Statistical modeling of large microarray data sets to identify stimulus-response profiles

A statistical modeling approach is proposed for use in searching large microarray data sets for genes that have a transcriptional response to a stimulus. The approach is unrestricted with respect to the timing, magnitude or duration of the response, or the overall abundance of the transcript. The statistical model makes an accommodation for systematic heterogeneity in expression levels. Corresponding data analyses provide gene-specific information, and the approach provides a means for evaluating the statistical significance of such information. To illustrate this strategy we have derived a model to depict the profile expected for a periodically transcribed gene and used it to look for budding yeast transcripts that adhere to this profile. Using objective criteria, this method identifies 81% of the known periodic transcripts and 1,088 genes, which show significant periodicity in at least one of the three data sets analyzed. However, only one-quarter of these genes show significant oscillations in at least two data sets and can be classified as periodic with high confidence. The method provides estimates of the mean activation and deactivation times, induced and basal expression levels, and statistical measures of the precision of these estimates for each periodic transcript.

Pitfalls in the Evaluation of the Thermodynamic Consistency of Experimental VLE Data Sets

The thermodynamic consistency of almost 90 VLE data series, including isothermal and isobaric conditions for systems of both total and partial miscibility in the liquid phase, has been examined by means of the area and point-to-point tests. In addition, the Gibbs energy of mixing function calculated from these experimental data has been inspected, with some rather surprising results: certain data sets exhibiting high dispersion or leading to Gibbs energy of mixing curves inconsistent with the total or partial miscibility of the liquid phase, surprisingly, pass the tests. Several possible inconsistencies in the tests themselves or in their application are discussed. Related to this is a very interesting and ambitious initiative that arose within the NIST organization: the development of an algorithm to assess the quality of experimental VLE data. The present paper questions the applicability of two of the five tests that are combined in the algorithm. It further shows that the deviation of the experimental VLE data from the correlation obtained by a given model, the basis of some point-to-point tests, should not be used to evaluate the quality of these data.

Testing the validity of the lognormal probability model : computer analysis of carbon monoxide data from U.S. cities /

Mode of access: Internet.

Analysis of subpoenaed television data /

March 1978.

Empirical analysis of critical mass data involving enriched uranium metal in water /

"Unclassified"--Cover.

Computer program to perform Fourier analysis of x-ray data /

"U.S. Atomic Energy Commission Contract AT(29-1)-1106."

Senior citizens and how they live: an analysis of 1960 census data. [Report prepared by the Statistical Reports Staff] Office of Program Policy.

Mode of access: Internet.

Osiris III; an integrated collection of computer programs for the management and analysis of social science data.

v. 1. System and program description.--v. 2. Error Messages.--v. 3. Summary of control cards.--v. 4. Sample jobs.--v. 5. Formulas and statistical references.--v. 6. Primer.

Effects of filter response on analysis of aircraft noise data /

Mode of access: Internet.

Farm real-estate valuations in Illinois with special reference to township averages : an analysis of 1930 Census data and supplementary information for previous and subsequent dates /

Cover title.

An analysis of aircraft accident data, U.S. general aviation /

Mode of access: Internet.