The connectome viewer toolkit: an open source framework to manage, analyze, and visualize connectomes.

Advanced neuroinformatics tools are required for methods of connectome mapping, analysis, and visualization. The inherent multi-modality of connectome datasets poses new challenges for data organization, integration, and sharing. We have designed and implemented the Connectome Viewer Toolkit - a set of free and extensible open source neuroimaging tools written in Python. The key components of the toolkit are as follows: (1) The Connectome File Format is an XML-based container format to standardize multi-modal data integration and structured metadata annotation. (2) The Connectome File Format Library enables management and sharing of connectome files. (3) The Connectome Viewer is an integrated research and development environment for visualization and analysis of multi-modal connectome data. The Connectome Viewer's plugin architecture supports extensions with network analysis packages and an interactive scripting shell, to enable easy development and community contributions. Integration with tools from the scientific Python community allows the leveraging of numerous existing libraries for powerful connectome data mining, exploration, and comparison. We demonstrate the applicability of the Connectome Viewer Toolkit using Diffusion MRI datasets processed by the Connectome Mapper. The Connectome Viewer Toolkit is available from http://www.cmtk.org/

Molecular genetic framework for protophloem formation.

The phloem performs essential systemic functions in tracheophytes, yet little is known about its molecular genetic specification. Here we show that application of the peptide ligand CLAVATA3/EMBRYO SURROUNDING REGION 45 (CLE45) specifically inhibits specification of protophloem in Arabidopsis roots by locking the sieve element precursor cell in its preceding developmental state. CLE45 treatment, as well as viable transgenic expression of a weak CLE45(G6T) variant, interferes not only with commitment to sieve element fate but also with the formative sieve element precursor cell division that creates protophloem and metaphloem cell files. However, the absence of this division appears to be a secondary effect of discontinuous sieve element files and subsequent systemically reduced auxin signaling in the root meristem. In the absence of the formative sieve element precursor cell division, metaphloem identity is seemingly adopted by the normally procambial cell file instead, pointing to possibly independent positional cues for metaphloem formation. The protophloem formation and differentiation defects in brevis radix (brx) and octopus (ops) mutants are similar to those observed in transgenic seedlings with increased CLE45 activity and can be rescued by loss of function of a putative CLE45 receptor, BARELY ANY MERISTEM 3 (BAM3). Conversely, a dominant gain-of-function ops allele or mild OPS dosage increase suppresses brx defects and confers CLE45 resistance. Thus, our data suggest that delicate quantitative interplay between the opposing activities of BAM3-mediated CLE45 signals and OPS-dependent signals determines cellular commitment to protophloem sieve element fate, with OPS acting as a positive, quantitative master regulator of phloem fate.

Alternativas experimentais na avaliação de famílias em programas de melhoramento genético do feijoeiro

O objetivo deste trabalho foi avaliar o emprego do delineamento em blocos aumentados e de métodos de análise espacial nas etapas iniciais dos programas de melhoramento do feijoeiro (Phaseolus vulgaris L.). Foram avaliadas 121 famílias S2, provenientes de um programa de seleção recorrente, em três locais: Lavras, Lambari e Patos de Minas. Utilizou-se um látice simples 11 x 11, por local. Adicionalmente, foram incluídas duas testemunhas, Carioca e EMGOPA201-Ouro, cada uma alocada a intervalos regulares de cinco em cinco parcelas em cada bloco. A parcela foi composta por duas linhas de dois metros, com 15 sementes por metro. Os dados de produção de grãos (g/parcela) foram submetidos a uma análise de variância considerando os seguintes delineamentos e métodos: látice, blocos aumentados, blocos ao acaso, método de Papadakis, método das médias móveis e testemunha intercalar. Realizou-se a comparação entre as diferentes estratégias quanto à eficiência no controle do erro experimental e em relação à precisão das estimativas de parâmetros genéticos e fenotípicos obtidas em cada método. Constatou-se que o emprego do delineamento em blocos aumentados é viável para a seleção de famílias nas etapas iniciais dos programas de melhoramento genético, principalmente se for aplicada uma intensidade de seleção moderada; porém, esse delineamento não se mostrou apropriado para a estimação de parâmetros genéticos e fenotípicos, em virtude da baixa precisão das estimativas; o uso de testemunha intercalar não proporcionou melhoria na precisão experimental; os métodos de análise de vizinhança, Papadakis e o das médias móveis, foram eficientes no controle da heterogeneidade dos blocos, sendo esta eficiência similar àquela proporcionada pela análise em látice.

Avaliação de programas hormonais para a indução e sincronização do estro em caprinos

O objetivo deste trabalho foi estabelecer alternativas para indução e sincronização do estro em cabras leiteiras manejadas semi-intensivamente. Foram conduzidos quatro experimentos com 411 cabras na Embrapa-Centro Nacional de Pesquisa deCaprinos, Sobral, CE. No protocolo básico, utilizaram-se esponjas intra-vaginais com 50 mg de acetato de medroxiprogesterona (MAP) por dez dias e aplicação intra-muscular de 100 mig de cloprostenol e 200 UI de gonadotropina coriônica eqüina (eCG) no 8º dia; a inseminação artificial (IA), com sêmen congelado foi feita 38 horas após remoção da esponja. No experimento1 substituiu-se a e CG pelo "efeito macho"; no experimento 2 substituiu-se a dose de MAP para 60 mg; no experimento3 compararam-se diferentes momentos de IA: 38, 44 e 50 horas e no experimento 4 substituiu-se a eCG pela gonadotropina humana (hCG). Nenhuma das alternativas testadas modificou (P>0,05) a prolificidade. A IA em cio natural gerou maior (P<0,05) índice de parição no experimento2(67,7%) e no experimento 4 (73,3%). A dose de 60 mg de MAP permitiu realizar a IA mais tarde (44 horas apósretirar a esponja) sem detrimento da fertilidade. A hCG equivaleu a eCG, se aplicada 48 horas antes de retirar a esponja.

A competency framework in cardiothoracic surgery for training and revalidation - an international comparison.

The conventional methods of education, certification and recertification in cardiothoracic surgery face a paradigm shift in line with recent innovations in diagnostics and therapeutics. The attributes of a competent clinician entail proficiency in knowledge, communication, teamwork, management, health advocacy, professionalism and technical skills. This article investigates the skills required for a cardiothoracic surgeon to be competent. The relevant practice of certification and recertification across various regions has also been explored. Validated and competency-based curricula should be designed to develop core competencies to successfully integrate them into practice. Challenges to the implementation of such curricula and potential solutions are explored. Patient safety remains the ultimate aim to ensure excellence of both competency and performance.

Un ordenador por alumno: reflexiones del profesorado de Cataluña sobre los entornos 1x11

En la primera parte de este trabajo se presentan algunas reflexiones en torno a las recientes políticas educativas estatales de incorporación de las TIC en los centros educativos siguiendo el modelo de un ordenador por alumno. En una segunda parte, se aborda la concreción en Cataluña del proyecto Escuela 2.0 y la valoración que realiza el profesorado de esta comunidad autónoma de los entornos 1x1.

La incidencia de las tecnologías de la información y comunicación en los programas de formación continuada de jueces y magistrados

[spa] Los programas de formación continuada a distancia para jueces presentan problemas de ejecución debido de un lado a la dispersión geográfica de los destinatarios y de otra, a la necesidad de alcanzar cierto nivel de competencias tanto para su uso como para su diseño. En este contexto cobran especial significación la determinación de los objetivos así como el diseño curricular del programa que se pretende ejecutar.

2011 lAAF World Championships in Daegu: blood tests for all athletes in the framework of the Athlete Biological Passport.

The 2011 International Association of Athletics Federation (IAAF) World Championships took place in Daegu, Korea. For the first time, all athletes were blood tested prior to the competition in order to give a clear signal to the world athletic community of the wish to enter into the era of the Athlete Biological Passport and fight against doping in their sport. The hematological parameters were measured on site. Thus, a mobile-accredited laboratory for blood testing was created in Daegu. Two serum tubes were collected for clinical chemistry and hormonal analyses in order to build the bases of the endocrine and the androgen (steroid) modules of the Athlete Biological Passport in blood. This paper describes some of the main challenges the project faced with regard to the large number of athletes, competing in different disciplines, and the logistic problems that had to be solved for smart implementation of one of the most complex operations organized in the last decade in the fight against doping.

Diversidade genética da soja entre períodos e entre programas de melhoramento no Brasil

O objetivo deste trabalho foi detectar os efeitos do melhoramento sobre a diversidade do germoplasma da soja cultivada nas três ultimas décadas, por meio da comparação de seis programas de melhoramento e períodos de lançamento de cultivares, utilizando locos microssatélites. Em relação aos programas de melhoramento, todos os locos apresentaram diferenças significativas em suas distribuições alélicas. Alguns locos eram compostos de alelos exclusivos em alguns programas de melhoramento, enquanto outros foram compostos sempre dos mesmos alelos em maior freqüência para todos os programas. A AMOVA indicou maior porção da variância devido a cultivares dentro de programas e somente 5,3% (p<0,05) devido à diferença entre programas. Quando comparados os programas de melhoramento entre si, cinco entre as 15 comparações apresentaram diferenças significativas (p<0,05), estando presente o programa IAC em quatro destas cinco comparações. As estimativas de variabilidade da soja entre os períodos de melhoramento avaliados indicaram que somente 1,78% da variância total foi devida à diferença entre períodos (p>0,05). Os resultados sugerem que o germoplasma de soja utilizado em programas de melhoramento no Brasil manteve nível constante de diversidade genética nos últimos 30 anos, além de relativa heterogeneidade de determinados programas.

A framework for hybrid simulations of two-phase flow in porous media

Rough a global coarse problem. Although these techniques are usually employed for problems in which the fine-scale processes are described by Darcy's law, they can also be applied to pore-scale simulations and used as a mathematical framework for hybrid methods that couples a Darcy and pore scales. In this work, we consider a pore-scale description of fine-scale processes. The Navier-Stokes equations are numerically solved in the pore geometry to compute the velocity field and obtain generalized permeabilities. In the case of two-phase flow, the dynamics of the phase interface is described by the volume of fluid method with the continuum surface force model. The MsFV method is employed to construct an algorithm that couples a Darcy macro-scale description with a pore-scale description at the fine scale. The hybrid simulations results presented are in good agreement with the fine-scale reference solutions. As the reconstruction of the fine-scale details can be done adaptively, the presented method offers a flexible framework for hybrid modeling.

The International Universities Walking Project: Development of a Framework for Workplace Intervention Using the Delphi Technique

Background: This paper aimed to use the Delphi technique to develop a consensus framework for a multinational, workplace walking intervention. Methods: Ideas were gathered and ranked from eight recognized and emerging experts in the fields of physical activity and health, from universities in Australia, Canada, England, the Netherlands, Northern Ireland, and Spain. Members of the panel were asked to consider the key characteristics of a successful campus walking intervention. Consensus was reached by an inductive, content analytic approach, conducted through an anonymous, three-round, e-mail process. Results: The resulting framework consisted of three interlinking themes defined as “design, implementation, and evaluation.” Top-ranked subitems in these themes included the need to generate research capacity (design), to respond to group needs through different walking approaches (implementation), and to undertake physical activity assessment (evaluation). Themes were set within an underpinning domain, referred to as the “institution” and sites are currently engaging with subitems in this domain, to provide sustainable interventions that reflect the practicalities of local contexts and needs. Conclusions: Findings provide a unique framework for designing, implementing, and evaluating walking projects in universities and highlight the value of adopting the Delphi technique for planning international, multisite health initiatives.