Molecular Dynamics and the Diatomic Molecule as Harmonic Oscillator and Rigid Rotor

The HCl molecule is simulated (using Maple) in its dynamics, for both vibrational (and implied) rotational motions. A discussion of the center of mass transformations involved is part of the total presentation.

Design and Optimization of Four-dimensional Cone-beam Computed Tomography in Image-guided Radiation Therapy

The influence of respiratory motion on patient anatomy poses a challenge to accurate radiation therapy, especially in lung cancer treatment. Modern radiation therapy planning uses models of tumor respiratory motion to account for target motion in targeting. The tumor motion model can be verified on a per-treatment session basis with four-dimensional cone-beam computed tomography (4D-CBCT), which acquires an image set of the dynamic target throughout the respiratory cycle during the therapy session. 4D-CBCT is undersampled if the scan time is too short. However, short scan time is desirable in clinical practice to reduce patient setup time. This dissertation presents the design and optimization of 4D-CBCT to reduce the impact of undersampling artifacts with short scan times. This work measures the impact of undersampling artifacts on the accuracy of target motion measurement under different sampling conditions and for various object sizes and motions. The results provide a minimum scan time such that the target tracking error is less than a specified tolerance. This work also presents new image reconstruction algorithms for reducing undersampling artifacts in undersampled datasets by taking advantage of the assumption that the relevant motion of interest is contained within a volume-of-interest (VOI). It is shown that the VOI-based reconstruction provides more accurate image intensity than standard reconstruction. The VOI-based reconstruction produced 43% fewer least-squares error inside the VOI and 84% fewer error throughout the image in a study designed to simulate target motion. The VOI-based reconstruction approach can reduce acquisition time and improve image quality in 4D-CBCT.

Proceedings of the 23rd Annual Biochemical Engineering Symposium

The 23rd Annual Biochemical Engineering Symposium was held at the University of Oklahoma on April 17, 1993. The objectives of the symposium were to provide 1) a forum for informal discussion of biochemical engineering research being carried at the participating universities and 2) an opportunity for students to present and publish their work. Thirteen papers presented at the symposium are included in the proceedings. Because final publication usually takes place in refereed journals, the articles included here are typically brief and often cover work in progress. The program of the symposium and a list of participants are included in the proceedings. ContentsA Low-Cost Bioreactor Strategy for RNA Synthesis, H. Anthony Marble, Eleni Chrisikos, and Robert H. Davis Development of a CELSS Bioreactor: Oxygen Transfer and Micromixing in Parabolic Flight, P.E. Villeneuve, K.S. Wenger, B.G. Thompson, T. Kedar, and E.H. Dunlop Scale-up of Dexter Murine Bone Marrow Cultures Utilizing a Three-Dimensional Fiberglass Support Matrix, John G. Highfill, Paul Todd, Steve Haley, and Dhinaker Kompala Modeling and Estimation of States of Recombinant Fermentations Using Nonlinear Input/Output Models, Vicotr M. Saucedo and M. Nazmul Karim Deadent Microfiltration of Bovine Serum Albumin Suspension Through Yeast Cake Layers and Assymetric Polymeric Membranes, Naveen Arora and Robert H. Davis Monitoring the Fate of Toluene and Phenol in the Rhizosphere, N. Muralidharan, Lawrence C. Davis, and Larry E. Erickson Hydrodynamic Motions Associated with Bubble Coalescence and Breakup, T.Y. Yiin, L.A. Glasgow, and L.E. Erickson Expression and Purification of a-Human Atrial Natriuretic Peptide in Escherichia coli by Fusion with L-Asparaginase, Nien-Tung Ma and Roger G. Harrison High Pressure Crystallization of Proteins, Mungara V. Saikumar, Charles E. Glatz, and Maurice A. Larson Structure/Function Relationships in the Catalytic and Starch Binding Domains of Glucoamylase, Pedro M. Coutinho, Clark Ford, Peter J. Reilly Cellular Responses of Insect Cell Spodoptera frugiperda to Environmental Stresses, Paul Yeh, Grace Y. Sun, Gary A. Weisman, Rakesh Bajpai A Novel Approach to Understanding the Antimicrobial Activity of Peptides, Naveen Pathak, Marie-Helene Janna, Gael Ruche, David McCarthy, and Roger Harrison Mass Transfer in the Bioremediation of Soils Contaminated with Trapped Non-Aqueous Phase Liquids, Xiaoqing Yang, Larry E. Jacobson, and L.T. Fan

40Ar-39Ar plateau and isochron ages from the Ninetyeast and Broken Ridges (Table 1)

Concordant plateau and isochron ages are obtained from 40Ar-39Ar incremental heating experiments on volcanic rocks recovered by drilling at three Leg 121 sites along the Ninetyeast Ridge and two dredge locations on the southern scarp of the Broken Ridge, eastern Indian Ocean. The new data confirm a northerly increase in the age of volcanism along the Ninetyeast Ridge, from 38 to 82 Ma; this lineament links current hotspot volcanism near the Kerguelen islands with the Rajmahal flood basalt eruptions at M0 time (117 ± 1 Ma). The Broken Ridge was formed over the same hotspot at 88-89 Ma, but later experienced rift-related volcanism in Paleocene time (63 Ma). The geometry and distribution of ages along these prominent volcanic ridges and the Mascarene-Chagos-Laccadive-Maldive ridge system in the western Indian Ocean are most compatible with plate motions over fixed hotspots near Kerguelen and Reunion islands, respectively.

Clinamen : Entre libertad y determinismo en De Rerum Natura de Lucrecio

En el presente trabajo se trabaja principalmente en la noción de clinamen, el cual debe entenderse como una desviación azarosa que ocurre en el átomo. Lucrecio argumenta, siguiendo la tradición atomista que lo precede, que el fundamento ontológico de la realidad, es que toda la naturaleza está compuesta de átomos y vacío. El filósofo adhiere a una concepción esencialmente mecanicista del cosmos: el hecho de que el mundo no es una creación de los dioses, hace que la naturaleza sea una constante repetición de los hechos. El concepto de clinamen lleva a Lucrecio plantear, además, el problema del determinismo y la libertad: si todo movimiento es siempre una relación causal con un antes, ¿de dónde viene este poder independiente del destino, a través del cual nos movemos hacia donde la voluntad de cada uno conduce? En segundo lugar, si todos los movimientos de los átomos son inflexiblemente determinados, la capacidad humana para decidir y asumir la responsabilidad de su accionar no podrían explicarse

Paleomagnetic properties of igneous rocks from several DSDP and ODP sites, western Pacific

Oceanic basalts and other related igneous rocks are considered excellent recorders of the Earth's paleomagnetic field. Consequently, basalt core paleomagnetic data are valuable for the constraints they provide on plate tectonic motions, especially for oceanic plates such as the Pacific. Unfortunately, few Deep Sea Drilling Project (DSDP) and Ocean Drilling Program (ODP) boreholes have been cored very deeply into the ocean crust. The result is that there are only a few sites at which a large enough number of basalt flows have been cored to properly average secular variation (e.g., Kono, 1980, doi:10.2973/dsdp.proc.55.135.1980; Cox and Gordon, 1984, doi:10.1029/RG022i001p00047). Furthermore, there are a number of sites where basaltic core samples were retrieved but the cores were not measured. Often this occurs because leg scientists had more important sections to work on, or the section was ignored because it was too short to record enough time to average secular variation and obtain a reliable paleolatitude. Even though it may not be possible to determine a precise paleolatitude from such short sections, measurements from a small number of flows are important because they can be combined with other coeval paleomagnetic data from the same plate to calculate a paleomagnetic pole (Gordon and Cox, 1980, doi:10.1111/j.1365-246X.1980.tb02642.x; Cox and Gordon, 1984, doi:10.1029/RG022i001p00047). For this reason, I obtained samples for paleomagnetic measurements from eight Pacific sites (169, 170, 171, 581, 597, 800, 803, and 865), most of which have not been previously measured for paleomagnetism.

Clinamen : Entre libertad y determinismo en De Rerum Natura de Lucrecio

En el presente trabajo se trabaja principalmente en la noción de clinamen, el cual debe entenderse como una desviación azarosa que ocurre en el átomo. Lucrecio argumenta, siguiendo la tradición atomista que lo precede, que el fundamento ontológico de la realidad, es que toda la naturaleza está compuesta de átomos y vacío. El filósofo adhiere a una concepción esencialmente mecanicista del cosmos: el hecho de que el mundo no es una creación de los dioses, hace que la naturaleza sea una constante repetición de los hechos. El concepto de clinamen lleva a Lucrecio plantear, además, el problema del determinismo y la libertad: si todo movimiento es siempre una relación causal con un antes, ¿de dónde viene este poder independiente del destino, a través del cual nos movemos hacia donde la voluntad de cada uno conduce? En segundo lugar, si todos los movimientos de los átomos son inflexiblemente determinados, la capacidad humana para decidir y asumir la responsabilidad de su accionar no podrían explicarse

Clinamen : Entre libertad y determinismo en De Rerum Natura de Lucrecio

En el presente trabajo se trabaja principalmente en la noción de clinamen, el cual debe entenderse como una desviación azarosa que ocurre en el átomo. Lucrecio argumenta, siguiendo la tradición atomista que lo precede, que el fundamento ontológico de la realidad, es que toda la naturaleza está compuesta de átomos y vacío. El filósofo adhiere a una concepción esencialmente mecanicista del cosmos: el hecho de que el mundo no es una creación de los dioses, hace que la naturaleza sea una constante repetición de los hechos. El concepto de clinamen lleva a Lucrecio plantear, además, el problema del determinismo y la libertad: si todo movimiento es siempre una relación causal con un antes, ¿de dónde viene este poder independiente del destino, a través del cual nos movemos hacia donde la voluntad de cada uno conduce? En segundo lugar, si todos los movimientos de los átomos son inflexiblemente determinados, la capacidad humana para decidir y asumir la responsabilidad de su accionar no podrían explicarse

Sedimentation and sediment redistribution on the Cocos Ridge from two seismic acquisition cruises, NEMO-3 and MV1014

We use digital seismic reflection profiles within a 1° * 1° survey area on the Cocos Ridge (COCOS6N) to study the extent and timing of sedimentation and sediment redistribution on the Cocos Ridge. The survey was performed to understand how sediment focusing might affect paleoceanographic flux measurements in a region known for significant downslope transport. COCOS6N contains ODP Site 1241 to ground truth the seismic stratigraphy, and there is a seamount ridge along the base of the ridge that forms a basin (North Flank Basin) to trap sediments transported downslope. Using the Site 1241 seismic stratigraphy and densities extrapolated from wireline logging, we document mass accumulation rates (MARs) since 11.2 Ma. The average sediment thickness at COCOS6N is 196 m, ranging from outcropping basalt at the ridge crest to ~ 400 m at North Flank Basin depocenters. Despite significant sediment transport, the average sedimentation over the entire area is well correlated to sediment fluxes at Site 1241. A low mass accumulation rate (MAR) interval is associated with the 'Miocene carbonate crash' interval even though COCOS6N was at the equator at that time and relatively shallow. Highest MAR occurs within the late Miocene-early Pliocene biogenic bloom interval. Lowest average MAR is in the Pleistocene, as plate tectonic motions caused COCOS6N to leave the equatorial productivity zone. The Pliocene and Pleistocene also exhibit higher loss of sediment from the ridge crest and transport to North Flank Basin. Higher tidal energy on the ridge caused by tectonic movement toward the margin increased sediment focusing in the younger section.

Paleomagnetism of ODP Leg 115 sediments

Ocean Drilling Program Leg 115 was designed to study Neogene sedimentation history in the western Indian Ocean Basin as well as the Cenozoic evolution of the Reunion hotspot. We describe the paleomagnetic analysis of the sediments recovered on this leg, focusing on the sites that provided the most readily interpretable data: Sites 706, 709, 710, and 711. Sediments from Site 706 show no reversals but appear to give a reliable reversed polarity primary direction, judged on the basis of the demagnetization behavior of individual samples as well as from the results of a fold test formulated by comparing the two holes drilled at this site. Magnetic polarity stratigraphy in sediments from Site 709 can be deduced in two limited sections of Pliocene-Pleistocene and Oligocene-Miocene age. Sediments recovered at Site 710 (and, to a lesser extent, Site 711) render a relatively continuous magnetic polarity stratigraphy that spans most of the Neogene and adds significantly to the body of data available to address problems in Miocene geochronology. In addition to these magnetostratigraphic results, the paleomagnetism of these sediments can be used to determine paleolatitude. Using the most reliable inclination measurements from Sites 706, 710, and 711, we compared paleomagnetic estimates of paleolatitude with estimates derived from a hotspot-based absolute plate motion model. Our data, which covers the interval since 33 Ma, shows that paleolatitudes calculated with the geocentric axial dipole assumption are in general accord with the hotspot predictions. However, a correction for the long-term nondipole field brings the paleomagnetic results into even better agreement with plate motions that are based on the fixity of African hotspots.

Age determination and Argon geochemistry of Hawaiian Emperor seamounts

The Hawaiian-Emperor bend has played a prominent yet controversial role in deciphering past Pacific plate motions and the tempo of plate motion change. New ages for volcanoes of the central and southern Emperor chain define large changes in volcanic migration rate with little associated change in the chain's trend, which suggests that the bend did not form by slowing of the Hawaiian hot spot. Initiation of the bend near Kimmei seamount about 50 million years ago (MA) was coincident with realignment of Pacific spreading centers and early magmatism in western Pacific arcs, consistent with formation of the bend by changed Pacific plate motion.

Dissipation rate measurements during R/V Maria S. Merian cruise MSM21/1b dives

GEOMAR's autonomous underwater vehicle (AUV Abyss REMUS 6000) was deployed within the framework of a multi-platform experiment in June 2012 with R/V Maria S. Merian cruise MSM21/1b at about 180 km downstream of Denmark Strait. The scientific payload included a pumped Seabird 49 FastCAT CTD system, a paroscientific pressure sensor, and shear and temperature microstructure profiler from Rockland Scientific Inc.. In total, six of eight AUV dives were carried out successfully. Aborts on three dives were caused by strong counter currents the AUV experienced in the Denmark Strait Overflow plume, which made the AUV fail to reach its waypoints on schedule. During all missions the AUV was programmed to dive at constant depth levels along? straight legs approximately parallel to chosen isobaths with a constant speed of 1.6 m s-1 through the water.

Physical oceanography from R/V Maria S. Merian cruise MSM21/1b dives

GEOMAR's autonomous underwater vehicle (AUV Abyss REMUS 6000) was deployed within the framework of a multi-platform experiment in June 2012 with R/V Maria S. Merian cruise MSM21/1b at about 180 km downstream of Denmark Strait. The scientific payload included a pumped Seabird 49 FastCAT CTD system, a paroscientific pressure sensor, and shear and temperature microstructure profiler from Rockland Scientific Inc.. In total, six of eight AUV dives were carried out successfully. Aborts on three dives were caused by strong counter currents the AUV experienced in the Denmark Strait Overflow plume, which made the AUV fail to reach its waypoints on schedule. During all missions the AUV was programmed to dive at constant depth levels along? straight legs approximately parallel to chosen isobaths with a constant speed of 1.6 m s-1 through the water.

Physical oceanography, current meter data, and microstructure measurements 180 km downstream of Denmark Strait sill during Maria S. Merian cruise MSM21/1b

The main objectives of the cruise MSM21/1b were to characterize the spatio-temporal variability of the Denmark Strait overflow and to identify processes responsible for the exchange of the overflow plume with ambient water downstream of Denmark Strait. A multi-platform approach was taken to achieve the goals, based on moorings, an autonomous underwater vehicle (AUV), as well as lowered and vessel-mounted observations. From these platforms, measurements of temperature, salinity, dissolved oxygen, current velocity, dissipation of turbulent kinetic energy, and bottom pressure were obtained.