The X-ray crystallographic structure of Escherichia coli branching enzyme

Branching enzyme catalyzes the formation of alpha-1,6 branch points in either glycogen or starch. We report the 2.3-Angstrom crystal structure of glycogen branching enzyme from Escherichia coli. The enzyme consists of three major domains, an NH2-terminal seven-stranded beta-sandwich domain, a COOH-terminal domain, and a central alpha/beta-barrel domain containing the enzyme active site. While the central domain is similar to that of all the other amylase family enzymes, branching enzyme shares the structure of all three domains only with isoamylase. Oligosaccharide binding was modeled or branching enzyme using the enzyme-oligosaccharide complex structures of various alpha-amylases and cyclodextrin glucanotransferase and residues were implicated in oligosaccharide binding. While most of the oligosaccharides modeled well in the branching enzyme structure, an approximate 50degrees rotation between two of the glucose units was required to avoid steric clashes with Trp(298) of branching enzyme. A similar rotation was observed in the mammalian alpha-amylase structure caused by an equivalent tryptophan residue in this structure. It appears that there are two binding modes for oligosaccharides in these structures depending on the identity and location of this aromatic residue.

Casimir energy in a small volume multiply connected static hyperbolic preinflationary universe

A few years ago, Cornish, Spergel and Starkman (CSS) suggested that a multiply connected small universe could allow for classical chaotic mixing as a preinflationary homogenization process. The smaller the volume, the more important the process. Also, a smaller universe has a greater probability of being spontaneously created. Previously DeWitt, Hart and Isham (DHI) calculated the Casimir energy for static multiply connected fat space-times. Because of the interest in small volume hyperbolic universes (e.g., CSS), we generalize the DHI calculation by making a numerical investigation of the Casimir energy for a conformally coupled, massive scalar field in a static universe, whose spatial sections are the Weeks manifold, the smallest universe of negative curvature known. In spite of being a numerical calculation, our result is in fact exact. It is shown that there is spontaneous vacuum excitation of low multipolar components.

Casimir energy density in closed hyperbolic universes

The original Casimir effect results from the difference in the vacuum energies of the electromagnetic field, between that in a region of space with boundary conditions and that in the same region without boundary conditions. In this paper we develop the theory of a similar situation, involving a scalar field in spacetimes with closed spatial sections of negative curvature.

Expansion of a Bose-Einstein condensate formed on a joint harmonic and one-dimensional optical-lattice potential

We study the expansion of a Bose-Einstein condensate trapped in a combined optical-lattice and axially-symmetric harmonic potential using the numerical solution of the mean-field Gross-Pitaevskii equation. First, we consider the expansion of such a condensate under the action of the optical-lattice potential alone. In this case the result of numerical simulation for the axial and radial sizes during expansion is in agreement with two experiments by Morsch et al (2002 Phys. Rev. A 66 021601(R) and 2003 Laser Phys. 13 594). Finally, we consider the expansion under the action of the harmonic potential alone. In this case the oscillation, and the disappearance and revival of the resultant interference pattern is in agreement with the experiment by Muller et al (2003 J. Opt. B: Quantum Semiclass. Opt. 5 S38).

Casimir energy in multiply connected static hyperbolic universes

We generalize a previously obtained result for the case of a few other static hyperbolic universes with manifolds of nontrivial topology as spatial sections.

Combination of Tevatron Searches for the Standard Model Higgs Boson in the W+W- Decay Mode

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Combined Tevatron upper limit on gg -> H -> W+W- and constraints on the Higgs boson mass in fourth-generation fermion models

We combine results from searches by the CDF and D0 collaborations for a standard model Higgs boson (H) in the process gg -> H -> W+W- in p (p) over bar collisions at the Fermilab Tevatron Collider at root s = 1.96 TeV. With 4.8 fb(-1) of integrated luminosity analyzed at CDF and 5.4 fb(-1) at D0, the 95% confidence level upper limit on sigma(gg -> H) x B(H -> W+W-) is 1.75 pb at m(H) = 120 GeV, 0.38 pb at m(H) = 165 GeV, and 0.83 pb at m(H) = 200 GeV. Assuming the presence of a fourth sequential generation of fermions with large masses, we exclude at the 95% confidence level a standard-model-like Higgs boson with a mass between 131 and 204 GeV.

Determination of jet energy calibration and transverse momentum resolution in CMS

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Contadores eletrônicos no laboratório didático: parte II. Medida de intervalos de tempo sucessivos

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

The analytic torsion of a disc

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

ANTIMICROBIAL ACTIVITY of CARPOLOBIA LUTEA EXTRACTS and FRACTIONS

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Detection of Mycoplasma hyopneumoniae by polymerase chain reaction in swine presenting respiratory problems

A Nested-PCR (N-PCR) tem como objetivo melhorar a sensibilidade do diagnóstico direto da Pneumonia Enzoótica Suína, pois o isolamento do Mycoplasma hyopneumoniae é trabalhoso tornando-se inviável na rotina. Neste trabalho, foi realizado um projeto piloto para a otimização da técnica de N-PCR, utilizando três variáveis: tipo de amostra biológica, meio de transporte da amostra e método de extração do DNA, utilizando oito animais. Os resultados obtidos foram empregados no segundo experimento para a validação do teste utilizando 40 animais. Os resultados obtidos, pela otimização da N-PCR, neste trabalho, permite sugerir esta prova como método de diagnóstico de rotina no monitoramento das infecções por Mycoplasma hyopneumoniae em granjas de suínos.

Degradação de pastagens na Região Amazônica: propriedades físicas do solo e crescimento de raízes

O objetivo deste trabalho foi avaliar: (i) a relação entre a degradação de pastagens de colonião manejadas com queima, e as modificações nas propriedades físicas e morfológicas de um Argissolo Vermelho-Amarelo da Amazônia; (ii) o crescimento radicular de pastagens com diferentes níveis de degradação; (iii) o potencial de recuperação de pastagens degradadas de colonião com a introdução de andropógon. Numa propriedade rural da Região de Marabá, PA, foram estudados quatro tipos de pastagem: pastagem produtiva de colonião (Panicum maximum Jacq.); pastagem de colonião em declínio produtivo; pastagem de colonião degradada (capoeira); pastagem de colonião degradada e recuperada com andropógon (Andropogon gayanus Kunth). Como referência das propriedades do solo antes do desmatamento, estudou-se, também, uma reserva de mata nativa. A queima das pastagens foi prática usual, e apesar disso, estas não foram adubadas. A degradação da pastagem diminuiu a cobertura do solo e o deixou exposto à chuva e ao pisoteio do gado, o que resultou em aumento da densidade do solo na camada superficial e diminuição do grau de floculação da argila e da porosidade total. A diminuição da produção da parte aérea na pastagem degradada foi acompanhada de diminuição do número de raízes no perfil do solo, e da concentração do sistema radicular próximo à superfície. O andropógon demonstrou bom potencial para recuperação das áreas de pastagens degradadas, na Região Amazônica.

Size and sex compositions, length-weight relationship, and occurrence of the Brazilian sharpnose shark, Rhizoprionodon lalandii, caught by artisanal fishery from southeastern Brazil

Although the Brazilian sharpnose shark, Rhizoprionodon lalandii (Muller and Henle, 1839), is an inshore species widely distributed in the Western Atlantic from Panama to Uruguay, there is little available information on its biology. During a long-term study of small coastal sharks caught by gill net fisheries in southeastern Brazil (PROJETO CACAO), 3643 specimens of R. lalandii were examined, comprising 61.3% of the total sharks,and including all sizes classes, from 30 to 78,5 cm TL., and weights from 100 to 2950 g. The length-weight relationships were not significantly different between sexes, Overall sex ratio favoured the males slightly at the rate of 1.3: 1. Sex ratios, however, did differ significantly between season and size classes. This species occurred in this area all year long. Three seasonal size-class Occurrence patterns were recognized: (1) between October and March, the juveniles were more frequents (2) from April to July, adults were most common, and (3) from August to September, neonates were most numerically abundant. Such patterns we to associated with reproductive tactics that may reduce intra-specific and inter-specific competition with hammerhead shark neonates (Sphyrna lewini). probably result in reduced natural mortality of the offspring during their first few months. (C) 2005 Elsevier B.V. All rights reserved.

RESULTS FROM THE SLD BARREL CRID DETECTOR

We report on operational experience with an experimental performance of the SLD barrel Cherenkov Ring Imaging Detector from the 1992 and 1993 physics runs. The liquid (C6F14) and gas (C5F12) radiator recirculation systems have performed well, and the drift gas supply system has operated successfully with TMAE for three years. Cherenkov rings have been observed from both the liquid and gas radiators. The number and angular resolution of Cherenkov photons have been measured, and found to be close to design specifications.