Coral reef ecosystems of Reserva Natural de La Parguera (Puerto Rico): spatial and temporal patterns in fish and benthic communities (2001-2007)

Since 1999, NOAA’s Center for Coastal Monitoring and Assessment, Biogeography Branch (CCMA-BB) has been working with federal and territorial partners to characterize monitor and assess the status of the marine environment in southwestern Puerto Rico. This effort is part of the broader NOAA Coral Reef Conservation Program’s (CRCP) National Coral Reef Ecosystem Monitoring Program (NCREMP). With support from CRCP’s NCREMP, CCMA conducts the “Caribbean Coral Reef Ecosystem Monitoring project” (CREM) with goals to: (1) spatially characterize and monitor the distribution, abundance and size of marine fauna associated with shallow water coral reef seascapes (mosaics of coral reefs, seagrasses, sand and mangroves); (2) relate this information to in situ fine-scale habitat data and the spatial distribution and diversity of habitat types using benthic habitat maps; (3) use this information to establish the knowledge base necessary for enacting management decisions in a spatial setting; (4) establish the efficacy of those management decisions; and (5) develop data collection and data management protocols. The monitoring effort of the La Parguera region in southwestern Puerto Rico was conducted through partnerships with the University of Puerto Rico (UPR) and the Puerto Rico Department of Natural and Environmental Resources (DNER). Project funding was primarily provided by NOAA CRCP and CCMA. In recent decades, scientific and non-scientific observations have indicated that the structure and function of the coral reef ecosystem in the La Parguera region have been adversely impacted by a wide range of environmental stressors. The major stressors have included the mass Diadema die off in the early 1980s, a suite of hurricanes, overfishing, mass mortality of Acropora corals due to disease and several coral bleaching events, with the most severe mass bleaching episode in 2005. The area is also an important recreational resource supporting boating, snorkeling, diving and other water based activities. With so many potential threats to the marine ecosystem several activities are underway or have been implemented to manage the marine resources. These efforts have been supported by the CREM project by identifying marine fauna and their spatial distributions and temporal dynamics. This provides ecologically meaningful data to assess ecosystem condition, support decision making in spatial planning (including the evaluation of efficacy of current management strategies) and determine future information needs. The ultimate goal of the work is to better understand the coral reef ecosystems and to provide information toward protecting and enhancing coral reef ecosystems for the benefit of the system itself and to sustain the many goods and services that it offers society. This Technical Memorandum contains analysis of the first seven years of fish survey data (2001-2007) and associated characterization of the benthos. The primary objectives were to quantify changes in fish species and assemblage diversity, abundance, biomass and size structure and to provide spatially explicit information on the distribution of key species or groups of species and to compare community structure across the seascape including fringing mangroves, inner, middle, and outer reef areas, and open ocean shelf bank areas.

Scientific assessment of hypoxia in U.S. coastal waters

The occurrence of hypoxia, or low dissolved oxygen, is increasing in coastal waters worldwide and represents a significant threat to the health and economy of our Nation’s coasts and Great Lakes. This trend is exemplified most dramatically off the coast of Louisiana and Texas, where the second largest eutrophication-related hypoxic zone in the world is associated with the nutrient pollutant load discharged by the Mississippi and Atchafalaya Rivers. Aquatic organisms require adequate dissolved oxygen to survive. The term “dead zone” is often used in reference to the absence of life (other than bacteria) from habitats that are devoid of oxygen. The inability to escape low oxygen areas makes immobile species, such as oysters and mussels, particularly vulnerable to hypoxia. These organisms can become stressed and may die due to hypoxia, resulting in significant impacts on marine food webs and the economy. Mobile organisms can flee the affected area when dissolved oxygen becomes too low. Nevertheless, fish kills can result from hypoxia, especially when the concentration of dissolved oxygen drops rapidly. New research is clarifying when hypoxia will cause fish kills as opposed to triggering avoidance behavior by fish. Further, new studies are better illustrating how habitat loss associated with hypoxia avoidance can impose ecological and economic costs, such as reduced growth in commercially harvested species and loss of biodiversity, habitat, and biomass. Transient or “diel-cycling” hypoxia, where conditions cycle from supersaturation of oxygen late in the afternoon to hypoxia or anoxia near dawn, most often occurs in shallow, eutrophic systems (e.g., nursery ground habitats) and may have pervasive impacts on living resources because of both its location and frequency of occurrence.

Cruise report: summer 2009 Sapelo Island National Estuarine Research Reserve ecological characterization (June 7 - June 13, 2009)

This cruise report is a summary of a field survey conducted within the Sapelo Island National Estuarine Research Reserve (SINERR), located on the Georgia coastline, June 7 – June 13, 2009. Multiple indicators of ecological condition and human dimensions were sampled synoptically at each of 30 stations throughout SINERR using a random probabilistic sampling design. Samples were collected for the analysis of benthic community structure and composition; concentrations of chemical contaminants (metals, pesticides, PAHs, PCBs, PBDEs) in sediments and target demersal biota; nutrient and chlorophyll levels in the water column; bacterial contaminants in the water column; and other basic habitat characteristics such as depth, salinity, temperature, dissolved oxygen, turbidity, total suspended solids, pH, sediment grain size, and organic carbon content. In addition to the fish samples that were collected for analysis of chemical contaminants relative to human-health consumption limits, other human-dimension indicators were sampled as well including presence or absence of fishing gear, vessels, surface trash, and noxious sediment odors. The overall purpose of the survey was to collect data to assess the status of ecosystem condition and potential stressor impacts throughout SINERR, based on these various indicators and corresponding management thresholds, and to provide this information as a baseline for determining how such conditions may be changing with time. While sample analysis is still ongoing a few preliminary results and observations are reported here. A final report will be completed once all data have been processed. The results will provide a comprehensive weight-of-evidence basis for evaluating current condition (aka a “state-of-the-SINEER environmental report”) and serve as a quantitative benchmark for tracking any future changes due to either natural or human disturbances. Another goal of the study is to demonstrate its utility as a possible model for assessing the status of condition at other NEERS sites using similar and consistent methods to promote system-wide regional and national comparisons.

A geo-referenced benthic habitat survey in support of natural resource management: Port Graham Bay, Alaska

The impact of recent changes in climate on the arctic environment and its ecosystems appear to have a dramatic affect on natural populations (National Research Council Committee on the Bering Sea Ecosystem 1996) and pose a serious threat to the continuity of indigenous arctic cultures that are dependent on natural resources for subsistence (Peterson D. L., Johnson 1995). In the northeast Pacific, winter storms have intensified and shifted southward causing fundamental changes in sea surface temperature patterns (Beamish 1993, Francis et al. 1998). Since the mid 1970’s surface waters of the central basin of the Gulf of Alaska (GOA) have warmed and freshened with a consequent increase in stratification and reduced winter entrainment of nutrients (Stabeno et al. 2004). Such physical changes in the structure of the ocean can rapidly affect lower trophic levels and indirectly affect fish and marine mammal populations through impacts on their prey (Benson and Trites 2002). Alaskan natives expect continued and perhaps accelerating changes in resources due to global warming (DFO 2006).and want to develop strategies to cope with their changing environment.

Distribution of persistent organic contaminants in canyons and on the continental shelf off central California

The National Status and Trends (NS&T) Program has conducted studies to determine the spatial extent and severity of chemical contamination and associated adverse biological effects in coastal bays and estuaries of the United States since 1991. Sediment contamination in U.S. coastal areas is a major environmental issue because of its potential toxic effects on biological resources and often, indirectly, on human health. Thus, characterizing and delineating areas of sediment contamination and toxicity and demonstrating their effect(s) on benthic living resources are therefore important goals of coastal resource management at NOAA. The National Centers for Coastal Ocean Science, and the Office of National Marine Sanctuaries, in cooperation with the U.S. Geological Survey (USGS), University of California Moss Landing Marine Lab (MLML), and the Monterey Bay Aquarium Research Institute (MBARI), conducted ecosystem monitoring and characterization studies within and between marine sanctuaries along the California coast in 2002 and 2004 on the NOAA RV McArthur. One of the objectives was to perform a systematic assessment of the chemical and physical habitats and associated biological communities in soft bottom habitats on the continental shelf and slope in the central California region. This report addresses the magnitude and extent of chemical contamination, and contaminant transport patterns in the region. Ongoing studies of the benthic community are in progress and will be reported in an integrated assessment of habitat quality and the parameters that govern natural resource distributions on the continental margin and in canyons in the region.

Study on primary production and its importance in an integrated fisheries research programme

The importance of the ocean as a source of cheap protein food is too well-known to be emphasised. In recent years there has been a tremendous increase in the fishing activity in all maritime nations and during the last few years the total world production has markedly grown. This study explains the importance of a planned exploitation according to scientific principles to preserve the availability and natural fluctuations in the abundance of stocks of marine fish and other commercially important organisms.

Evaluation on propagation of common carp (Cyprinus carpio Lin.) with hormonal and natural stimuli

The success of breeding of common carp (Cyprinus carpio) using hormonal inducement and environmental stimuli was evaluated considering different sex ratios, and natural and artificial substrates. A total of 18 females (weighing 250 to 2200g) divided into 6 treatments were investigated. A successful spawning was observed in all the treatment groups, only. 66.66% female responded successfully to LHRH-A combined with dompheridone and 83.33% female in natural stimuli. Females induced with LHRH-A and dompheridone found prompt ovulation than that of natural stimulation. A significant variation (F=7.45, P<0.05) was found among the different treatment groups. The number of eggs released appear to depend on body weight (t=15.72, P<0.05), sex ratio (t=7.96, P<0.05) and percentage of ovulated females (t=5.34, P<0.05). Although environmentally stimulated females released more eggs than injected female (t=5.18, P<0.05) but their survival rate was similar (t=1.77, P<0.05). Comparison between the two approaches under the conditions of AIT hatchery shown that both are suitable for spawning induction in common carp. However, environmental stimulation is advantageous because of the less labor and lower cost required for ovulation.

Bacterial quality and depuration of the green mussel Perna viridis from natural beds

Green mussel (Perna viridis) and sea water from their natural beds on the coastal areas of Porto Novo were studied between April and August 1996 for their bacterial quality. Water samples from the beds were also analysed for their physico-chemical parameters. The total bacterial count of mussels from natural beds as well as bed waters ranged 10³ organisms per gram of mussel meat suspension and per milliliter of sea water. The faecal coliforms were found to be within the permissible limits. Pathogenic bacteria such as Salmonella spp., Streptococcus spp. and Staphylococcus spp. were absent. The variations in pH, temperature, salinity and dissolved oxygen of the seawater samples were insignificant. The mussels were subjected to depuration by different methods among which chlorination was found to be most effective.

Brackish-water fishery resources

Ceylon has about 300,000 acres of coastal brackish-water areas of which about 100,000 acres constitute shallow lagoons, tidal flats, mangrove swamps and saline marshes, and the rest deeper lagoons and estuaries. While the former represent a vast potential resource with regard to fish farming, the latter are the sites of important fisheries. W. H. Schuster (1951) estimated the average natural production of Ceylon’s brackish waters to be less than 20 lbs. per acre per annum. Since then estimates have been made by the author for a rich lagoon, the Negombo lagoon, a poorly productive lagoon, the Ratgama lake (Dodanduwa) and studies are in progress of some of the other lagoons. The natural production of the Ratgama lake was estimated in 1959 to be 18.5 lbs. per acre per annum while that of Negombo lagoon was estimated in 1960 to be 65 lbs. per acre per annum. It is reasonable to estimate the average production of Ceylon's brackish-waters to be 25 lbs. per acre per annum. Thus the total production is about 3,350 tons per annum. Considering the fact that the island's present total production is 90,000 tons per annum, the brackish-waters contribute 3.7% of it. Schuster (1951) further states that the natural production in the brackish-waters of other countries is around 80 lbs. per acre per annum. In order to increase our average natural production to this value it would seem necessary to consider the nature, biology and fish resources of the brackish-waters and draw some conclusions with regard to their proper exploitation.

Wadge Bank trawl fishery studies. Pt. 4. An analysis of the length frequency measurements of the sea bream (Lethrinus nebulosus) made in 1949 and 1953 to 1958

Length frequency distributions of the sea bream collected during the period 1953 to 1958 have been analysed. The increase in average sizes of the sea bream with depth suggests a movement to deeper waters with increase in size. By numbers, the sea bream is more abundant between 21 and 30 fathoms than in deeper areas. The recruitment was continuous and regular. There is no sign of entry or progression of a dominant brood throughout the period under study. Length frequency distribution shows three distinct modes. The first mode occurs regularly but does not progress beyond 40cm, recruitment being balanced by natural and fishing mortality. The other two which are not regular are probably the result of fishing outside regular areas. Short sections of “growth” lines which fit into one another when extrapolated, are evident. The larger lines obtained by extrapolation are parallel to one another. These tentative "growth lines" indicate that this species which enters the fishing grounds, when 15 cm or larger in length are exploited by the trawl fishery for a period of three to four years. This species appears to be six months old when it enters the fishing grounds and increases in length by about 37.5 cm in the next 30 months. Later growth slows down. The average size of the specimens sampled continued to get smaller from 1953 till 1957. It is shown that this reduction in size is due to increased fishing effort.

A preliminary report on Chanos fry surveys carried out in the brackish water areas of Mannar, Puttalam and Negombo

This paper records the results of the Chanos fry surveys carried out in Mannar, Puttalam and Negombo lagoon areas since 1967, and gives a summary of the earlier surveys. The maximum amount of Chanos fry was obtained from Mannar area during April and May. All three areas have their main commercial fry season in April and May with a second commercially negligible season in October–November. The quantity of fry collected has been utilized to evaluate the potential fry production figures. Mannar 400,000,000 fry/annum. Puttalam 200,000,000 fry/annum. It would be extremely difficult to estimate the number of eggs laid, the larvae hatched and the fry available each year along the coastal areas of Ceylon. It is necessary to obtain biological, meteorological and oceanographical data so as to provide a basis for the prediction and estimation of fry populations in the coastal waters of Ceylon. The suggested ideal season for commercial catches of Chanos fry is April–May with operations to be carried out simultaneously all along the west coast.

East African Inland Fisheries Research Organization Annual Report for year ended 31st December 1949

The present work is now concentrated mainly on the Tilapia fishery. As a result of past experience it is easier to direct efforts in a way likely to give useful results. Work on the Tilapia is now beyond the purely exploratory stage and these fishing experiments are being carried but in areas which are known to contain large numbers of Tilapia. Nets of different mesh size are being used in order to catch all stages of these fish. These nets are being fished at the surface and at the bottom, close to the shore and further out. The data collected should provide more precise information regarding the periodic migration, both vertical and horizontal, of these fish, a better understanding of their life history and breeding habits, and indicate' the potential possibilities of this fishery. These data should explain the variation in numbers of fish caught by Africans during different months of the year; they should also make it possible to determine more exactly the best type of net for use in this particular fishery.

National Agricultural Research Organisation. Fisheries Resources Research Institute Annual Report 2002/2003

One of the avenues through which the Government objective of poverty eradication in Uganda can be achieved is Fisheries development and management. Up to 20% of Uganda’s surface area is covered by aquatic systems i.e. lakes, rivers, streams and swamps and to a large extent, all these are interconnected. The large lakes: Victoria, Albert, Kyoga, George and Edward are sites of the more important commercial fisheries, but even the smaller water bodies, rivers (e.g. the Rivers Nile and Kagera) and the surrounding swamps provide sources of livelihood to rural areas. Fish is an important source of high quality food, employment revenue and is currently the second most important export commodity next to coffee generating approximately US $ 80 million annually. Fish exports to regional markets are worth at least US $ 20 million annually. Fish flesh is rich in proteins, which are superior to those of beef and poultry. Fish flesh contains an anticholesterol which assists in reducing heart diseases. Some fishes are of medicinal value e.g. haplochromines (Nkejje) are used to treat measles. Most of the fish in Uganda is got from lakes Victoria, Kyoga, Albert and Albert Nile, Edward and George production systems as well as from the 160 minor lakes and rivers and the associated wetland systems. Capture fisheries based in these systems contribute up to 99% of the fish production in Uganda but aquaculture is also picking up. The fishing industry employs up to one million Ugandans

East African Fisheries Research Organization Annual Report 1951

The examination of a considerable amount of data has led to the conclusion that Lake Victoria should be considered as many lakes within a lake. This is not a vague and seemingly obvious remark based on the superficial observation that it is a very large lake containing numerous islands and with a highly indented coastline, and therefore providing variable local conditions. Such local conditions would exist in any lake whose basin departed from a simple geometric form. But evidence has now been collected to show that really significant differences occur between different regions within the lake. These differences are apparent from a variety of data, including the nature of the bottom deposits, the chemical and hydrological condition of the water, the amount and kind of plankton and the distribution and abundance of the fauna. Our findings are as yet somewhat sketchy, and it will be a long time before it will be possible to draw an adequate picture of the various regions of the lake; it is however, of great value to have reached a position enabling us to form this general concept. The most striking and definite evidence is derived, as might be expected, from hydrological data. Details of this work are contained in the hydrological section of this report. Any data recorded below should be considered as applying only to the particular areas mentioned. In other words it would, to draw an obvious example be wrong to suppose that because fish grow at a particular rate in one part of the lake they will grow at the same rate or to the same size in other regions of the lake.