Methods and strategies to identify the mode of action of phytoactive compounds

Small molecules affecting biological processes in plants are widely used in agricultural practice as herbicides or plant growth regulators and in basic plant sciences as probes to study the physiology of plants. Most of the compounds were identified in large screens by the agrochemical industry, as phytoactive natural products and more recently, novel phytoactive compounds originated from academic research by chemical screens performed to induce specific phenotypes of interest. The aim of the present PhD thesis is to evaluate different approaches used for the identification of the primary mode of action (MoA) of a phytoactive compound. Based on the methodologies used for MoA identification, three approaches are discerned: a phenotyping approach, an approach based on a genetic screen and a biochemical screening approach.rnFour scientific publications resulting from my work are presented as examples of how a phenotyping approach can successfully be applied to describe the plant MoA of different compounds in detail.rnI. A subgroup of cyanoacrylates has been discovered as plant growth inhibitors. A set of bioassays indicated a specific effect on cell division. Cytological investigations of the cell division process in plant cell cultures, studies of microtubule assembly with green fluorescent protein marker lines in vivo and cross resistant studies with Eleusine indica plants harbouring a mutation in alpha-tubulin, led to the description of alpha-tubulin as a target site of cyanoacrylates (Tresch et al., 2005).rnII. The MoA of the herbicide flamprop-m-methyl was not known so far. The studies described in Tresch et al. (2008) indicate a primary effect on cell division. Detailed studies unravelled a specific effect on mitotic microtubule figures, causing a block in cell division. In contrast to other inhibitors of microtubule rearrangement such as dinitroanilines, flamprop-m-methyl did not influence microtubule assembly in vitro. An influence of flamprop-m-methyl on a target within the cytoskeleton signalling network could be proposed (Tresch et al., 2008).rnIII. The herbicide endothall is a protein phosphatase inhibitor structurally related to the natural product cantharidin. Bioassay studies indicated a dominant effect on dark-growing cells that was unrelated to effects observed in the light. Cytological characterisation of the microtubule cytoskeleton in corn tissue and heterotrophic tobacco cells showed a specific effect of endothall on mitotic spindle formation and ultrastructure of the nucleus in combination with a decrease of the proliferation index. The observed effects are similar to those of other protein phosphatase inhibitors such as cantharidin and the structurally different okadaic acid. Additionally, the observed effects show similarities to knock-out lines of the TON1 pathway, a protein phosphatase-regulated signalling pathway. The data presented in Tresch et al. (2011) associate endothall’s known in vitro inhibition of protein phosphatases with in vivo-effects and suggest an interaction between endothall and the TON1 pathway.rnIV. Mefluidide as a plant growth regulator induces growth retardation and a specific phenotype indicating an inhibition of fatty acid biosynthesis. A test of the cuticle functionality suggested a defect in the biosynthesis of very-long-chain fatty acids (VLCFA) or waxes. Metabolic profiling studies showed similarities with different groups of VLCFA synthesis inhibitors. Detailed analyses of VLCFA composition in tissues of duckweed (Lemna paucicostata) indicated a specific inhibition of the known herbicide target 3 ketoacyl-CoA synthase (KCS). Inhibitor studies using a yeast expression system established for plant KCS proteins verified the potency of mefluidide as an inhibitor of plant KCS enzymes. It could be shown that the strength of inhibition varied for different KCS homologues. The Arabidopsis Cer6 protein, which induces a plant growth phenotype similar to mefluidide when knocked out, was one of the most sensitive KCS enzymes (Tresch et al., 2012).rnThe findings of my own work were combined with other publications reporting a successful identification of the MoA and primary target proteins of different compounds or compound classes.rnA revised three-tier approach for the MoA identification of phytoactive compounds is proposed. The approach consists of a 1st level aiming to address compound stability, uniformity of effects in different species, general cytotoxicity and the effect on common processes like transcription and translation. Based on these findings advanced studies can be defined to start the 2nd level of MoA characterisation, either with further phenotypic characterisation, starting a genetic screen or establishing a biochemical screen. At the 3rd level, enzyme assays or protein affinity studies should show the activity of the compound on the hypothesized target and should associate the in vitro effects with the in vivo profile of the compound.

Effects of management on native and exotic plant communities in Pictured Rocks National Lakeshore in the Upper Peninsula of Michigan

Ecological disturbances may be caused by a range of biotic and abiotic factors. Among these are disturbances that result from human activities such as the introduction of exotic plants and land management activities. This dissertation addresses both of these types of disturbance in ecosystems in the Upper Peninsula of Michigan. Invasive plants are a significant cause of disturbance at Pictured Rocks Natural Lakeshore. Management of invasive plants is dependent on understanding what areas are at risk of being invaded, what the consequences of an invasion are on native plant communities and how effective different tools are for managing the invasive species. A series of risk models are described that predict three stages of invasion (introduction, establishment and spread) for eight invasive plant species at Pictured Rocks National Lakeshore. These models are specific to this location and include species for which models have not previously been produced. The models were tested by collecting point data throughout the park to demonstrate their effectiveness for future detection of invasive plants in the park. Work to describe the impacts and management of invasive plants focused on spotted knapweed in the sensitive Grand Sable Dunes area of Pictured Rocks National Lakeshore. Impacts of spotted knapweed were assessed by comparing vegetation communities in areas with varying amounts of spotted knapweed. This work showed significant increases in species diversity in areas invaded by knapweed, apparently as a result of the presence of a number of non-dune species that have become established in spotted knapweed invaded areas. An experiment was carried out to compare annual spot application of two herbicides, Milestone® and Transline® to target spotted knapweed. This included an assessment of impacts of this type of treatment on non-target species. There was no difference in the effectiveness of the two herbicides, and both significantly reduced the density of spotted knapweed during the course of the study. Areas treated with herbicide developed a higher percent cover of grasses during the study, and suffered limited negative impacts on some sensitive dune species such as beach pea and dune stitchwort, and on some other non-dune species such as hawkweed. The use of these herbicides to reduce the density of spotted knapweed appears to be feasible over large scales.

INTEGRATED MANAGEMENT OF THE INVASIVE SPECIES CIRSIUM ARVENSE, CANADA THISTLE, AND PHRAGMITES AUSTRALIS, COMMON REED: USING ECOLOGICALLY BASED CONTROL MEASURES AT EACH STAGE OF THE INVASION PROCESS

Invasive plant species threaten natural areas by reducing biodiversity and altering ecosystem functions. They also impact agriculture by reducing crop and livestock productivity. Millions of dollars are spent on invasive species control each year, and traditionally, herbicides are used to manage invasive species. Herbicides have human and environmental health risks associated with them; therefore, it is essential that land managers and stakeholders attempt to reduce these risks by utilizing the principles of integrated weed management. Integrated weed management is a practice that incorporates a variety of measures and focuses on the ecology of the invasive plant to manage it. Roadways are high risk areas that have high incidence of invasive species. Roadways act as conduits for invasive species spread and are ideal harborages for population growth; therefore, roadways should be a primary target for invasive species control. There are four stages in the invasion process which an invasive species must overcome: transport, establishment, spread, and impact. The aim of this dissertation was to focus on these four stages and examine the mechanisms underlying the progression from one stage to the next, while also developing integrated weed management strategies. The target species were Phragmites australis, common reed, and Cisrium arvense, Canada thistle. The transport and establishment risks of P. australis can be reduced by removing rhizome fragments from soil when roadside maintenance is performed. The establishment and spread of C. arvense can be reduced by planting particular resistant species, e.g. Heterotheca villosa, especially those that can reduce light transmittance to the soil. Finally, the spread and impact of C. arvense can be mitigated on roadsides through the use of the herbicide aminopyralid. The risks associated with herbicide drift produced by application equipment can be reduced by using the Wet-Blade herbicide application system.

EXPLORING CHANGES IN DETRITAL FLOCCULENT LAYER DYNAMICS DUE TO SHIFTS IN MACROPHYTE COMMUNITIES IN THE NORTHERN EVERGLADES

A shift in plant communities of the Water Conservation Areas (WCAs) within the Everglades has been linked to changes in hydrology and high levels of nutrient loading from surrounding agicultural areas. This has resulted in the encroachment of dense cattail stands (Typha domingensis) into areas that had previously been a ridge and slough landscape populated primarily by native sawgrass (Cladium jamaicense). In order to study ecological management solutions in this area, WCA-2A was broken into study plots; several of which became open water areas through the application of herbicide and burning regimens. The open water areas allowed for Chara spp (a submersed algal species) to replace Typha domingensis as the dominant macrophyte. This study investigated the polymer and ionic profiles of Chara spp, Typha domingensis and Cladium jamaicense and their contributions to detrital flocculent (floc) in the study plots where they are the dominant macrophytes. Floc is not only an important food source for aquatic species; it also supports many algal, fungal and bacterial communities. Data gathered in this study indicated that the floc sample from a phosphorus enriched open water study plot (EO1) where Chara spp was the dominant macrophyte may contain cell wall polymers from sources other than Chara spp (most likely Typha domingensis), while the chemical and polymeric profile of the floc of the study plot where Typha domingensis is the dominant macrophyte (EC1) suggests that the floc layer has contributions from algal sources as well as Typha domingensis. Additionally, monoclonal antibodies to Arabinoglalactan protein (AGP) and (1,4)-β-D galactan were identified as possible biomarkers for distinguishing algal dominated floc layers from layers dominated by emergent vegetation. Calcium labeling could be a useful tool for this as well because of the high amount of Ca2+ associated with Chara spp cell walls. When looking into the soluble phosphorus content of the macrophytes and paired floc samples of WCA-2A, it was found that Chara spp may be contributing a greater amount of Ca-bound phosphorus to floc layers where it is the dominant macrophyte when compared to floc layers from study plots dominated by emergent macrophytes. Floc layers also appear to be acting as a nutrient sink for soluble phosphorus. The findings of this study support the overall hypothesis that the shift from native emergent macrophyte communities to submersed macrophyte communities in study sites of the northern Everglades is affecting the polymeric/chemical profile and ionic content of detrital floc layers. The effects of this shift may contribute to changes in complex flocculent community dynamics.

Increasing the Glutathione Content in a Chilling-Sensitive Maize Genotype Using Safeners Increased Protection against Chilling-Induced Injury

With the aim of analyzing their protective function against chilling-induced injury, the pools of glutathione and its precursors, cysteine (Cys) and gamma -glutamyl-Cys, were increased in the chilling-sensitive maize (Zea mays) inbred line Penjalinan using a combination of two herbicide safeners. Compared with the controls, the greatest increase in the pool size of the three thiols was detected in the shoots and roots when both safeners were applied at a concentration of 5 muM. This combination increased the relative protection from chilling from 50% to 75%. It is interesting that this increase in the total glutathione (TG) level was accompanied by a rise in glutathione reductase (GR; EC 1.6.4.2) activity. When the most effective safener combination was applied simultaneously with increasing concentrations of buthionine sulfoximine, a specific inhibitor of glutathione synthesis, the total gamma -glutamyl-Cys and TG contents and GR activity were decreased to very low levels and relative protection was lowered from 75% to 44%. During chilling, the ratio of reduced to oxidized thiols first decreased independently of the treatments, but increased again to the initial value in safener-treated seedlings after 7 d at 5 degreesC. Taking all results together resulted in a linear relationship between TG and GR and a biphasic relationship between relative protection and GR or TG, thus demonstrating the relevance of the glutathione levels in protecting maize against chilling-induced injury.

Monitoring of industrial exposure for chloracne

This study (1) established comedogenicity dose response curves for the pure compounds of 3,3$\sp\prime$,4,4$\sp\prime$-tetrachloroazobenzene (TCAB) and 3,3$\sp\prime$,4,4$\sp\prime$-tetrachloroazoxybenzene (TCAOB) individually and as a couple-compound using a rabbit ear model; (2) used a rabbit ear model to establish comedogenicity potential for TCAB and TCAOB as they existed in a given industrial herbicide manufacture process; (3) evaluated actual environmental contamination in a herbicide industrial setting by air monitoring and wipe sampling; (4) biologically monitored potentially exposed workers for alterations in follicular orifice size as an index of actual exposure to chloracnegenic compounds; and (5) biologically monitored potentially exposed workers for changes in weight, cholesterol, triglycerides and blood sugar.^ A silastic monomer mold (an objective measure) was used to measure change in follicular orifice size over time. This required taking impressions of (1) skin of the forehead and right and left malar crescents of workers and (2) the skin of the external ear of the rabbit. Molds were stained using a solution of hematoxylin and digitized using a Nikon UFX microscope (magnification 300 X), a drawing tube and a digitizing tablet attached to an IBM Personal Computer. Comedogenicity assays were used to establish dose-response curves for TCAB, TCAOB and the couple-compound TCAB + TCAOB.^ No evidence of chloracne or toxicity was observed in any of the workers. Nor, was there a statistically significant increase in size of follicular orifice means measured over time. This was attributed to extensive personal and environmental hygiene programs along with teaching the workers about chloracne, its cause and its prevention. These programs may have been the greatest factor in preventing the development of chloracne in this group of workers. Monitoring of the plant environment showed relatively high concentrations of the couple-compound (TCAB + TCAOB). Comedogenicity assays showed a linear dose-response relationship over time for TCAB, TCAOB and the couple-compound. An antagonistic action was found for the TCAB/TCAOB of the couple-compound; such action may provide some protection to workers in this type of setting. It is speculated that the observed antagonistic action may be due to the difference in binding affinities of TCAB/TCAOB for receptor sites. ^

Microclima de la canopia de la vid : influencia del manejo del suelo y coberturas vegetales.

Para determinar la influencia del manejo del suelo sobre el microclima de la canopia se estableció un experimento en un viñedo de Cabernet Sauvignon conducido en doble cordón de pitones en espladero alto. Se aplicaron tres tratamientos: Testigo (TR)-suelo sin maleza; (CVP)-cobertura de suelo espontánea y control del desarrollo vegetativo por desbrozado y (CA)-cobertura de flora espontánea y control del desarrollo vegetativo con aplicación de herbicida de contacto desecante. Se midió la radiación fotosintéticamente activa (PAR), la composición espectral de la radiación directa y reflejada, y la temperatura a nivel de racimos en el interior de la canopia. El TR reflejó más radiación en la zona del UV y del visible. El CVP reflejó entre un 8 y 9%, el CA entre el 16 y 18% y el TR entre 18 y 19%. En la radiación reflejada, la relación rojo/rojo lejano fue mayor en CA y TR, mientras que la relación azul/rojo fue mayor en CVP. La temperatura en el interior de la canopia fue mayor en TR (30,8°C) que en CVP (26,7°C). La utilización de coberturas vegetales de raíces superficiales y permanentemente desbrozadas sería de utilidad para reducir la radiación reflejada y la temperatura de la canopia sin competir con el viñedo por agua y nutrimentos.

Influencia del manejo del suelo y las coberturas vegetales en el microclima de la canopia de la vid, la composición de la uva y el vino

Para determinar la influencia del manejo del suelo sobre la composición de la uva y el vino se estableció un experimento en un viñedo de Cabernet Sauvignon conducido en doble cordón de pitones en espaldero alto. Se aplicaron tres tratamientos: TR-suelo sin maleza; CVP-cobertura de suelo espontánea y control del desarrollo vegetativo por desbrozado y CA-cobertura de flora espontánea y control del desarrollo vegetativo con aplicación de herbicida de contacto desecante. En la uva se determinó el contenido de azúcar, acidez total, pH y la composición fenólica (índice de polifenoles totales (IPT), grado de polimerización, flavonoles, flavan-3-oles, antocianos y proantocianidoles). Se elaboraron vinos que fueron evaluados físico-química y sensorialmente por jueces expertos. CVP tuvo el mayor contenido de antocianas y TR el de flavonoles, flavan-3-oles, proantocianidoles, IPT y grado de polimerización; CA presentó valores intermedios. Los vinos del tratamiento TR tuvieron mayor contenido de alcohol y menor de acidez total, con el color rojo (DO520) más bajo y una intensidad colorante más pequeña. Los vinos de CA y TR resultaron más amargos, más astringentes y más ásperos, y los de CVP tuvieron mayor carácter varietal. Resultó útil el empleo de coberturas de raíces superficiales y permanentemente desbrozadas para provocar cierta disminución en los valores de radiación reflejada y de la temperatura de la canopia. Las elevadas temperaturas y alta radiación solar son perjudiciales para la uva, porque aumentan la producción de quercetina y afectan el metabolismo y la degradación de antocianos.

Estudio del empleo de cubiertas vegetales temporales para la regulación del régimen hídrico, crecimiento y manejo sostenible del viñedo

RESUMEN El ensayo se llevo a acabo en un viñedo de Syrah durante 8 años y en un viñedo de Merlot durante 3 años. Ambos viñedos regados y situados en Colmenar de Oreja (Madrid) (40º 8’N, 3º 23’W) con clima típicamente Mediterráneo. Siete tratamientos con cubiertas vegetales se han comparado con dos tratamientos con suelo desnudo usados como control. Las cubiertas vegetales fueron seis tratamientos de cereales (Centeno) y un tratamiento de enyerbado autosembrado (Bromus spp) y los tratamientos de suelo desnudo fueron uno manejado con laboreo y otro manejado con herbicida. Los seis tratamientos de centeno se han manejado de seis formas distintas. La primera sembrada todos los años y eliminada en brotación mediante herbicida de post-emergencia. La segunda sembrada todos los años y eliminada un mes después de la brotación mediante siega. La tercera sembrada todos los años y eliminada en floración mediante siega. La cuarta sembrada todos los años y eliminada en brotación mediante herbicida de post-emergencia. La quinta sembrada todos los años y eliminada un mes después de la brotación mediante siega. La sexta sembrada todos los años y eliminada en floración mediante siega. La utilización de cubiertas vegetales ha tenido efectos beneficiosos sobre el contenido en materia orgánica, la compactación y la infiltración del suelo, mejorando las condiciones para el desarrollo de las raíces. Estas mejoras y la escasa competencia de la competencia durante el crecimiento del sistema radical de la vid han producido un incremento del sistema radical en las plantas mantenidos con cubierta vegetal. La competencia de las cubiertas vegetales ha reducido la disponibilidad hídrica de la vid, incrementándose la absorción en zonas con mayor disponibilidad hídrica (como la línea) antes de floración. El mayor desarrollo radical de las vides con cubierta autosembrada ha permitido agotar más intensamente las reservas de agua en el suelo. La competencia de las cubiertas ha reducido en mayor medida el desarrollo vegetativo que el productivo. Lo que ha disminuido, en algunas cubiertas vegetales, el consumo hídrico de la vid, aumentando el potencial hídrico foliar y la fotosíntesis durante la maduración. Sin embargo, el incremento en la fotosíntesis no ha compensado el mayor desarrollo foliar de los tratamientos con suelo desnudo, lo que ha provocado que estos tratamientos presenten la producción de materia seca más elevada. El empleo de cubiertas vegetales ha reducido la producción principalmente limitando el número de bayas por racimo, ya que el aporte de riego ha minimizado los efectos del manejo del suelo sobre el tamaño de baya. La utilización de cubiertas vegetales temporales ha mejorado la iluminación de los racimos, lo que ha producido un aumento de la síntesis de antocianos durante las primeras fases de la maduración, pero un incremento de la degradación de los mismos al final de la maduración. Esto ha provocado que durante la vendimia los tratamientos de suelo desnudo presenten un mayor contenido de antocianos por baya que los tratamientos mantenidos con cubierta temporal. Estos resultados muestran que el efecto del manejo del suelo depende en gran medida de las condiciones del medio, y que sus efectos en climas calidos y secos son muy distintos a los observados en climas frescos y húmedos. ABSTRACT The trial was conducted over a period of 8 years in a Syrah vineyard and over a period of 3 years in a Merlot vineyard. Both vineyards were irrigated and situated near Colmenar de Oreja (Madrid) (40º 8’N, 3º 23’W) a typical Mediterranean climate. Seven Annual cover crops treatments were compared to two bare soil treatments, used as control. Cover crops were six cereals treatments (Rye) and one auto-sowing treatment (Bromus spp) and the treatments of bare soil were one tilled management treatment and another with herbicide treatment. The six Cereal treatments were managed in different manners. First sowing every year and were eliminated in bud breaking with post-emergency herbicide. The second sowing annually and were eliminated one month after bud breaking through harvesting. The third sowing annually and were eliminated in flowering by mowing. The fourth sowing annually and were eliminated with post-emergency herbicide in bud breaking. The fifth sowing annually and were eliminated by mowing one month after bud breaking. . The third sowing annually was eliminated by mowing in flowering. The use of annual cover crop have improved soil organic matter, soil infiltration rate and soil solidity, resulting in a more favourable environment for roots growth. These improvements and low competitive ability during root growing have increases grapevine root density in plant management with cover crop. The Cover crop ability reduced plant available water, increasing root water uptake in the soil with more available water (such us line) before flowering. More growth of grapevine root density with auto-sowed cover crops has allowed using the water under soil more rapidly. The cover crop ability has reduced vegetative growth more than yield. What has been reduced in some vegetative cover crop has been the consumption of water, and increasing the leaf water potential and foliar and photosynthesis during growth activity. Moreover, the increased in photosynthesis activity could not “Compensate” higher leaf growth of treatment of bare soil, where these treatments had resulted in the greatest amount of dry material. The use of cover crops has reduced the crop mainly reducing the fruit set, because the irrigation had reduced the cover crop effect in the berry growth. The use of temporary cover crop increased berry sunlight exposure and skin anthocyanin synthesis during early rippenig, but excessively high temperature increased anthocyanin degradation during last part of ripenning. So, at the vineyard harvest period the treatments with bare soil plant had a more anthocyanin content per grape than the temporary cover crop plant treatments. These results suggest that the effects of soil handling mainly depends on the environmental condition, and their effects in hot and dry climate are so different from the effects in cold and moist climates.

A computer vision approach for weeds identification through Support Vector Machines

This paper outlines an automatic computervision system for the identification of avena sterilis which is a special weed seed growing in cereal crops. The final goal is to reduce the quantity of herbicide to be sprayed as an important and necessary step for precision agriculture. So, only areas where the presence of weeds is important should be sprayed. The main problems for the identification of this kind of weed are its similar spectral signature with respect the crops and also its irregular distribution in the field. It has been designed a new strategy involving two processes: image segmentation and decision making. The image segmentation combines basic suitable image processing techniques in order to extract cells from the image as the low level units. Each cell is described by two area-based attributes measuring the relations among the crops and weeds. The decision making is based on the SupportVectorMachines and determines if a cell must be sprayed. The main findings of this paper are reflected in the combination of the segmentation and the SupportVectorMachines decision processes. Another important contribution of this approach is the minimum requirements of the system in terms of memory and computation power if compared with other previous works. The performance of the method is illustrated by comparative analysis against some existing strategies.

Utilización del cultivo plurianual de pataca (Helianthus tuberosus L.) para la producción de hidratos de carbono fermentables a partir de los tallos

La pataca (Helianthus tuberosus L.) es una especie de cultivo con un alto potencial en la producción de hidratos de carbono de reserva en forma de polifructanos, especialmente inulina, que se acumulan temporalmente en los tallos en forma de polisacáridos para translocarse posteriormente a los tubérculos, donde son almacenados. Aunque tradicionalmente el producto de interés del cultivo son los tubérculos, que acumulan gran cantidad de hidratos de carbono fermentables (HCF) cuando se recogen al final del ciclo de desarrollo, en este trabajo se pretende evaluar el potencial de la pataca como productor de HCF a partir de los tallos cosechados en el momento de máximo contenido en HCF, mediante un sistema de cultivo plurianual. Se han realizado los siguientes estudios: i) Determinación del momento óptimo de cosecha en ensayos con 12 clones ii) Potencial del cultivo plurianual de la pataca en términos de producción anual de biomasa aérea y de HCF en cosechas sucesivas, iii) Ensayos de conservación de la biomasa aérea, iv) Estimación de los costes de las dos modalidades de cultivo de pataca para producción de HCF y v) Estimación de la sostenibilidad energética de la producción de bioetanol mediante la utilización de los subproductos. Para la determinación del momento óptimo de la cosecha de la biomasa aérea se ensayaron 12 clones de diferente precocidad en Madrid; 4 tempranos (Huertos de Moya, C-17, Columbia y D-19) y 8 tardíos (Boniches, China, K-8, Salmantina, Nahodka, C-13, INIA y Violeta de Rennes). El máximo contenido en HCF tuvo lugar en el estado fenológico de botón floral-flor que además coincidió con la máxima producción de biomasa aérea. De acuerdo con los resultados obtenidos, la cosecha de los clones tempranos se debería realizar en el mes de julio y en los clones tardíos en septiembre, siendo éstos últimos más productivos. La producción media más representativa entre los 12 clones, obtenida en el estado fenológico de botón floral fue de 23,40 t ms/ha (clon INIA), con un contenido medio en HCF de 30,30 % lo que supondría una producción potencial media de 7,06 t HCF/ha. La producción máxima en HCF se obtuvo en el clon Boniches con 7,61 t/ha y 22,81 t ms/ha de biomasa aérea. En el sistema de cultivo plurianual la cantidad de tallos por unidad de superficie aumenta cada año debido a la cantidad de tubérculos que van quedando en el terreno, sobre todo a partir del 3er año, lo que produce la disminución del peso unitario de los tallos, con el consiguiente riesgo de encamado. El aclareo de los tallos nacidos a principios de primavera mediante herbicidas tipo Glifosato o mediante una labor de rotocultor rebaja la densidad final de tallos y mejora los rendimientos del cultivo. En las experiencias de conservación de la biomasa aérea se obtuvo una buena conservación por un período de 6 meses de los HCF contenidos en los tallos secos empacados y almacenados bajo cubierta. Considerando que el rendimiento práctico de la fermentación alcohólica es de 0,5 l de etanol por cada kg de azúcar, la producción potencial de etanol para una cosecha de tallos de 7,06 t de HCF/ha sería de 3.530 l/ha. El bagazo producido en la extracción de los HCF de la biomasa aérea supondría 11,91 t/ha lo que utilizado para fines térmicos supone más de 3 veces la energía primaria requerida en el proceso de producción de etanol, considerando un poder calorífico inferior de 3.832,6 kcal/kg. Para una producción de HCF a partir de la biomasa aérea de 7,06 t/ha y en tubérculos al final del ciclo de 12,11 t/ha, los costes de producción estimados para cada uno de ellos fueron de 184,69 €/t para los HCF procedentes de la biomasa aérea y 311,30 €/t para los de tubérculos. Como resultado de este trabajo se puede concluir que la producción de HCF a partir de la biomasa aérea de pataca en cultivo plurianual, es viable desde un punto de vista técnico, con reducción de los costes de producción respecto al sistema tradicional de cosecha de tubérculos. Entre las ventajas técnicas de esta modalidad de cultivo, cabe destacar: la reducción de operaciones de cultivo, la facilidad y menor coste de la cosecha, y la posibilidad de conservación de los HCF en la biomasa cosechada sin mermas durante varios meses. Estas ventajas, compensan con creces el menor rendimiento por unidad de superficie que se obtiene con este sistema de cultivo frente al de cosecha de los tubérculos. Jerusalem artichoke (Helianthus tuberosus L.) (JA) is a crop with a high potential for the production of carbohydrates in the form of polyfructans, especially inulin, which are temporarily accumulated in the stems in the form of polysaccharides. Subsequently they are translocated to the tubers, where they are finally accumulated. In this work the potential of Jerusalem artichoke for fermentable carbohydrates from stems that are harvested at their peak of carbohydrates accumulation is assessed as compared to the traditional cultivation system that aims at the production of tubers harvested at the end of the growth cycle. Tubers are storage organs of polyfructans, namely fermentable carbohydrates. Studies addressed in this work were: i) Determination of the optimum period of time for stem harvesting as a function of clone precocity in a 12-clone field experiment; ii) Study of the potential of JA poly-annual crop regarding the annual yield of aerial biomass and fermentable carbohydrates (HCF) over the years; iii) Tests of storage of the aerial biomass, iv) Comparative analysis of the two JA cultivation systems for HCF production: the poly-annual system for aerial biomass harvesting versus the annual cultivation system for tubers and v) Estimation of the energy sustainability of the bioethanol production by using by-products of the production chain. In order to determine the best period of time for aerial biomass harvesting twelve JA clones of different precocity were tested in Madrid: four early clones (Huertos de Moya, C-17, Columbia and D-19) and eight late clones (Boniches, China, K-8 , Salmantina, Nahodka, C-13, INIA and Violeta de Rennes). Best time was between the phenological stages of floral buds (closed capitula) and blossom (opened capitula), period in which the peak of biomass production coincides with the peak of HCF accumulation in the stems. According to the results, the early clones should be harvested in July and the late ones in September, being the late clones more productive. The clone named INIA was the one that exhibited more steady yields in biomass over the 12 clones experimented. The average potential biomass production of this clone was 23.40 t dm/ha when harvested at the floral buds phenological stage; mean HCF content is 30.30%, representing 7.06 t HCF/ha yield. However, the highest HCF production was obtained for the clone Boniches, 7.61 t HCF/ha from a production of 22.81 t aerial biomass/ha. In the poly-annual cultivation system the number of stems per unit area increases over the years due to the increase in the number of tubers that are left under ground; this effect is particularly important after the 3rd year of the poly-annual crop and results in a decrease of the stems unit weight and a risk of lodging. Thinning of JA shoots in early spring, by means of an herbicide treatment based on glyphosate or by means of one pass with a rotary tiller, results in a decrease of the crop stem density and in higher crop yields. Tests of biomass storing showed that the method of keeping dried stems packed and stored under cover results in a good preservation of HCF for a period of six months at least. Assuming that the fermentation yield is 0.5 L ethanol per kg sugars and a HCF stem production of 7.06 t HCF/ha, the potential for bioethanol is estimated at 3530 L/ha. The use of bagasse -by-product of the process of HCF extraction from the JA stems- for thermal purposes would represent over 3 times the primary energy required for the industrial ethanol production process, assuming 11.91 t/ha bagasse and 3832.6 kcal/kg heating value. HCF production costs of 7.06 t HCF/ha yield from aerial biomass and HCF production costs of 12.11 t HCF/ha from tubers were estimated at 184.69 €/t HCF and 311.30 €/t HCF, respectively. It can be concluded that the production of HCF from JA stems, following a poly-annual cultivation system, can be feasible from a technical standpoint and lead to lower production costs as compared to the traditional annual cultivation system for the production of HCF from tubers. Among the technical advantages of the poly-annual cultivation system it is worth mentioning the reduction in crop operations, the ease and efficiency of harvesting operations and the possibility of HCF preservation without incurring in HCF losses during the storage period, which can last several months. These advantages might compensate the lower yield of HCF per unit area that is obtained in the poly-annual crop system, which aims at stems harvesting, versus the annual one, which involves tubers harvesting.

Even-sowing pattern strategies for a low-input agricultural system in forage maize

The objective of this study was to verify the effectiveness of new patterns of sowing and to achieve a low-input organic system in two different environments (northern and southern Europe). The study was motivated by the hypothesis that more even sowing patterns (triangular and square) would significantly enhance the growth and yield of forage maize under widely varying conditions, compared with traditional mechanised rectangular seed patterns. An experiment was conducted in Madrid and duplicated in Copenhagen during 2010. A random block design was used with a 2 × 2 factorial arrangement based on two seed-sowing patterns: traditional (rectangular) and new (even) and two weed-management conditions (herbicide use and a low-input system). In both weed-management conditions and locations, the production of aerial maize biomass was greater for the new square seed patterns. In addition, the new pattern showed a greater effectiveness in the control of weeds, both at the initial crop stages (36 and 33% fewer weeds m-2 at the 4- and 8-leaf stages, respectively, in the Copenhagen field experiment) and at the final stage. The final weed biomass for the new pattern was 568 kg ha-1 lower for the Copenhagen experiment and 277 kg ha-1 lower in Madrid field experiments. In the light of these results, the new pattern could potentially reduce the use of herbicides. The results of the experiments support the hypothesis formulated at the beginning of this study that even-sowing patterns would be relatively favourable for the growth and yield of the maize crop. In the near future, new machinery could be used to achieve new seed patterns for the optimisation of biomass yield under low-input systems. This approach is effective because it promotes natural crop-weed competition.

Discriminating Crop, Weeds and Soil Surface with a Terrestrial LIDAR Sensor

In this study, the evaluation of the accuracy and performance of a light detection and ranging (LIDAR) sensor for vegetation using distance and reflection measurements aiming to detect and discriminate maize plants and weeds from soil surface was done. The study continues a previous work carried out in a maize field in Spain with a LIDAR sensor using exclusively one index, the height profile. The current system uses a combination of the two mentioned indexes. The experiment was carried out in a maize field at growth stage 12–14, at 16 different locations selected to represent the widest possible density of three weeds: Echinochloa crus-galli (L.) P.Beauv., Lamium purpureum L., Galium aparine L.and Veronica persica Poir.. A terrestrial LIDAR sensor was mounted on a tripod pointing to the inter-row area, with its horizontal axis and the field of view pointing vertically downwards to the ground, scanning a vertical plane with the potential presence of vegetation. Immediately after the LIDAR data acquisition (distances and reflection measurements), actual heights of plants were estimated using an appropriate methodology. For that purpose, digital images were taken of each sampled area. Data showed a high correlation between LIDAR measured height and actual plant heights (R 2 = 0.75). Binary logistic regression between weed presence/absence and the sensor readings (LIDAR height and reflection values) was used to validate the accuracy of the sensor. This permitted the discrimination of vegetation from the ground with an accuracy of up to 95%. In addition, a Canonical Discrimination Analysis (CDA) was able to discriminate mostly between soil and vegetation and, to a far lesser extent, between crop and weeds. The studied methodology arises as a good system for weed detection, which in combination with other principles, such as vision-based technologies, could improve the efficiency and accuracy of herbicide spraying.

Effects of soil management in vineyard on soil physical and chemical characteristics

Cover crops in Mediterranean vineyards are scarcely used due to water competition between the cover crop and the grapevine; however, bare soil management through tillage or herbicides tends to have negative effects on the soil over time (organic matter decrease, soil structure and soil fertility degradation, compaction, etc). The objective of this study was to understand how soil management affects soil fertility, compaction and infiltration over time. To this end, two bare soil techniques were compared, tillage (TT) and total herbicide (HT) with two cover crops; annual cereal (CT) and annual grass (AGT), established for 8 years. CT treatment showed the highest organic matter content, having the biggest amount of biomass incorporated into the soil. The annual adventitious vegetation in TT treatment (568 kg dry matter ha-1) that was incorporated into the soil, kept the organic matter content higher than HT levels and close to AGT level, in spite of the greater aboveground annual biomass production of this treatment (3632 kg dry matter ha-1) whereas only its roots were incorporated into the soil. TT presented the highest bulk density under the tractor track lines and a greatest resistance to penetration (at 0.2 m depth). AGT presented bulk density values (upper 0.4 m) lower than TT and penetration resistance in CT lower (at 0.20 m depth) than TT too. Effects of soil management in vineyard on soil physical and chemical characteristics - ResearchGate. Available from: http://www.researchgate.net/publication/268520480_Effects_of_soil_management_in_vineyard_on_soil_physical_and_chemical_characteristics [accessed May 20, 2015].

Evaluación de tecnologías de manejo de arvenses en el cultivo de la caña de azúcar (Saccharum spp. híbrido)

En Cuba, las arvenses que afectan al cultivo de la caña de azúcar son una de las causas fundamentales de los bajos rendimientos agrícolas y su control constituye unas de las principales partidas de gastos. En general, se aplican los herbicidas, así como otros métodos de control, sin tener en cuenta el tipo de suelo y las características de estas plantas. Sobre el manejo de arvenses no existen trabajos de investigación que aborden aspectos de eficiencia energética de las producciones y daños al ambiente. Por lo antes señalado, el objetivo de esta investigación fue evaluar diversas tecnologías de manejo de arvenses en el cultivo de la caña de azúcar (Saccharum spp. híbrido), en cepas de primavera y retoño, en tres tipos de suelos, con el propósito de obtener producciones sustentables. El área de estudio se localizó en los campos de la Empresa Azucarera del municipio “Majibacoa”, provincia de Las Tunas (oriente de Cuba), que posee condiciones edafoclimáticas que abundan a lo largo del país. Los tres tipos de suelos más representativos son Fersialítico Pardo Rojizo ócrico, Pardo Mullido y Vertisol Crómico gléyco. En dicha área se han identificado 31 especies de arvenses, 16 de la clase Liliopsida y 15 de la Magnoliopsida. En un primer grupo de experimentos, se desarrollaron nueve ensayos de campo para evaluar la efectividad de herbicidas y mezclas de estos en el manejo de arvenses en el cultivo de la caña de azúcar, tanto en cepas de primavera como de retoño, en los tres tipos de suelos. Se establecieron parcelas de 80 m2 distribuidas en bloques al azar con cuatro réplicas. La efectividad se evaluó por medio del porcentaje de cobertura por arvenses y la fitotoxicidad provocada a las plantas de caña, teniendo en cuenta el coste asociado a cada tratamiento. En aplicaciones preemergentes en caña planta de primavera, el herbicida más eficiente fue el Isoxaflutole con dosis de 0,15; 0,20 y 0,25 kg.ha-1 de producto comercial (pc) en los suelos Fersialítico, Pardo y Vertisol respectivamente. En aplicaciones postemergentes tempranas la mezcla más eficiente fue la de Isoxaflutole + Ametrina +2,4-D con las dosis de Isoxaflutole citadas anteriormente. En aplicaciones preemergentes en cepa de retoño, el herbicida más eficiente fue el Isoxaflutole a dosis de 0,20 kg.ha-1 pc para el suelo Fersialítico y a 0,25 kg.ha-1 pc para los suelos Pardo y Vertisol. En un segundo grupo, se realizaron seis ensayos de campo distribuidos en dos fases. En la primera fase, se desarrollaron tres experimentos, uno por cada tipo de suelo, para evaluar la eficiencia de nueve tecnologías de manejo de arvenses (químicas y físicas combinadas) en cepa de primavera de caña de azúcar. En la siguiente fase, los tres ensayos restantes (uno por tipo de suelo) evaluaron tecnologías de manejo de arvenses durante dos ciclos de producción de caña de azúcar (etapa de primavera y retoño). En la etapa de primavera se aplicó la tecnología más eficiente de los tres experimentos anteriores y durante la etapa de retoño se evaluaron otras nueve tecnologías propias de este tipo de cepa. En estos experimentos los diferentes tratamientos se aplicaron en franjas distribuidas al azar con cuatro réplicas. En las tecnologías evaluadas se emplearon los herbicidas y mezclas que resultaron más eficientes en el primer grupo de experimentos. En cada caso, se evaluaron la eficiencia energética de la producción de azúcar y otros derivados, la resistencia a la penetración de los suelos, la carga contaminante hacia la atmósfera producto de la combustión del diésel y los beneficios al aplicar las diferentes tecnologías. En la primera fase (cepa de primavera), la tecnología con mejor resultado fue la aplicación preemergente de Isoxaflutole inmediatamente después de la plantación, seguida de descepe químico con Glufosinato de amonio, más labor con grada múltiple aproximadamente a los 80 días de la plantación y aplicación pre-cierre con Glufosinato de amonio. En la segunda fase (dos ciclos del cultivo), el mejor resultado se obtuvo cuando en la etapa de retoño se realizó una aplicación preemergente de Isoxaflutole, descepe químico con Glufosinato de amonio y aplicación pre-cierre con este mismo herbicida. En los tres tipos de suelos durante los dos ciclos, la eficiencia energética tuvo valores de 7,2 - 7,5, la resistencia a la penetración 1,2 - 1,5 MPa, la carga contaminante hacia la atmósfera fue de 63,3 - 64,9 kg.t-1 de caña cosechada y beneficios de 8.324 - 8.455 pesos cubanos por hectárea. Este estudio demuestra que un control eficiente de las arvenses debe tener en cuenta necesariamente el tipo de suelo. Así, en los Vertisoles, con mayor contenido en arcilla, se requieren mayores dosis de Isoxaflutole y la eficiencia energética de la producción es menor. La persistencia de ciertas arvenses, especialmente de la clase Liliopsida, requiere de un manejo integrado que incluya diferentes tipos de herbicidas. ABSTRACT In Cuba, weeds affecting the sugarcane are one of the main causes of low agricultural yields, and their control constitutes some of the main items of expenditure. In general, herbicides are applied, as well as other control methods, without keeping in mind the soil type and the characteristics of these plants. Moreover, weed control research approaching aspects about energy efficiency of the crop production, and environmental damages are missing. Hence, the objective of this investigation was to evaluate diverse technologies of weed handling in sugarcane (Saccharum spp. hybrid), both in spring cane plant and ratoon, in three types of soils, with the purpose of obtaining sustainable productions. The study area was located in the fields of the Sugar Enterprise of the Municipality "Majibacoa”, Las Tunas province (east of Cuba) that possesses ecological conditions that are plentiful along the country. The three more representative types of soils are Fersialitic, Brown, and Vertisol. In this area 31 weeds species have been identified, 16 of the Class Liliopsida and 15 of the Magnoliopsida. In a first group of experiments, nine field rehearsals were developed to evaluate the effectiveness of herbicides and mixtures of these for weed handling in sugarcane, in spring cane plants as well as in ratoon, in the three types of soils. Plots of 80 m-2 were distributed at random blocks with four replications. The effectiveness was evaluated by means of the covering percentage by weeds and the provoked toxicity to the cane plants, keeping in mind the cost associated to each treatment. In preemergence applications in spring cane plant, the most efficient herbicide was the Isoxaflutole with dose of 0.15; 0.20 and 0.25 kg.ha-1 of commercial product (pc) in the soils Fersialítico, Brown and Vertisol respectively. In early postemergence applications the most efficient mixture was that of Isoxaflutole + Ametrina + 2,4-D with the doses of Isoxaflutole mentioned previously. In preemergence applications in ratoon, the most efficient herbicide was the Isoxaflutole at dose of 0.20 kg.ha-1 pc for the soil Fersialític and to 0.25 kg. ha-1 pc for the Brown soil and Vertisol. In a second group, six field rehearsals distributed in two phases were carried out. In the first phase, three experiments were developed, one for each soil type, to evaluate the efficiency of nine technologies of weed handling in spring cane plant. In the following phase, the three remaining rehearsals (one for each soil type) diverse technologies of weed handling were evaluated during two cycles of sugarcane production (spring stage and ratoon). In the spring stage the most efficient technology in the three previous experiments was applied and during ratoon stage other nine technologies were evaluated. In these experiments the different treatments were applied in fringes distributed at random with four replicas. In the evaluated technologies the herbicides and mixtures were used selecting those that were more efficient in the first group of experiments. In each case, the energy efficiency of the sugar production and other derivatives, the soil penetration resistance, the polluting load toward the atmosphere product of the combustion, and the benefits when applying the different technologies were all evaluated. In the first phase (spring cane plant), the technology with better result was the preemergence application of Isoxaflutole immediately after the plantation, followed by chemical eradication with Ammonia Glufosinate, hoeing work with multiple tier approximately to the 80 days of the plantation and pre-closing application with Ammonia Glufosinate. In the second phase (two cycles of the cultivation), the best result was obtained when a preemergence application of Isoxaflutole was carried out in sprout's stage, chemical eradication with Ammonia Glufosinate and pre-closing application with this same herbicide. In the three types of soils during the two cycles, the energy efficiency achieved values of 7.2 to 7.5, the resistance to the penetration 1.2 - 1.5 MPa, the polluting load toward the atmosphere was of 63.3 - 64.9 kg.t-1 of the harvested cane and the obtained benefits of 8,324 - 8,455 Cuban pesos per hectare. This study demonstrates that an efficient control of the weeds should necessarily keep in mind the soil type. This way, in the Vertisols, with more clay content, bigger dose of Isoxaflutole is required and the energy efficiency of the production is smaller. The persistence of certain weeds, especially of the class Liliopsida, requires of an integrated handling him to include different types of herbicides.