarine ecosystem characterized by high biological productivity, great ecological value, complex environmental gradients, and numerous interconnected processes. This research combined a watershed-level study integrating ecological, public health and human dimension attributes with watershed-level land use data. The approach used for this research was based upon a comparative watershed and ecosystem approach that sampled tidal creek networks draining developed watersheds (e.g., suburban, urban, and industrial) as well as undeveloped sites. The primary objective of this work was to clearly define the relationships between coastal development with its concomitant land use changes and non-point source pollution loading and the ecological and human health and well-being status of tidal creek ecosystems. Nineteen tidal creek systems, located along the southeastern United States coast from southern North Carolina to southern Georgia, were sampled during summer (June-August), 2005 and 2006. Within each system, creeks were divided into two primary segments based upon tidal zoning: intertidal (i.e., shallow, narrow headwater sections) and subtidal (i.e., deeper and wider sections), and watersheds were delineated for each segment. In total, we report findings on 24 intertidal and 19 subtidal creeks. Indicators sampled throughout each creek included water quality (e.g., dissolved oxygen concentration, salinity, nutrients, chlorophyll-a levels), sediment quality (e.g., characteristics, contaminants levels including emerging contaminants), pathogen and viral indicators, and abundance and genetic responses of biological resources (e.g., macrobenthic and nektonic communities, shellfish tissue contaminants, oyster microarray responses). For many indicators, the intertidally-dominated or headwater portions of tidal creeks were found to respond differently than the subtidally-dominated or larger and deeper portions of tidal creeks. Study results indicate that the integrity and productivity of headwater tidal creeks were impaired by land use changes and associated non-point source pollution, suggesting these habitats are valuable early warning sentinels of ensuing ecological impacts and potential public health threats. For these headwater creeks, this research has assisted the validation of a previously developed conceptual model for the southeastern US region. This conceptual model identified adverse changes that generally occurred in the physical and chemical environment (e.g., water quality indicators such as indicator bacteria for sewage pollution or sediment chemical contamination) when impervious cover levels in the watershed reach 10-20%. Ecological characteristics responded and were generally impaired when impervious cover levels exceed 20-30%. Estimates of impervious cover levels defining where human uses are impaired are currently being determined, but it appears that shellfish bed closures and the flooding vulnerability of headwater regions become a concern when impervious cover values exceed 10-30%. This information can be used to forecast the impacts of changing land use patterns on tidal creek environmental quality as well as associated human health and well-being. In addition, this study applied tools and technologies that are adaptable, transferable, and repeatable among the high quality NERRS sites as comparable reference entities to other nearby developed coastal watersheds. The findings herein will be of value in addressing local, regional and national needs for understanding multiple stressor (anthropogenic and human impacts) effects upon estuarine ecosystems and response trends in ecosystem condition with changing coastal impacts (i.e., development, climate change). (PDF contaions 88 pages)