3'-UTR SIRF: A database for identifying clusters of short interspersed repeats in 3' untranslated regions

BACKGROUND:Short (~5 nucleotides) interspersed repeats regulate several aspects of post-transcriptional gene expression. Previously we developed an algorithm (REPFIND) that assigns P-values to all repeated motifs in a given nucleic acid sequence and reliably identifies clusters of short CAC-containing motifs required for mRNA localization in Xenopus oocytes.DESCRIPTION:In order to facilitate the identification of genes possessing clusters of repeats that regulate post-transcriptional aspects of gene expression in mammalian genes, we used REPFIND to create a database of all repeated motifs in the 3' untranslated regions (UTR) of genes from the Mammalian Gene Collection (MGC). The MGC database includes seven vertebrate species: human, cow, rat, mouse and three non-mammalian vertebrate species. A web-based application was developed to search this database of repeated motifs to generate species-specific lists of genes containing specific classes of repeats in their 3'-UTRs. This computational tool is called 3'-UTR SIRF (Short Interspersed Repeat Finder), and it reveals that hundreds of human genes contain an abundance of short CAC-rich and CAG-rich repeats in their 3'-UTRs that are similar to those found in mRNAs localized to the neurites of neurons. We tested four candidate mRNAs for localization in rat hippocampal neurons by in situ hybridization. Our results show that two candidate CAC-rich (Syntaxin 1B and Tubulin beta4) and two candidate CAG-rich (Sec61alpha and Syntaxin 1A) mRNAs are localized to distal neurites, whereas two control mRNAs lacking repeated motifs in their 3'-UTR remain primarily in the cell body.CONCLUSION:Computational data generated with 3'-UTR SIRF indicate that hundreds of mammalian genes have an abundance of short CA-containing motifs that may direct mRNA localization in neurons. In situ hybridization shows that four candidate mRNAs are localized to distal neurites of cultured hippocampal neurons. These data suggest that short CA-containing motifs may be part of a widely utilized genetic code that regulates mRNA localization in vertebrate cells. The use of 3'-UTR SIRF to search for new classes of motifs that regulate other aspects of gene expression should yield important information in future studies addressing cis-regulatory information located in 3'-UTRs.

Conformation-specific crosslinking of mitochondrial complex I

Complex I is the only component of the eukaryotic respiratory chain of which no high-resolution structure is yet available. A notable feature of mitochondrial complex I is the so-called active/de-active conformational transition of the idle enzyme from the active (A) to the de-active, (D) form. Using an amine- and sulfhydryl-reactive crosslinker of 6.8 Å length (SPDP) we found that in the D-form of complex I the ND3 subunit crosslinked to the 39 kDa (NDUFA9) subunit. These proteins could not be crosslinked in the A-form. Most likely, both subunits are closely located in the critical junction region connecting the peripheral hydrophilic domain to the membrane arm of the enzyme where the entrance path for substrate ubiquinone is and where energy transduction takes place.

Late-Glacial and early Holocene marine 14C reservoir ages off North Iceland (16-9 cal kyr BP)

Tephrochronological age models and 48 14C age determinations on molluscs and foraminifera (planktonic and benthic) are applied for the calculation of marine 14C reservoir age variability during a time period covering the Heinrich event H1 to early Holocene (16–9 cal kyr BP). Our data source consists of four high-resolution marine sediment cores (HM107-04, HM107-05, MD99-2271, MD99-2275) from the North Icelandic shelf. The marine reservoir age (ΔR) is found to be extremely variable, ranging from 385 to 1065 14C years. Extreme ΔR values occur at the end of H1, with values around 1000 14C years (~15 cal kyr BP), probably due to reduced northward flow of well-ventilated subtropical surface waters and a southward expansion of polar waters, as well as an expansion of sea ice limiting air-sea gas exchange. With the onset of the Bølling-Allerød interstadial, the ΔR values decrease towards 0 14C years suggesting a more vigorous North Atlantic Current and an active meridional overturning circulation system. During the Younger Dryas stadial, ΔR values are consistently around 700 14C years suggesting e renewed expansion of polar waters and a weakened meridional overtuning circulation. Interestingly, ΔR values remain high (~200 14C years) at the onset of the Holocene suggesting continued high influence of polar waters. Subsequently, ΔR values rapidly decrease to ~¬ 250 14C years around 11 cal kyr BP, indicating increased air-sea CO2 exchange with the coeval atmosphere. The ΔR values average around 0 14C years from around 10.5 to 9.0 cal kyr BP.

Evangélicos en América Latina

Considerada tradicionalmente "el continente católico" por excelencia, Latinoamérica siempre ha contado con una presencia minoritaria protestante, y en los últimos treinta años, a pesar de llegar a concentrar en su territorio a la mitad de los católicos del mundo, ha visto una acelerada diversificación del universo religioso, con una proliferación impresionante de denominaciones y grupos, cuya mayorÍa se declara "evangélica". Este proceso, con frecuencia descrito con expresión simplista "invasión de las sectas", se muestra complejo en sus características y articulado en su composición. Frente a tal crecimiento numérico, que en el año 2000 deberÍa involucrar al 20% de la población del continente, la Iglesia Católica parece oscilar entre la crÍtica al papel "alienante" de estos movimientos y la adopción de sus formas culturales celebrativas y espiritualizantes. Además, desde la mitad de los años 80, luego -y acaso como consecuencia- de tal expansión, los evangélicos empezaron a afirmar una inédita presencia polÍtica, culminada en l991 con la obtención en Guatemala del máximo cargo del Estado por parte de Jorge Serrano, primer presidente evangélico elegido en Latinoamérica. Contando con un sólido arraigo popular, los partidos y políticos evangélicos ya están difundidos en todos los paÍses, con un papel que alterna el conservadorismo milenarista, el corporativismo confesional y la concientización liberadora. Con este número especial, SIAL pretende principalmente ofrecer algunos materiales para un mejor conocimiento de este dinámico y complejo fenómeno religioso y social.

Personalisiertes Lernen in der Bibliothek: das Düsseldorfer Online-Tutorial (DOT) Informationskompetenz

Die Autoren beschreiben das von ihnen entwickelte Lerninformationssystem zur Informationskompetenz. Der Artikel behandelt den Aufbau und die Perspektiven des Systems.

Adulteration and Poor Quality of Ginkgo biloba Supplements

Adulteration of Ginkgo products sold as unregistered supplements within the very large market of Ginkgo products (reputedly £650 million annually) through the post-extraction addition of cheaper (e.g. buckwheat derived) rutin is suspected to allow sub-standard products to appear satisfactory to third parties, e.g. secondary buyers along the value chain or any regulatory authorities. This study was therefore carried out to identify products that did not conform to their label specification and may have been actively adulterated to enable access to the global markets. 500 MHz Bruker NMR spectroscopy instrumentation combined with Topspin version 3.2 and a CAMAG HPTLC system (HPTLC Association for the analysis of Ginkgo biloba leaf) were used to generate NMR spectra (focusing on the 6–8 ppm region for analysis) and chromatograms, respectively. Out of the 35 samples of Ginkgo biloba analysed, 33 were found to contain elevated levels of rutin and/or quercetin, or low levels of Ginkgo metabolites when compared with the reference samples. Samples with disproportional levels of rutin or quercetin compared with other gingko metabolites are likely to be adulterated, either by accident or intentionally, and those samples with low or non-existent gingko metabolite content may have been produced using poor extraction techniques. Only two of the investigated samples were found to match with the High-Performance Thin-Layer Chromatography (HPTLC) fingerprint of the selected reference material. All others deviated significantly. One product contained a 5-hydroxytryptophan derivative, which is not a natural constituent of Ginkgo biloba. Overall, these examples either suggest a poor extraction technique or deliberate adulteration along the value chain. Investigating the ratio of different flavonoids e.g. quercetin and kaempferol using NMR spectroscopy and HPTLC will provide further evidence as to the degree and kind of adulteration of Gingko supplements. From a consumer perspective the equivalence in identity and overall quality of the products needs to be guaranteed for supplements too and not only for products produced according to a quality standard or pharmacopoeial monograph.

Proceedings : Grand Lodge, A.F. & A.M. of Canada in the Province of Ontario - 1896

On spine : The Grand Lodge of Canada in the Province of Ontario.

La thématique hivernale dans les oeuvres de Maurice Cullen, de 1896 à 1914

Ce mémoire propose une étude de la thématique hivernale dans les tableaux réalisés par Maurice Cullen (1864-1936) entre 1896 et 1914. Elle s’appuie sur une analyse des contextes politiques et culturels. Pour représenter les paysages enneigés canadiens, Cullen adapte quelques techniques modernes issues de l’impressionnisme, acquises lors de son premier séjour en Europe. Malgré cette influence artistique étrangère présente par l’emploi d’une palette de couleurs vives et de la touche divisée, le respect de la perspective et de la tridimensionnalité témoignent du maintien de certains principes académiques. L’usage de procédés impressionnistes permet à cet artiste de mettre en évidence les caractéristiques atmosphériques et lumineuses de son pays. Par l’application de ces procédés sur la représentation de la neige, Cullen participe ainsi à un travail de redécouverte et de valorisation du territoire. En effet, il privilégie plutôt l’expérience sensitive du territoire que le choix de la thématique des œuvres. L’ensemble des données visuelles et sensitives contenues dans ses œuvres a pour objectif de faire prendre conscience au spectateur de sa difficulté à se repérer au sein de son propre territoire et à accepter les rudes conditions climatiques inhérentes au Canada. Ce travail demeure impartial face au conflit identitaire opposant les francophones et les anglophones, bien qu’il intervienne dans les prémices de la mise en place d’une esthétique canadienne. Ce mémoire défend l’idée que Cullen renouvelle l’imagerie hivernale et s’inscrit dans les débuts du processus de création d’une iconographie nationale. Avec ses pairs, il s’engage à valoriser l’art local, et il ouvre une réflexion sur la représentation du territoire canadien, qui sera poursuivie par la génération suivante avec le Groupe des Sept.

Reduction of radar cross section of targets using periodic strip grating technique

The- classic: experiment of Heinrich Hertz verified the theoretical predict him of Maxwell that kxnfli radio and light waves are physical phenomena governed by the same physical laws. This has started a.rnnJ era of interest in interaction of electromagnetic energy with matter. The scattering of electromagnetic waves from a target is cleverly utilized im1 RADAR. This electronic system used tx> detect and locate objects under unfavourable conditions or obscuration that would render the unaided eye useless. It also provides a means for measuring precisely the range, or distance of an object and the speed of a moving object. when an obstacle is illuminated by electromagnetic waves, energy is dispersed in all directions. The dispersed energy depends on the size, shape and composition of the obstacle and frequency and nature of the incident wave. This distribution of energy’ is known as ‘scattering’ and the obstacle as ‘scatterer’ or 'target'.