Host genetic factors in American cutaneous leishmaniasis: a critical appraisal of studies conducted in an endemic area of Brazil

American cutaneous leishmaniasis (ACL) is a vector-transmitted infectious disease with an estimated 1.5 million new cases per year. In Brazil, ACL represents a significant public health problem, with approximately 30,000 new reported cases annually, representing an incidence of 18.5 cases per 100,000 inhabitants. Corte de Pedra is in a region endemic for ACL in the state of Bahia (BA), northeastern Brazil, with 500-1,300 patients treated annually. Over the last decade, population and family-based candidate gene studies were conducted in Corte de Pedra, founded on previous knowledge from studies on mice and humans. Notwithstanding limitations related to sample size and power, these studies contribute important genetic biomarkers that identify novel pathways of disease pathogenesis and possible new therapeutic targets. The present paper is a narrative review about ACL immunogenetics in BA, highlighting in particular the interacting roles of the wound healing gene FLI1 with interleukin-6 and genes SMAD2 and SMAD3 of the transforming growth factor beta signalling pathway. This research highlights the need for well-powered genetic and functional studies on Leishmania braziliensis infection as essential to define and validate the role of host genes in determining resistance/susceptibility regarding this disease.

Malaria in Brazil: what happens outside the Amazonian endemic region

Brazil, a country of continental proportions, presents three profiles of malaria transmission. The first and most important numerically, occurs inside the Amazon. The Amazon accounts for approximately 60% of the nation’s territory and approximately 13% of the Brazilian population. This region hosts 99.5% of the nation’s malaria cases, which are predominantly caused by Plasmodium vivax (i.e., 82% of cases in 2013). The second involves imported malaria, which corresponds to malaria cases acquired outside the region where the individuals live or the diagnosis was made. These cases are imported from endemic regions of Brazil (i.e., the Amazon) or from other countries in South and Central America, Africa and Asia. Imported malaria comprised 89% of the cases found outside the area of active transmission in Brazil in 2013. These cases highlight an important question with respect to both therapeutic and epidemiological issues because patients, especially those with falciparum malaria, arriving in a region where the health professionals may not have experience with the clinical manifestations of malaria and its diagnosis could suffer dramatic consequences associated with a potential delay in treatment. Additionally, because the Anopheles vectors exist in most of the country, even a single case of malaria, if not diagnosed and treated immediately, may result in introduced cases, causing outbreaks and even introducing or reintroducing the disease to a non-endemic, receptive region. Cases introduced outside the Amazon usually occur in areas in which malaria was formerly endemic and are transmitted by competent vectors belonging to the subgenus Nyssorhynchus (i.e., Anopheles darlingi, Anopheles aquasalis and species of the Albitarsis complex). The third type of transmission accounts for only 0.05% of all cases and is caused by autochthonous malaria in the Atlantic Forest, located primarily along the southeastern Atlantic Coast. They are caused by parasites that seem to be (or to be very close to) P. vivax and, in a less extent, by Plasmodium malariae and it is transmitted by the bromeliad mosquito Anopheles (Kerteszia) cruzii. This paper deals mainly with the two profiles of malaria found outside the Amazon: the imported and ensuing introduced cases and the autochthonous cases. We also provide an update regarding the situation in Brazil and the Brazilian endemic Amazon.

Ecoepidemiology, short history and control of Chagas disease in the endemic countries and the new challenge for non-endemic countries

Chagas disease is maintained in nature through the interchange of three cycles: the wild, peridomestic and domestic cycles. The wild cycle, which is enzootic, has existed for millions of years maintained between triatomines and wild mammals. Human infection was only detected in mummies from 4,000-9,000 years ago, before the discovery of the disease by Carlos Chagas in 1909. With the beginning of deforestation in the Americas, two-three centuries ago for the expansion of agriculture and livestock rearing, wild mammals, which had been the food source for triatomines, were removed and new food sources started to appear in peridomestic areas: chicken coops, corrals and pigsties. Some accidental human cases could also have occurred prior to the triatomines in peridomestic areas. Thus, triatomines progressively penetrated households and formed the domestic cycle of Chagas disease. A new epidemiological, economic and social problem has been created through the globalisation of Chagas disease, due to legal and illegal migration of individuals infected by Trypanosoma cruzi or presenting Chagas disease in its varied clinical forms, from endemic countries in Latin America to non-endemic countries in North America, Europe, Asia and Oceania, particularly to the United States of America and Spain. The main objective of the present paper was to present a general view of the interchanges between the wild, peridomestic and domestic cycles of the disease, the development of T. cruzi among triatomine, their domiciliation and control initiatives, the characteristics of the disease in countries in the Americas and the problem of migration to non-endemic countries.

Diagnostic reliability of an immunochromatographic test for Chagas disease screening at a primary health care centre in a rural endemic area

Many patients with Chagas disease live in remote communities that lack both equipment and trained personnel to perform a diagnosis by conventional serology (CS). Thus, reliable tests suitable for use under difficult conditions are required. In this study, we evaluated the ability of personnel with and without laboratory skills to perform immunochromatographic (IC) tests to detect Chagas disease at a primary health care centre (PHCC). We examined whole blood samples from 241 patients and serum samples from 238 patients. Then, we calculated the percentage of overall agreement (POA) between the two groups of operators for the sensitivity (S), specificity (Sp) and positive (PPV) and negative (NPV) predictive values of IC tests compared to CS tests. We also evaluated the level of agreement between ELISAs and indirect haemagglutination (IHA) tests. The readings of the IC test results showed 100% agreement (POA = 1). The IC test on whole blood showed the following values: S = 87.3%; Sp = 98.8%; PPV = 96.9% and NPV = 95.9%. Additionally, the IC test on serum displayed the following results: S = 95.7%; Sp = 100%; PPV = 100% and NPV = 98.2%. Using whole blood, the agreement with ELISA was 96.3% and the agreement with IHA was 94.1%. Using serum, the agreement with ELISA was 97.8% and the agreement with IHA was 96.6%. The IC test performance with serum samples was excellent and demonstrated its usefulness in a PHCC with minimal equipment. If the IC test S value and NPV with whole blood are improved, then this test could also be used in areas lacking laboratories or specialised personnel.

The use of rapid dengue diagnostic tests in a routine clinical setting in a dengue-endemic area of Colombia

There is insufficient evidence of the usefulness of dengue diagnostic tests under routine conditions. We sought to analyse how physicians are using dengue diagnostics to inform research and development. Subjects attending 14 health institutions in an endemic area of Colombia with either a clinical diagnosis of dengue or for whom a dengue test was ordered were included in the study. Patterns of test-use are described herein. Factors associated with the ordering of dengue diagnostic tests were identified using contingency tables, nonparametric tests and logistic regression. A total of 778 subjects were diagnosed with dengue by the treating physician, of whom 386 (49.5%) were tested for dengue. Another 491 dengue tests were ordered in subjects whose primary diagnosis was not dengue. Severe dengue classification [odds ratio (OR) 2.2; 95% confidence interval (CI) 1.1-4.5], emergency consultation (OR 1.9; 95% CI 1.4-2.5) and month of the year (OR 3.1; 95% CI 1.7-5.5) were independently associated with ordering of dengue tests. Dengue tests were used both to rule in and rule out diagnosis. The latter use is not justified by the sensitivity of current rapid dengue diagnostic tests. Ordering of dengue tests appear to depend on a combination of factors, including physician and institutional preferences, as well as other patient and epidemiological factors.

Rickettsia amblyommii infecting Amblyomma sculptum in endemic spotted fever area from southeastern Brazil

The Rickettsia bacteria include the aetiological agents for the human spotted fever (SF) disease. In the present study, a SF groupRickettsia amblyommii related bacterium was detected in a field collected Amblyomma sculptum (Amblyomma cajennense species complex) tick from a Brazilian SF endemic site in southeastern Brazil, in the municipality of Juiz de Fora, state of Minas Gerais. Genetic analysis based on genes ompA,ompB and htrA showed that the detected strain, named R. amblyommii str. JF, is related to the speciesR. amblyommii.

Serological based monitoring of a cohort of patients with chronic Chagas disease treated with benznidazole in a highly endemic area of northern Argentina

This study aimed to evaluate well-documented diagnostic antigens, named B13, 1F8 and JL7 recombinant proteins, as potential markers of seroconversion in treated chagasic patients. Prospective study, involving 203 patients treated with benznidazole, was conducted from endemic areas of northern Argentina. Follow-up was possible in 107 out of them and blood samples were taken for serology and PCR assays before and 2, 3, 6, 12, 24 and 36 months after treatment initiation. Reactivity against Trypanosoma cruzi lysate and recombinant antigens was measured by ELISA. The rate of decrease of antibody titers showed nonlinear kinetics with an abrupt drop within the first three months after initiation of treatment for all studied antigens, followed by a plateau displaying a low decay until the end of follow-up. At this point, anti-B13, anti-1F8 and anti-JL7 titers were relatively close to the cut-off line, while anti-T. cruzi antibodies still remained positive. At baseline, 60.8% (45/74) of analysed patients tested positive for parasite DNA by PCR and during the follow-up period in 34 out of 45 positive samples (75.5%) could not be detected T. cruzi DNA. Our results suggest that these antigens might be useful as early markers for monitoring antiparasitic treatment in chronic Chagas disease.

Overcoming the rare species modelling paradox: test of a novel hierarchical framework with an Iberian endemic plant

Rare species have restricted geographic ranges, habitat specialization, and/or small population sizes. Datasets on rare species distribution usually have few observations, limited spatial accuracy and lack of valid absences; conversely they provide comprehensive views of species distributions allowing to realistically capture most of their realized environmental niche. Rare species are the most in need of predictive distribution modelling but also the most difficult to model. We refer to this contrast as the "rare species modelling paradox" and propose as a solution developing modelling approaches that deal with a sufficiently large set of predictors, ensuring that statistical models aren't overfitted. Our novel approach fulfils this condition by fitting a large number of bivariate models and averaging them with a weighted ensemble approach. We further propose that this ensemble forecasting is conducted within a hierarchic multi-scale framework. We present two ensemble models for a test species, one at regional and one at local scale, each based on the combination of 630 models. In both cases, we obtained excellent spatial projections, unusual when modelling rare species. Model results highlight, from a statistically sound approach, the effects of multiple drivers in a same modelling framework and at two distinct scales. From this added information, regional models can support accurate forecasts of range dynamics under climate change scenarios, whereas local models allow the assessment of isolated or synergistic impacts of changes in multiple predictors. This novel framework provides a baseline for adaptive conservation, management and monitoring of rare species at distinct spatial and temporal scales.

The Ladinian flora from the Cassina beds (Meride Limestone, Monte San Giorgio, Switzerland): Preliminary results

A newly opened excavation in the Cassina beds of the Lower Meride Limestone (Monte San Giorgio UNESCO WHL, Canton Ticino, Southern Alps) has yielded a small collection of Ladinian plant fossils, together with vertebrate (mostly fish) and invertebrate remains The flora contains at least five species, conifer remains assignable to the genera Elatocladus, Voltzia and Pelourdea are the most common elements A new species, Elatocladus cassinae n Sp, is formally, described Co-occurring with the conifers arc seed ferns (Ptilozamites) and a few putative cycadalean remains (Taemopteris) Among the identified genera, only Volizia has previously been reported from Monte San Giorgio The fossils presented in this paper indicate that a diversified flora thrived in the region during the Ladman Floral composition and preservation patterns are suggestive of a taphonomically-biased record and a relatively far-away source area

Economies of Feedlot Scale, Biosecurity, Investment, and Endemic Livestock Disease, September 2006

Infectious livestock disease creates externalities for proximate animal production enterprises. The distribution of production scale within a region should influence and be influenced by these disease externalities. Taking the distribution of the unit costs of stocking an animal as primitive, we show that an increase in the variance of these unit costs reduces consumer surplus. The effect on producer surplus, total surplus, and animal concentration across feedlots depends on the demand elasticity. A subsidy to smaller herds can reduce social welfare and immiserize the farm sector by increasing the extent of disease. While Nash behavior involves excessive stocking, disease effects can be such that aggregate output declines relative to first-best. Disease externalities can induce more adoption of a cost-reducing technology by larger herds so that animals become more concentrated across herds. For strategic reasons, excess overall adoption of the innovation may occur. Larger herds are also more likely to adopt biosecurity innovations, explaining why larger herds may be less diseased in equilibrium.

A Flora do Distrito de Aveiro : Paeoniaceae a Linaceae

O presente estudo teve como principal objectivo contribuir para o conhecimento da diversidade florística do Distrito de Aveiro, com base nos dados do Herbário da Universidade de Aveiro e revisão bibliográfica. Como é natural, este catálogo florístico não inclui todos os espécimes que se encontram depositados no herbário, mas sim uma percentagem significativa dos mesmos. Catalogou-se cerca de 178 taxa, distribuídos por 18 famílias e 86 géneros, inseridos nas famílias Paeoniaceae a Linaceae, segundo a Nova Flora de Portugal (FRANCO, 1971). Realizou-se uma análise fitogeográfica, considerando os espectros taxonómicos, biológico e corológico, incluindo também uma análise fenológica de floração e frutificação e do estatuto de conservação das plantas, relacionando-os com factores abióticos como geologia, hidrografia e bioclimatologia, factores que parecem influenciar a diversidade florística da região.

The maritime shrew, Sorex maritimensis (Insectivora : Soricidae): a newly recognized Canadian endemic.

Previous morphological and cytological analyses have suggested that the arctic shrew (Sorex arcticus) as currently recognized may be two distinct species. Specifically, those studies demonstrated considerable differentiation between the putative subspecies S. a. maritimensis and one or both of the other two subspecies, S. a. arcticus and S. a. laricorum. Phylogenetic analysis of 546 base pairs of cytochrome b sequence data from 10 arctic shrews from across Canada indicates that maritimensis is the sister-group to arcticus + laricorum. Furthermore, there is considerable genetic divergence between maritimensis and the other two putative subspecies (similar to8-9%; Kimura's two-parameter distance). Given that maritimensis and arcticus + laricorum appear to be reciprocally monophyletic clades with considerable genetic divergence (i.e., greater than that between other recognized pairs of sister-species within the S. araneus-arcticus group), we propose that S. maritimensis be recognized as a distinct species. The proportion of third-position transversion substitutions between S. arcticus and S. maritimensis suggests that these two species shared a common ancestor approximately 2.4 million years ago.

Flora de Cabo Verde

O Projecto Flora de Cabo Verde é uma iniciativa conjunta do Instituto de Investigação Científica Tropical (IICT) e do Instituto Nacional de Investigação e Desenvolvimento Agrário (INIDA) de Cabo Verde, iniciado em 1990. O objectivo do projecto é a publicação, em português e em forma de Flora, de fascículos contendo, cada um, o estudo de uma família de plantas vasculares ocorrendo no Arquipélago de Cabo Verde, tanto as nativas, em que se incluem as endémicas, como as exóticas naturalizadas. A obra é dirigida por uma Comissão Editorial constituída por dois elementos do IICT, dois do INIDA e um do Instituto Botânico de Coimbra. O estudo das diversas famílias é feito de acordo com o sistema de classificação de Cronquist, de utilização comum na região oeste-africana. O tratamento taxonómico é o mais uniforme possível. Todos os taxa são introduzidos em chaves dicotómicas para permitir uma rápida distinção com recurso a características facilmente observáveis e descritos morfologicamente. Para cada espécie ou taxon infra-específico é citada a bibliografia respectiva respeitante à área geográfica, assim como as sinonímias igualmente respeitantes à área. É referida a sua distribuição em Cabo Verde com uma ou duas citações de materiais por ilha e a distribuição mundial. São ainda feitas referências à ecologia, utilizações e nomes vulgares nas diversas ilhas. A obra é iconografada com estampas relativas a todos os géneros com espécies nativas ou naturalizadas. A base do estudo é constituída pelos materiais depositados nos diversos herbários que reconhecidamente possuem plantas colectadas na região, com particular ênfase nos Herbários do Instituto de Investigação Científica Tropical (LISC), do Instituto Nacional de Investigação e Desenvolvimento Agrário, de Cabo Verde (CECV), do Instituto Botânico da Universidade de Coimbra (COI), do Instituto Botânico da Universidade de Lisboa (LISU), do Muséum National d’Histoire Naturelle, de Paris (P) e do Botanical Garden and Museum, de Oslo (O). Quando finalizada, a Flora de Cabo Verde irá abranger mais de 700 taxa pertencentes a diversas famílias de Pteridófitos, a 97 famílias de Dicotiledóneas e a 18 famílias de Monocotiledóneas. Até à data foram publicadas 88 famílias, incluindo 232 géneros e 417 taxa. Este projecto, ao ter por finalidade o conhecimento da diversidade vegetal nas ilhas do Arquipélago, constituirá um suporte básico para outros tipos de estudos como sejam a caracterização da vegetação, a avaliação de impactos ambientais, o planeamento de políticas ambientais e agrárias ou conservação da biodiversidade.

Flora de cabo Verde: Plantas Vasculares – 55. Rhamnaceae

Árvores, arbustos, subarbustos ou lianas, raramente ervas, glabros ou com pêlos simples. Folhas alternas, raramente opostas, simples, geralmente pecioladas; limbo inteiro, dentado, serrado ou trenado, peninérveo ou com 3-5 nervuras desde a base; estípulas em regra presentes, algumas vezes espinescentes, f caducas. Inflorescências axilares, mais raramente terminais, com as flores em cimeiras, racemos ou fascículos, por vezes, unifloras. Flores brancas, esverdeadas ou amareladas, actinomórficas, periginicas ou epigínicas, bissexuadas raramente unissexuadas. Receptáculo de cónico a obcónico. Sépalas (4) 5, valvadas. Pétalas (4) 5, por vezes nulas, com frequência unguiculadas, muitas vezes cuculadas cobrindo parcial ou totalmente os estames, alternadas com as sépalas e geralmente menores que estas. Disco nectarífero em regra presente e bem desenvolvido, geralmente soldado ao hipanto, intrastaminal, livre ou unido ao ovario, muito variável na forma. Estames (4) 5, epipétalos; filetes livres, soldados à base das pétalas; anteras (1) 2-tecas, introrsas, longitudinalmente deiscentes. Ovário sincárpico, séssil, livre e súpero ou imerso no disco e ínfero ou semi-ínfero, (1) 2-3 (5)-locular; lóculos 1-ovulados com placentacão basilar; óvulos erectos, anatrópicos; estilete 2-4lobado ou 2-3-fido. Fruto urna drupa, cápsula septicida ou esquizocarpo, por vezes alado. Sementes em regra com albúmen pouco abundante, por vezes nulo; embrião grande, direito. Familia com cerca de 55 géneros e 900 espécies, distribuidas pelas regiões tropicais e subtropicais de África, América, Ásia e Austrália.

Flora de Cabo Verde: Plantas Vasculares - 32. Cucurbitaceae

Ervas anuais ou perenes, escandentes, trepadoras ou prostradas, com gavinhas, raramente ervas erectas sem gavinhas. Folhas alternas, palminerveas, simples ou pedadamente compostas. Gavinhas distalmente 2-fidas ou proximalmente 2-7-fidas, raras vezes reduzidas a espinhos ou ausentes, em geral urna por nó. Flores unissexuadas, monóicas ou dióicas, axilares, diversamente dispostas, as Q geralmente solitarias. Probrácteas por vezes presentes na base dos pedúnculos. Tubo-receptáculo (hipanto) curto a tubular, em geral -i-lobado, lobos geralmente pequenos. Pétalas em geral 5, livres ou diversamente unidas, corola na maioria dos casos regular. Androceu basicamente com 5 estames, diversamente modificado, em geral com 2 duplos estames e 1 estame simples, livres ou f unidos; tecas das anteras frequentemente convolutas; estaminódios com frequência presentes nas flores Q. Ovário ínfero, 1-locular ou por vezes 34ocular, geralmente formado a partir de 3 carpelos unidos; placentacão parietal, raramente axilar, placentas com frequência intrusivas; óvulos anatrópicos, horizontais, pêndulos ou ascendentes; estilete 1, com 2 ou geralmente 3 lobos estigmáticos. ou 3 estiletes. Fruto seco ou carnudo, cápsula, baga ou pepónio de casca dura, diversamente deiscente ou indeiscente, I -polispérmico, raras vezes tuna sâmara 1-spérmica. Sementes frequentemente achatadas, por vezex aladas: embrião grande; endosperma ausente. Familia pantropical de cerca de 600 espécies, algumas economicamente importantes como plantas alimenticias.